PDB Chemical Component RIL

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for RIL

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 C2 1.344 1.337
C1 H11 1.103 1.084
C1 H12 1.103 1.084
C2 C5 1.508 1.500
C2 H2 1.103 1.087
C5 C7 1.530 1.530
C5 H51 1.115 1.097
C5 H52 1.115 1.097
C7 C10 1.534 1.530
C7 H71 1.115 1.097
C7 H72 1.115 1.097
C10 C13 1.535 1.524
C10 H101 1.115 1.097
C10 H102 1.115 1.096
C13 P16 1.829 1.807
C13 H131 1.115 1.095
C13 H132 1.115 1.095
P16 O20 1.554 1.490
P16 O21 1.574 1.610
P16 O1   1.612
O21 C23 1.426 1.416
C23 C24 1.522 1.514
C23 H231 1.115 1.094
C23 H232 1.115 1.094
C24 C27 1.552 1.509
C24 O28 1.403 1.430
C24 H24 1.115 1.095
C27 O31 1.398 1.428
C27 H271 1.115 1.097
C27 H272 1.116 1.093
O28 C30 1.590 1.438
C30 O31 1.590 1.437
C30 C34 1.532 1.524
C30 C38 1.530 1.523
C34 H341 1.115 1.095
C34 H342 1.115 1.094
C34 H343 1.115 1.094
C38 H381 1.115 1.094
C38 H382 1.115 1.094
C38 H383 1.115 1.094
O1 HO1   0.981

Bond Angles for RIL

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 C1 H11 109.4 121.5
C2 C1 H12 133.2 120.4
C1 C2 C5 109.4 124.0
C1 C2 H2 120.6 118.6
H11 C1 H12 117.4 118.0
C5 C2 H2 130.0 117.4
C2 C5 C7 108.9 111.3
C2 C5 H51 112.4 110.7
C2 C5 H52 112.5 108.5
C7 C5 H51 112.4 109.6
C7 C5 H52 112.4 109.8
C5 C7 C10 109.2 111.2
C5 C7 H71 112.3 109.7
C5 C7 H72 112.3 109.6
H51 C5 H52 98.0 106.8
C10 C7 H71 112.3 109.5
C10 C7 H72 112.3 109.8
C7 C10 C13 108.9 112.2
C7 C10 H101 112.4 109.4
C7 C10 H102 112.4 109.5
H71 C7 H72 98.1 107.0
C13 C10 H101 112.4 108.9
C13 C10 H102 112.4 109.2
C10 C13 P16 109.1 113.6
C10 C13 H131 112.3 110.6
C10 C13 H132 112.3 109.1
H101 C10 H102 98.1 107.4
P16 C13 H131 112.3 108.6
P16 C13 H132 112.3 107.2
C13 P16 O20 108.6 112.8
C13 P16 O21 110.9 105.1
C13 P16 O1   103.3
H131 C13 H132 98.1 107.4
O20 P16 O21 107.0 115.6
O20 P16 O1   115.5
O21 P16 O1   103.0
P16 O21 C23 112.5 121.5
P16 O1 HO1   118.0
O21 C23 C24 109.1 109.0
O21 C23 H231 112.3 108.8
O21 C23 H232 112.3 108.8
C24 C23 H231 112.4 110.5
C24 C23 H232 112.3 110.5
C23 C24 C27 109.8 114.0
C23 C24 O28 108.7 110.6
C23 C24 H24 109.9 110.2
H231 C23 H232 98.1 109.2
C27 C24 O28 109.9 103.0
C27 C24 H24 108.7 111.0
C24 C27 O31 110.4 103.1
C24 C27 H271 111.8 112.3
C24 C27 H272 111.9 113.4
O28 C24 H24 109.8 107.7
C24 O28 C30 107.1 104.7
O31 C27 H271 111.9 108.1
O31 C27 H272 111.9 110.5
C27 O31 C30 106.8 104.6
