PDB Chemical Component RIM

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for RIM

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
CA CB 1.535 1.530
CA HA1 1.100 1.090
CA HA2 1.101 1.090
CA HA3 1.100 1.090
CB CD 1.553 1.530
CB NC 1.488 1.469
CB HB 1.100 1.090
NC HNC1 1.000 1.009
NC HNC2 1.000 1.010
CD CE2 1.538 1.530
CD CE1 1.535 1.530
CD CE3 1.541 1.530
CE1 CF1 1.532 1.530
CE1 HE11 1.100 1.091
CE1 HE12 1.100 1.090
CE2 CF2 1.528 1.530
CE2 HE21 1.101 1.089
CE2 HE22 1.099 1.090
CE3 CF3 1.532 1.531
CE3 HE31 1.100 1.090
CE3 HE32 1.100 1.090
CF1 CG1 1.521 1.530
CF1 CG3 1.525 1.530
CF1 HF1 1.100 1.090
CF2 CG1 1.522 1.530
CF2 CG2 1.521 1.531
CF2 HF2 1.099 1.090
CF3 CG2 1.522 1.529
CF3 CG3 1.524 1.530
CF3 HF3 1.100 1.090
CG1 HG11 1.101 1.089
CG1 HG12 1.100 1.090
CG2 HG21 1.100 1.090
CG2 HG22 1.100 1.090
CG3 HG31 1.100 1.090
CG3 HG32 1.100 1.090

Bond Angles for RIM

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
CB CA HA1 109.5 109.5
CB CA HA2 109.4 109.5
CB CA HA3 109.4 109.5
CA CB CD 112.1 109.5
CA CB NC 108.6 109.5
CA CB HB 108.3 109.4
HA1 CA HA2 109.5 109.4
HA1 CA HA3 109.4 109.5
HA2 CA HA3 109.5 109.5
NC CB CD 109.5 109.5
CD CB HB 107.4 109.5
CB CD CE2 108.4 109.5
CB CD CE1 109.5 109.5
CB CD CE3 111.7 109.5
NC CB HB 110.9 109.5
CB NC HNC1 109.5 111.0
CB NC HNC2 109.5 111.0
HNC1 NC HNC2 109.5 111.0
CE1 CD CE2 108.9 109.4
CE2 CD CE3 109.1 109.5
CD CE2 CF2 110.0 109.5
CD CE2 HE21 109.3 109.5
CD CE2 HE22 109.2 109.4
CE1 CD CE3 109.1 109.5
CD CE1 CF1 109.6 109.5
CD CE1 HE11 109.4 109.5
CD CE1 HE12 109.4 109.5
CD CE3 CF3 109.4 109.5
CD CE3 HE31 109.5 109.5
CD CE3 HE32 109.5 109.5
CF1 CE1 HE11 109.4 109.5
CF1 CE1 HE12 109.4 109.5
CE1 CF1 CG1 109.4 109.5
CE1 CF1 CG3 109.5 109.5
CE1 CF1 HF1 109.4 109.4
HE11 CE1 HE12 109.5 109.4
CF2 CE2 HE21 109.3 109.5
CF2 CE2 HE22 109.2 109.5
CE2 CF2 CG1 109.5 109.5
CE2 CF2 CG2 109.0 109.5
CE2 CF2 HF2 109.7 109.5
HE21 CE2 HE22 109.8 109.4
CF3 CE3 HE31 109.5 109.5
CF3 CE3 HE32 109.5 109.5
CE3 CF3 CG2 109.9 109.5
CE3 CF3 CG3 109.0 109.4
CE3 CF3 HF3 109.4 109.4
HE31 CE3 HE32 109.3 109.5
