PDB Chemical Component RJ1
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for RJ1
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C8 |
C1 |
1.493 |
1.506 |
| C1 |
C6 |
1.409 |
1.382 |
| C1 |
C2 |
1.359 |
1.383 |
| C2 |
C3 |
1.337 |
1.383 |
| C2 |
H2 |
1.080 |
1.080 |
| C3 |
C4 |
1.378 |
1.382 |
| C3 |
H3 |
1.079 |
1.080 |
| C5 |
C4 |
1.408 |
1.389 |
| C4 |
CL7 |
1.674 |
1.737 |
| C6 |
C5 |
1.392 |
1.389 |
| C5 |
N12 |
1.437 |
1.399 |
| C6 |
H6 |
1.080 |
1.079 |
| F11 |
C8 |
1.407 |
1.399 |
| F9 |
C8 |
1.369 |
1.399 |
| C8 |
F10 |
1.393 |
1.399 |
| N12 |
C13 |
1.411 |
1.376 |
| N12 |
HN12 |
1.000 |
0.970 |
| C13 |
N17 |
1.299 |
1.302 |
| C13 |
N14 |
1.359 |
1.380 |
| N14 |
C15 |
1.339 |
1.379 |
| N14 |
HN14 |
1.000 |
0.971 |
| N18 |
C15 |
1.284 |
1.303 |
| C15 |
N16 |
1.338 |
1.375 |
| N16 |
HN16 |
1.000 |
0.970 |
| N16 |
HN1A |
1.000 |
0.971 |
| N17 |
HN17 |
1.000 |
0.971 |
| N18 |
HN18 |
1.000 |
0.969 |
Bond Angles for RJ1
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
C6 |
119.5 |
120.1 |
| C1 |
C6 |
C5 |
121.0 |
119.9 |
| C1 |
C6 |
H6 |
119.5 |
120.0 |
| C1 |
C2 |
C3 |
120.8 |
120.2 |
| C1 |
C2 |
H2 |
119.6 |
119.9 |
| C3 |
C2 |
H2 |
119.6 |
119.9 |
| C2 |
C3 |
C4 |
121.3 |
120.0 |
| C2 |
C3 |
H3 |
119.3 |
120.0 |
| C4 |
C3 |
H3 |
119.3 |
120.0 |
| C3 |
C4 |
CL7 |
116.4 |
120.0 |
| C5 |
C4 |
CL7 |
122.9 |
120.0 |
| C6 |
C5 |
N12 |
122.7 |
120.0 |
| C5 |
N12 |
C13 |
151.6 |
120.0 |
| C5 |
N12 |
HN12 |
104.2 |
120.0 |
| F9 |
C8 |
F10 |
110.4 |
109.5 |
| C13 |
N12 |
HN12 |
104.2 |
120.0 |
| N12 |
C13 |
N17 |
119.0 |
120.0 |
| N12 |
C13 |
N14 |
125.5 |
120.0 |
| N14 |
C13 |
N17 |
115.4 |
120.0 |
| C13 |
N17 |
HN17 |
109.8 |
120.0 |
| C13 |
N14 |
C15 |
140.1 |
120.0 |
| C13 |
N14 |
HN14 |
110.0 |
120.0 |
| C15 |
N14 |
HN14 |
109.9 |
120.0 |
| N14 |
C15 |
N16 |
122.5 |
120.0 |
| C15 |
N16 |
HN16 |
110.9 |
120.1 |
| C15 |
N16 |
HN1A |
124.5 |
120.0 |
| HN16 |
N16 |
HN1A |
124.6 |
119.9 |
Torsion Angles for RJ1
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C8 |
C1 |
C6 |
H6 |
359.7 |
0.2 |
| C8 |
C1 |
C2 |
H2 |
360.0 |
359.8 |
| C6 |
C1 |
C2 |
C3 |
358.9 |
359.9 |
| C6 |
C1 |
C2 |
H2 |
178.9 |
180.0 |
| C1 |
C6 |
C5 |
N12 |
180.6 |
180.0 |
| C2 |
C1 |
C6 |
C5 |
0.8 |
0.1 |
| C2 |
C1 |
C6 |
H6 |
180.8 |
180.0 |
| C3 |
C2 |
C1 |
H2 |
180.0 |
180.0 |
| C1 |
C2 |
C3 |
C4 |
1.3 |
0.1 |
| C1 |
C2 |
C3 |
H3 |
181.3 |
180.0 |