H271 C27 H272 98.5 109.2
O28 C30 O31 105.0 109.6
O28 C30 C34 110.3 109.3
O28 C30 C38 110.3 108.6
O31 C30 C34 110.2 108.6
O31 C30 C38 110.6 109.3
C34 C30 C38 110.3 111.4
C30 C34 H341 111.9 110.5
C30 C34 H342 110.3 110.6
C30 C34 H343 111.9 110.6
C30 C38 H381 111.9 110.6
C30 C38 H382 110.3 110.5
C30 C38 H383 111.9 110.5
H341 C34 H342 111.9 108.3
H341 C34 H343 98.5 108.3
H342 C34 H343 111.9 108.4
H381 C38 H382 111.9 108.4
H381 C38 H383 98.5 108.4
H382 C38 H383 111.9 108.3

Torsion Angles for RIL

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
H11 C1 C2 H12 180.0 180.0
C5 C2 C1 H2 180.0 180.7
C1 C2 C5 C7 180.3 237.8
C1 C2 C5 H51 55.0 359.9
C1 C2 C5 H52 305.5 116.8
C2 C1 H11 H12 180.0 180.0
H11 C1 C2 C5 180.0 180.0
H11 C1 C2 H2 0.0 359.2
C2 C1 H12 H11 180.0 180.0
H12 C1 C2 C5 360.0 0.0
H12 C1 C2 H2 180.0 179.3
C5 C2 C1 H11 180.0 180.0
C5 C2 C1 H12 360.0 0.0
C1 C2 C5 H2 180.0 179.3
C7 C5 C2 H51 125.3 237.8
C7 C5 C2 H52 234.7 120.9
C2 C5 C7 C10 180.1 181.3
C2 C5 C7 H71 54.8 60.0
C2 C5 C7 H72 305.4 302.8
H51 C5 C2 H52 109.5 243.1
H2 C2 C1 H11 0.0 359.2
H2 C2 C1 H12 180.0 179.3
C1 C2 H2 C5 180.0 180.7
H2 C2 C5 C7 0.3 58.5
H2 C2 C5 H51 235.0 180.7
H2 C2 C5 H52 125.5 297.6
C7 C5 C2 H2 0.3 58.5
C2 C5 C7 H51 234.8 122.8
C2 C5 C7 H52 125.3 239.9
H51 C5 C7 H52 250.5 117.1
C10 C7 C5 H71 125.3 121.3
C10 C7 C5 H72 234.7 238.5
C5 C7 C10 C13 180.9 179.0
C5 C7 C10 H101 55.7 300.0
C5 C7 C10 H102 306.2 57.5
H71 C7 C5 H72 109.4 117.2
H51 C5 C2 H2 235.0 180.7
C2 C5 H51 C7 123.3 236.9
C2 C5 H51 H52 241.6 117.9
C7 C5 H51 H52 118.4 241.1
H51 C5 C7 C10 305.3 58.5
H51 C5 C7 H71 180.1 297.2
H51 C5 C7 H72 70.6 180.0
H52 C5 C2 H2 125.5 297.6
C2 C5 H52 C7 236.7 121.8
C2 C5 H52 H51 118.3 240.7
C7 C5 H52 H51 241.6 118.8
H52 C5 C7 C10 54.8 301.4
H52 C5 C7 H71 289.5 180.1
H52 C5 C7 H72 180.1 62.9
C10 C7 C5 H51 305.3 58.5
C10 C7 C5 H52 54.8 301.4
C5 C7 C10 H71 234.7 238.6
C5 C7 C10 H72 125.3 121.4
H71 C7 C10 H72 250.5 242.8
C13 C10 C7 H101 125.3 239.0
C13 C10 C7 H102 234.7 121.5
C7 C10 C13 P16 179.1 177.5
C7 C10 C13 H131 53.8 300.0
C7 C10 C13 H132 304.3 57.9
H101 C10 C7 H102 109.5 242.4
H71 C7 C5 H51 180.1 297.2
H71 C7 C5 H52 289.5 180.1
C5 C7 H71 C10 123.6 122.3
C5 C7 H71 H72 241.8 241.2
C10 C7 H71 H72 118.2 118.9
H71 C7 C10 C13 306.2 300.4
H71 C7 C10 H101 180.9 61.4
H71 C7 C10 H102 71.5 178.9
H72 C7 C5 H51 70.6 180.0
H72 C7 C5 H52 180.1 62.9