CG1 CF1 CG3 109.2 109.5
CG1 CF1 HF1 109.7 109.4
CF1 CG1 CF2 109.9 109.4
CF1 CG1 HG11 109.3 109.5
CF1 CG1 HG12 109.2 109.5
CG3 CF1 HF1 109.6 109.5
CF1 CG3 CF3 110.0 109.5
CF1 CG3 HG31 109.3 109.5
CF1 CG3 HG32 109.2 109.4
CG1 CF2 CG2 109.5 109.5
CG1 CF2 HF2 109.2 109.5
CF2 CG1 HG11 109.3 109.5
CF2 CG1 HG12 109.2 109.5
CG2 CF2 HF2 109.8 109.5
CF2 CG2 CF3 110.0 109.5
CF2 CG2 HG21 109.3 109.4
CF2 CG2 HG22 109.2 109.5
CG2 CF3 CG3 109.3 109.5
CG2 CF3 HF3 109.1 109.5
CF3 CG2 HG21 109.3 109.4
CF3 CG2 HG22 109.2 109.5
CG3 CF3 HF3 110.1 109.5
CF3 CG3 HG31 109.3 109.5
CF3 CG3 HG32 109.2 109.5
HG11 CG1 HG12 109.8 109.5
HG21 CG2 HG22 109.9 109.5
HG31 CG3 HG32 109.9 109.5

Torsion Angles for RIM

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
HA1 CA CB HA2 240.0 240.1
HA1 CA CB HA3 120.0 120.0
HA2 CA CB HA3 240.0 240.0
NC CB CA CD 238.9 240.0
CD CB CA HB 241.7 240.0
CA CB CD CE2 201.9 179.9
CA CB CD CE1 83.2 60.0
CA CB CD CE3 322.1 300.0
NC CB CA HB 120.5 120.0
CA CB NC HNC1 160.0 300.0
CA CB NC HNC2 280.0 64.0
CB CA HA1 HA2 120.0 120.0
CB CA HA1 HA3 240.0 240.0
HA1 CA CB CD 193.7 60.0
HA1 CA CB NC 72.6 300.0
HA1 CA CB HB 312.0 180.0
HA2 CA HA1 HA3 120.0 120.0
CB CA HA2 HA1 239.9 240.0
CB CA HA2 HA3 120.0 120.1
HA2 CA CB CD 313.7 180.0
HA2 CA CB NC 192.6 59.9
HA2 CA CB HB 72.1 300.0
HA1 CA HA2 HA3 240.0 240.0
CB CA HA3 HA1 120.0 120.0
CB CA HA3 HA2 240.0 240.0
HA3 CA CB CD 73.7 300.0
HA3 CA CB NC 312.6 180.0
HA3 CA CB HB 192.1 60.0
HA1 CA HA3 HA2 120.0 120.0
CD CB CA HA1 193.7 60.0
CD CB CA HA2 313.7 180.0
CD CB CA HA3 73.7 300.0
CA CB CD NC 239.4 240.0
CA CB CD HB 118.8 120.0
NC CB CD HB 239.5 240.0
CD CB NC HNC1 37.3 180.0
CD CB NC HNC2 157.3 304.0
CE1 CD CB CE2 241.3 240.0
CE2 CD CB CE3 239.8 240.0
CB CD CE2 CF2 181.6 180.0
CB CD CE2 HE21 301.6 300.0
CB CD CE2 HE22 61.8 60.0
CE1 CD CB CE3 121.0 120.0
CB CD CE1 CF1 177.9 180.0
CB CD CE1 HE11 298.0 300.0
CB CD CE1 HE12 58.0 60.0
CB CD CE3 CF3 181.4 180.0
CB CD CE3 HE31 301.5 300.0
CB CD CE3 HE32 61.4 60.0
NC CB CA HA1 72.6 300.0
NC CB CA HA2 192.6 59.9
NC CB CA HA3 312.6 180.0