| C3 |
C2 |
C1 |
C6 |
358.9 |
359.9 |
| C1 |
C2 |
C3 |
H2 |
180.0 |
180.0 |
| C4 |
C3 |
C2 |
H3 |
180.0 |
180.1 |
| C2 |
C3 |
C4 |
CL7 |
179.8 |
180.0 |
| H2 |
C2 |
C1 |
C6 |
178.9 |
180.0 |
| C1 |
C2 |
H2 |
C3 |
180.0 |
180.0 |
| H2 |
C2 |
C3 |
C4 |
181.3 |
180.0 |
| H2 |
C2 |
C3 |
H3 |
1.3 |
360.0 |
| C4 |
C3 |
C2 |
H2 |
181.3 |
180.0 |
| C2 |
C3 |
C4 |
H3 |
180.0 |
179.9 |
| C5 |
C4 |
C3 |
CL7 |
178.9 |
180.0 |
| H3 |
C3 |
C2 |
H2 |
1.3 |
360.0 |
| C2 |
C3 |
H3 |
C4 |
180.0 |
180.1 |
| H3 |
C3 |
C4 |
CL7 |
359.8 |
0.0 |
| C1 |
C6 |
C5 |
C4 |
359.2 |
359.9 |
| C5 |
C4 |
C3 |
H3 |
178.7 |
180.0 |
| C3 |
C4 |
C5 |
CL7 |
181.1 |
180.0 |
| CL7 |
C4 |
C3 |
H3 |
359.8 |
0.0 |
| C1 |
C6 |
C5 |
H6 |
180.0 |
179.9 |
| C6 |
C5 |
C4 |
CL7 |
179.9 |
180.0 |
| C6 |
C5 |
N12 |
C13 |
207.2 |
325.3 |
| C6 |
C5 |
N12 |
HN12 |
27.3 |
145.3 |
| N12 |
C5 |
C4 |
CL7 |
358.5 |
360.0 |
| C13 |
N12 |
C5 |
HN12 |
180.0 |
180.0 |
| C5 |
N12 |
C13 |
N17 |
316.4 |
5.1 |
| C5 |
N12 |
C13 |
N14 |
138.2 |
185.1 |
| C1 |
C6 |
H6 |
C5 |
180.0 |
180.1 |
| H6 |
C6 |
C5 |
N12 |
0.6 |
0.1 |
| C5 |
N12 |
C13 |
HN12 |
180.0 |
180.0 |
| N14 |
C13 |
N12 |
N17 |
181.8 |
180.0 |
| N12 |
C13 |
N17 |
HN17 |
180.0 |
185.0 |
| N12 |
C13 |
N14 |
C15 |
355.4 |
354.6 |
| N12 |
C13 |
N14 |
HN14 |
175.4 |
174.6 |
| C5 |
N12 |
HN12 |
C13 |
180.0 |
180.0 |
| HN12 |
N12 |
C13 |
N17 |
136.4 |
185.0 |
| HN12 |
N12 |
C13 |
N14 |
318.2 |
5.0 |
| N17 |
C13 |
N12 |
HN12 |
136.4 |
185.0 |
| N12 |
C13 |
N17 |
N14 |
181.6 |
180.0 |
| N17 |
C13 |
N14 |
C15 |
177.1 |
174.6 |
| N17 |
C13 |
N14 |
HN14 |
357.1 |
354.6 |
| N14 |
C13 |
N12 |
HN12 |
318.2 |
5.0 |
| N12 |
C13 |
N14 |
N17 |
178.3 |
180.0 |
| N14 |
C13 |
N17 |
HN17 |
358.4 |
5.0 |
| C15 |
N14 |
C13 |
HN14 |
180.0 |
180.0 |
| C13 |
N14 |
C15 |
N16 |
218.4 |
185.9 |
| C15 |
N14 |
C13 |
N17 |
177.1 |
174.6 |
| C13 |
N14 |
C15 |
HN14 |
180.0 |
180.0 |
| N14 |
C15 |
N16 |
HN16 |
1.1 |
5.0 |
| N14 |
C15 |
N16 |
HN1A |
181.1 |
185.0 |
| HN14 |
N14 |
C13 |
N17 |
357.1 |
354.6 |
| C13 |
N14 |
HN14 |
C15 |
180.0 |
180.0 |
| HN14 |
N14 |
C15 |
N16 |
38.5 |
5.9 |
| N18 |
C15 |
N14 |
HN14 |
220.5 |
185.9 |
| N18 |
C15 |
N16 |
HN16 |
179.1 |
185.0 |
| N18 |
C15 |
N16 |
HN1A |
359.0 |
5.0 |
| N16 |
C15 |
N14 |
HN14 |
38.5 |
5.9 |
| HN16 |
N16 |
C15 |
HN1A |
180.0 |
180.0 |
| C15 |
N16 |
HN16 |
HN1A |
180.0 |
180.0 |
| C15 |
N16 |
HN1A |
HN16 |
180.0 |
180.0 |