C5 C7 H72 C10 236.4 237.6
C5 C7 H72 H71 118.2 118.9
C10 C7 H72 H71 241.8 241.3
H72 C7 C10 C13 55.6 57.6
H72 C7 C10 H101 290.4 178.6
H72 C7 C10 H102 180.9 296.1
C13 C10 C7 H71 306.2 300.4
C13 C10 C7 H72 55.6 57.6
C7 C10 C13 H101 234.8 121.3
C7 C10 C13 H102 125.2 238.3
H101 C10 C13 H102 250.5 117.0
P16 C13 C10 H131 125.3 237.5
P16 C13 C10 H132 234.8 119.5
C10 C13 P16 O20 63.0 300.0
C10 C13 P16 O21 180.4 66.9
C10 C13 P16 O1   174.6
H131 C13 C10 H132 109.5 242.0
H101 C10 C7 H71 180.9 61.4
H101 C10 C7 H72 290.4 178.6
C7 C10 H101 C13 123.3 237.0
C7 C10 H101 H102 241.7 118.9
C13 C10 H101 H102 118.4 241.8
H101 C10 C13 P16 304.3 56.2
H101 C10 C13 H131 179.0 178.7
H101 C10 C13 H132 69.6 296.7
H102 C10 C7 H71 71.5 178.9
H102 C10 C7 H72 180.9 296.1
C7 C10 H102 C13 236.7 123.3
C7 C10 H102 H101 118.3 241.2
C13 C10 H102 H101 241.6 117.9
H102 C10 C13 P16 53.8 299.2
H102 C10 C13 H131 288.6 61.6
H102 C10 C13 H132 179.1 179.6
P16 C13 C10 H101 304.3 56.2
P16 C13 C10 H102 53.8 299.2
C10 C13 P16 H131 234.8 123.6
C10 C13 P16 H132 125.3 239.4
H131 C13 P16 H132 250.5 115.8
O20 P16 C13 O21 242.6 233.1
O20 P16 C13 O1   125.5
O21 P16 C13 O1   252.3
C13 P16 O21 C23 54.9 60.0
C13 P16 O1 HO1   130.1
H131 C13 C10 H101 179.0 178.7
H131 C13 C10 H102 288.6 61.6
C10 C13 H131 P16 123.5 234.6
C10 C13 H131 H132 241.7 119.0
P16 C13 H131 H132 118.3 244.4
H131 C13 P16 O20 188.3 176.5
H131 C13 P16 O21 305.7 303.3
H131 C13 P16 O1   51.0
H132 C13 C10 H101 69.6 296.7
H132 C13 C10 H102 179.1 179.6
C10 C13 H132 P16 236.5 123.5
C10 C13 H132 H131 118.2 240.1
P16 C13 H132 H131 241.7 116.6
H132 C13 P16 O20 297.8 60.7
H132 C13 P16 O21 55.1 187.5
H132 C13 P16 O1   295.2
O20 P16 C13 H131 188.3 176.5
O20 P16 C13 H132 297.8 60.7
C13 P16 O20 O21 119.8 121.0
C13 P16 O20 O1   241.4
O21 P16 O20 O1   120.4
O20 P16 O21 C23 173.2 185.1
O20 P16 O1 HO1   6.4
O21 P16 C13 H131 305.7 303.3
O21 P16 C13 H132 55.1 187.5
C13 P16 O21 O20 241.7 234.9
C13 P16 O21 O1   107.9
O20 P16 O21 O1   233.0
O21 P16 O1 HO1   239.3
P16 O21 C23 C24 168.2 180.0
P16 O21 C23 H231 42.9 300.6
P16 O21 C23 H232 293.5 59.4
O1 P16 C13 H131   51.0
O1 P16 C13 H132   295.2
C13 P16 O1 O20   123.7
C13 P16 O1 O21   250.8
O20 P16 O1 O21   127.0
O1 P16 O21 C23   312.1
C23 O21 P16 O1   312.1
C24 C23 O21 H231 125.3 239.4
C24 C23 O21 H232 234.7 120.6
O21 C23 C24 C27 66.7 179.5
O21 C23 C24 O28 306.4 64.1
O21 C23 C24 H24 186.2 305.1