CA CB NC CD 122.7 120.0
CA CB NC HB 241.1 240.1
CD CB NC HB 118.4 120.1
NC CB CD CE2 322.5 300.0
NC CB CD CE1 203.8 180.0
NC CB CD CE3 82.8 60.0
HNC1 NC CB HNC2 240.0 236.0
HB CB CA HA1 312.0 180.0
HB CB CA HA2 72.1 300.0
HB CB CA HA3 192.1 60.0
CA CB HB CD 238.8 240.0
CA CB HB NC 119.1 120.0
NC CB HB CD 119.7 120.1
HB CB CD CE2 83.1 60.0
HB CB CD CE1 324.3 300.0
HB CB CD CE3 203.3 180.0
HB CB NC HNC1 278.9 60.0
HB CB NC HNC2 38.9 183.9
HNC1 NC CB CD 37.3 180.0
HNC1 NC CB HB 278.9 60.0
CB NC HNC1 HNC2 120.0 124.0
HNC2 NC CB CD 157.3 304.0
HNC2 NC CB HB 38.9 183.9
CB NC HNC2 HNC1 239.9 236.0
CE2 CD CB HB 83.1 60.0
CB CD CE2 CE1 240.9 240.0
CB CD CE2 CE3 121.9 120.0
CE1 CD CE2 CE3 241.0 240.0
CE2 CD CE1 CF1 59.5 60.0
CE2 CD CE1 HE11 179.5 180.0
CE2 CD CE1 HE12 299.6 300.0
CE2 CD CE3 CF3 301.3 300.0
CE2 CD CE3 HE31 61.3 60.0
CE2 CD CE3 HE32 181.2 180.0
CF2 CE2 CD HE21 240.0 240.0
CF2 CE2 CD HE22 119.8 120.0
CD CE2 CF2 CG1 59.4 60.0
CD CE2 CF2 CG2 299.6 300.0
CD CE2 CF2 HF2 179.4 180.0
HE21 CE2 CD HE22 239.8 240.1
CE1 CD CB HB 324.3 300.0
CB CD CE1 CE2 118.4 120.0
CB CD CE1 CE3 237.4 240.0
CE2 CD CE1 CE3 119.0 120.0
CE1 CD CE2 CF2 300.8 300.0
CE1 CD CE2 HE21 60.7 60.0
CE1 CD CE2 HE22 181.0 180.0
CE1 CD CE3 CF3 60.2 60.0
CE1 CD CE3 HE31 180.2 180.0
CE1 CD CE3 HE32 300.1 300.0
CF1 CE1 CD HE11 240.0 240.0
CF1 CE1 CD HE12 119.9 120.0
CD CE1 CF1 CG1 299.7 300.0
CD CE1 CF1 CG3 59.4 60.0
CD CE1 CF1 HF1 179.6 180.0
HE11 CE1 CD HE12 240.0 240.1
CE3 CD CB HB 203.3 180.0
CB CD CE3 CE2 240.2 240.0
CB CD CE3 CE1 121.3 120.0
CE1 CD CE3 CE2 118.9 120.0
CE3 CD CE2 CF2 59.8 60.0
CE3 CD CE2 HE21 179.8 180.0
CE3 CD CE2 HE22 300.0 300.0
CE3 CD CE1 CF1 300.5 300.0
CE3 CD CE1 HE11 60.6 60.0
CE3 CD CE1 HE12 180.6 179.9
CF3 CE3 CD HE31 240.0 240.0
CF3 CE3 CD HE32 120.1 120.0
CD CE3 CF3 CG2 59.2 60.0
CD CE3 CF3 CG3 299.4 300.0
CD CE3 CF3 HF3 179.0 180.0
HE31 CE3 CD HE32 240.1 240.0
CF1 CE1 CD CE2 59.5 60.0
CF1 CE1 CD CE3 300.5 300.0
CD CE1 CF1 HE11 120.0 120.0
CD CE1 CF1 HE12 240.1 240.0
HE11 CE1 CF1 HE12 120.0 119.9
CG1 CF1 CE1 CG3 240.3 240.0
CG1 CF1 CE1 HF1 120.2 119.9
CE1 CF1 CG1 CF2 60.3 60.0
CE1 CF1 CG1 HG11 180.3 180.0
CE1 CF1 CG1 HG12 300.5 300.0
CG3 CF1 CE1 HF1 239.9 240.0
CE1 CF1 CG3 CF3 299.8 300.0
CE1 CF1 CG3 HG31 59.8 60.0
CE1 CF1 CG3 HG32 180.0 180.0
HE11 CE1 CD CE2 179.5 180.0
HE11 CE1 CD CE3 60.6 60.0
CD CE1 HE11 CF1 239.9 240.0
CD CE1 HE11 HE12 119.9 120.0
CF1 CE1 HE11 HE12 240.1 240.0
HE11 CE1 CF1 CG1 179.7 179.9
HE11 CE1 CF1 CG3 299.4 300.0
HE11 CE1 CF1 HF1 59.5 60.0
HE12 CE1 CD CE2 299.6 300.0
HE12 CE1 CD CE3 180.6 179.9
CD CE1 HE12 CF1 120.1 120.0
CD CE1 HE12 HE11 240.0 240.0
CF1 CE1 HE12 HE11 120.0 120.0
HE12 CE1 CF1 CG1 59.7 60.0
HE12 CE1 CF1 CG3 179.4 180.0
HE12 CE1 CF1 HF1 299.5 300.0
CF2 CE2 CD CE3 59.8 60.0
CD CE2 CF2 HE21 120.0 120.0
CD CE2 CF2 HE22 240.2 240.0
HE21 CE2 CF2 HE22 120.2 120.0
CF1 CG1 CF2 CE2 300.1 300.0
CG1 CF2 CE2 CG2 119.8 120.0
CG1 CF2 CE2 HF2 240.1 240.0
CE2 CF2 CG1 HG11 180.1 180.0
CE2 CF2 CG1 HG12 59.9 60.0
CG2 CF2 CE2 HF2 120.3 120.0
CE2 CF2 CG2 CF3 60.4 60.0
CE2 CF2 CG2 HG21 180.4 180.0
CE2 CF2 CG2 HG22 300.6 300.0
HE21 CE2 CD CE3 179.8 180.0
CD CE2 HE21 CF2 239.6 240.0
CD CE2 HE21 HE22 119.8 119.9
CF2 CE2 HE21 HE22 240.2 240.0
HE21 CE2 CF2 CG1 299.4 300.0
HE21 CE2 CF2 CG2 179.6 180.0
HE21 CE2 CF2 HF2 59.3 60.0
HE22 CE2 CD CE3 300.0 300.0
CD CE2 HE22 CF2 120.3 120.0
CD CE2 HE22 HE21 240.1 240.0
CF2 CE2 HE22 HE21 119.8 120.0
HE22 CE2 CF2 CG1 179.3 180.0
HE22 CE2 CF2 CG2 59.4 60.0
HE22 CE2 CF2 HF2 299.2 300.0
CD CE3 CF3 HE31 120.0 120.0
CD CE3 CF3 HE32 239.9 240.0
HE31 CE3 CF3 HE32 119.9 120.0
CF1 CG3 CF3 CE3 60.7 60.0
CF2 CG2 CF3 CE3 299.8 300.0
CG2 CF3 CE3 CG3 119.8 120.0
CG2 CF3 CE3 HF3 240.2 240.0
CE3 CF3 CG2 HG21 179.8 180.0
CE3 CF3 CG2 HG22 59.6 60.0
CG3 CF3 CE3 HF3 120.4 120.0
CE3 CF3 CG3 HG31 300.7 300.0
CE3 CF3 CG3 HG32 180.5 180.0
CD CE3 HE31 CF3 240.1 240.0
CD CE3 HE31 HE32 120.0 120.0
CF3 CE3 HE31 HE32 240.0 240.0
HE31 CE3 CF3 CG2 299.2 300.0
HE31 CE3 CF3 CG3 179.4 180.0
HE31 CE3 CF3 HF3 59.0 60.0
CD CE3 HE32 CF3 120.0 120.0
CD CE3 HE32 HE31 240.0 240.0
CF3 CE3 HE32 HE31 120.0 120.0
HE32 CE3 CF3 CG2 179.3 180.0
HE32 CE3 CF3 CG3 59.5 60.0
HE32 CE3 CF3 HF3 299.1 300.0
CG1 CF1 CE1 HE11 179.7 179.9
CG1 CF1 CE1 HE12 59.7 60.0
CE1 CF1 CG1 CG3 119.9 120.0
CE1 CF1 CG1 HF1 240.0 240.1
CE2 CF2 CG1 CF1 300.1 300.0
CG3 CF1 CG1 HF1 120.1 120.1
CG1 CF1 CG3 CF3 59.6 60.0
CG1 CF1 CG3 HG31 179.6 180.0
CG1 CF1 CG3 HG32 299.8 300.0
CF1 CG1 CF2 CG2 59.6 60.0
CF1 CG1 CF2 HF2 179.9 180.0
CF2 CG1 CF1 HG11 240.0 240.0
CF2 CG1 CF1 HG12 119.8 120.0
HG11 CG1 CF1 HG12 239.8 240.0
CG3 CF1 CE1 HE11 299.4 300.0
CG3 CF1 CE1 HE12 179.4 180.0
CE1 CF1 CG3 CG1 240.2 240.0
CE1 CF1 CG3 HF1 120.0 120.0
CE3 CF3 CG3 CF1 60.7 60.0
CG1 CF1 CG3 HF1 239.8 240.0
CG3 CF1 CG1 CF2 300.4 300.0
CG3 CF1 CG1 HG11 60.4 60.0
CG3 CF1 CG1 HG12 180.6 180.0
CG2 CF3 CG3 CF1 300.5 300.1
CF1 CG3 CF3 HF3 180.7 180.0
CF3 CG3 CF1 HG31 240.0 240.0
CF3 CG3 CF1 HG32 119.8 120.0
HG31 CG3 CF1 HG32 239.8 240.0
HF1 CF1 CE1 HE11 59.5 60.0
HF1 CF1 CE1 HE12 299.5 300.0
CE1 CF1 HF1 CG1 120.0 120.0
CE1 CF1 HF1 CG3 239.9 240.0
CG1 CF1 HF1 CG3 119.9 120.1
HF1 CF1 CG1 CF2 180.3 179.9
HF1 CF1 CG1 HG11 300.3 300.0
HF1 CF1 CG1 HG12 60.5 60.0
HF1 CF1 CG3 CF3 179.8 180.0
HF1 CF1 CG3 HG31 299.8 300.0
HF1 CF1 CG3 HG32 60.0 60.0
CG1 CF2 CE2 HE21 299.4 300.0
CG1 CF2 CE2 HE22 179.3 180.0
CE2 CF2 CG1 CG2 240.5 240.0
CE2 CF2 CG1 HF2 120.2 120.0
CF2 CG1 CF1 CG3 300.4 300.0
CF2 CG1 CF1 HF1 180.3 179.9
CF1 CG1 CF2 HG11 120.0 120.0
CF1 CG1 CF2 HG12 240.2 240.0
CG2 CF2 CG1 HF2 239.7 240.0
CG1 CF2 CG2 CF3 300.5 300.0
CG1 CF2 CG2 HG21 60.5 60.0
CG1 CF2 CG2 HG22 180.7 180.0
HG11 CG1 CF2 HG12 120.2 120.0
CG2 CF2 CE2 HE21 179.6 180.0
CG2 CF2 CE2 HE22 59.4 60.0
CE2 CF2 CG2 CG1 119.8 120.0
CE2 CF2 CG2 HF2 239.8 240.0
CE3 CF3 CG2 CF2 299.8 300.0
CG1 CF2 CG2 HF2 119.9 120.0
CG2 CF2 CG1 HG11 299.6 300.0
CG2 CF2 CG1 HG12 179.4 179.9
CF2 CG2 CF3 CG3 59.4 60.0
CF2 CG2 CF3 HF3 179.8 180.0
CF3 CG2 CF2 HG21 240.0 240.0
CF3 CG2 CF2 HG22 119.8 120.1
HG21 CG2 CF2 HG22 239.8 240.0
HF2 CF2 CE2 HE21 59.3 60.0
HF2 CF2 CE2 HE22 299.2 300.0
CE2 CF2 HF2 CG1 239.9 240.0
CE2 CF2 HF2 CG2 119.8 120.0
CG1 CF2 HF2 CG2 239.9 240.0
HF2 CF2 CG1 HG11 59.9 60.0
HF2 CF2 CG1 HG12 299.7 299.9
HF2 CF2 CG2 CF3 180.6 180.0
HF2 CF2 CG2 HG21 300.6 300.0
HF2 CF2 CG2 HG22 60.8 60.0
CG2 CF3 CE3 HE31 299.2 300.0
CG2 CF3 CE3 HE32 179.3 180.0
CE3 CF3 CG2 CG3 240.4 240.0
CE3 CF3 CG2 HF3 120.0 120.0
CF1 CG3 CF3 CG2 300.5 300.1
CF3 CG2 CF2 HF2 180.6 180.0
CF2 CG2 CF3 HG21 120.0 120.0
CF2 CG2 CF3 HG22 240.2 240.0
CG3 CF3 CG2 HF3 239.6 239.9
CG2 CF3 CG3 HG31 180.5 180.0
CG2 CF3 CG3 HG32 60.3 60.0
HG21 CG2 CF3 HG22 120.2 120.0
CG3 CF3 CE3 HE31 179.4 180.0
CG3 CF3 CE3 HE32 59.5 60.0
CE3 CF3 CG3 CG2 120.2 120.0
CE3 CF3 CG3 HF3 240.0 240.0
CF3 CG3 CF1 HF1 179.8 180.0
CF1 CG3 CF3 HG31 120.0 120.0
CF1 CG3 CF3 HG32 240.2 240.0
CG2 CF3 CG3 HF3 119.8 120.0
CG3 CF3 CG2 HG21 299.4 300.0
CG3 CF3 CG2 HG22 179.2 180.0
HG31 CG3 CF3 HG32 120.2 120.0
HF3 CF3 CE3 HE31 59.0 60.0
HF3 CF3 CE3 HE32 299.1 300.0
CE3 CF3 HF3 CG2 239.7 240.0
CE3 CF3 HF3 CG3 119.7 120.0
CG2 CF3 HF3 CG3 240.0 239.9
HF3 CF3 CG2 HG21 59.8 60.1
HF3 CF3 CG2 HG22 299.6 300.0
HF3 CF3 CG3 HG31 60.7 60.0
HF3 CF3 CG3 HG32 300.5 300.0
HG11 CG1 CF1 CG3 60.4 60.0
HG11 CG1 CF1 HF1 300.3 300.0
CF1 CG1 HG11 CF2 239.6 240.0
CF1 CG1 HG11 HG12 119.8 120.0
HG11 CG1 CF2 CG2 299.6 300.0
HG11 CG1 CF2 HF2 59.9 60.0
CF2 CG1 HG11 HG12 240.2 240.0
HG12 CG1 CF1 CG3 180.6 180.0
HG12 CG1 CF1 HF1 60.5 60.0
CF1 CG1 HG12 CF2 120.3 120.0
CF1 CG1 HG12 HG11 240.1 240.0
HG12 CG1 CF2 CG2 179.4 179.9
HG12 CG1 CF2 HF2 299.7 299.9
CF2 CG1 HG12 HG11 119.9 120.0
HG21 CG2 CF2 HF2 300.6 300.0
CF2 CG2 HG21 CF3 239.6 240.0
CF2 CG2 HG21 HG22 119.8 120.0
HG21 CG2 CF3 CG3 299.4 300.0
HG21 CG2 CF3 HF3 59.8 60.1
CF3 CG2 HG21 HG22 240.2 240.0
HG22 CG2 CF2 HF2 60.8 60.0
CF2 CG2 HG22 CF3 120.3 120.1
CF2 CG2 HG22 HG21 240.1 240.0
HG22 CG2 CF3 CG3 179.2 180.0
HG22 CG2 CF3 HF3 299.6 300.0
CF3 CG2 HG22 HG21 119.9 120.0
HG31 CG3 CF1 HF1 299.8 300.0
CF1 CG3 HG31 CF3 239.6 240.0
CF1 CG3 HG31 HG32 119.8 120.0
HG31 CG3 CF3 HF3 60.7 60.0
CF3 CG3 HG31 HG32 240.2 240.0
HG32 CG3 CF1 HF1 60.0 60.0
CF1 CG3 HG32 CF3 120.3 120.0
CF1 CG3 HG32 HG31 240.1 240.0
HG32 CG3 CF3 HF3 300.5 300.0
CF3 CG3 HG32 HG31 119.8 120.0