H231 C23 O21 H232 109.5 241.2
O21 C23 C24 H231 234.7 119.5
O21 C23 C24 H232 125.2 240.5
H231 C23 C24 H232 250.5 121.0
C27 C24 C23 O28 120.3 115.5
C27 C24 C23 H24 240.5 234.4
C23 C24 C27 O31 234.4 200.9
C23 C24 C27 H271 109.1 317.0
C23 C24 C27 H272 359.6 81.4
O28 C24 C23 H24 120.2 119.0
C23 C24 O28 C30 120.6 153.1
O21 C23 H231 C24 123.5 240.4
O21 C23 H231 H232 241.8 118.6
C24 C23 H231 H232 118.3 238.2
H231 C23 C24 C27 192.0 60.0
H231 C23 C24 O28 71.7 304.6
H231 C23 C24 H24 311.5 185.6
O21 C23 H232 C24 236.5 119.7
O21 C23 H232 H231 118.2 241.4
C24 C23 H232 H231 241.7 121.8
H232 C23 C24 C27 301.4 299.0
H232 C23 C24 O28 181.2 183.6
H232 C23 C24 H24 61.0 64.6
C27 C24 C23 H231 192.0 60.0
C27 C24 C23 H232 301.4 299.0
C23 C24 C27 O28 240.5 240.2
C23 C24 C27 H24 120.3 125.1
O28 C24 C27 H24 239.8 245.0
C27 C24 O28 C30 0.4 31.0
O31 C27 C24 H271 125.3 243.9
O31 C27 C24 H272 234.7 119.5
C24 C27 O31 C30 8.8 31.2
H271 C27 C24 H272 109.4 235.6
O28 C24 C23 H231 71.7 304.6
O28 C24 C23 H232 181.2 183.6
C23 C24 O28 C27 120.2 122.1
C23 C24 O28 H24 239.7 239.5
C27 C24 O28 H24 119.5 117.4
O28 C24 C27 O31 353.9 320.8
O28 C24 C27 H271 228.6 76.9
O28 C24 C27 H272 119.1 201.2
C24 O28 C30 O31 4.6 347.6
C24 O28 C30 C34 245.9 106.5
C24 O28 C30 C38 123.8 228.2
H24 C24 C23 H231 311.5 185.6
H24 C24 C23 H232 61.0 64.6
C23 C24 H24 C27 239.8 232.8
C23 C24 H24 O28 119.5 120.7
C27 C24 H24 O28 239.7 247.9
H24 C24 C27 O31 114.1 75.8
H24 C24 C27 H271 348.8 191.9
H24 C24 C27 H272 239.4 316.3
H24 C24 O28 C30 240.9 273.6
O31 C27 C24 O28 353.9 320.8
O31 C27 C24 H24 114.1 75.8
C24 C27 O31 H271 234.7 119.1
C24 C27 O31 H272 125.3 238.5
H271 C27 O31 H272 250.5 119.4
O28 C30 O31 C27 351.7 347.3
C27 O31 C30 C34 110.4 228.0
C27 O31 C30 C38 232.7 106.3
H271 C27 C24 O28 228.6 76.9
H271 C27 C24 H24 348.8 191.9
C24 C27 H271 O31 124.5 246.9
C24 C27 H271 H272 242.2 126.7
O31 C27 H271 H272 117.8 239.8
H271 C27 O31 C30 134.1 272.1
H272 C27 C24 O28 119.1 201.2
H272 C27 C24 H24 239.4 316.3
C24 C27 H272 O31 235.5 115.2
C24 C27 H272 H271 117.7 234.0
O31 C27 H272 H271 242.2 118.7
H272 C27 O31 C30 243.5 152.7
C30 O28 C24 H24 240.9 273.6
C27 O31 C30 O28 351.7 347.3
O31 C30 O28 C34 118.7 241.1
O31 C30 O28 C38 240.8 119.4
C34 C30 O28 C38 122.1 238.3
O28 C30 C34 H341 54.7 155.6
O28 C30 C34 H342 180.0 275.6
O28 C30 C34 H343 305.2 35.7
O28 C30 C38 H381 54.7 270.3
O28 C30 C38 H382 180.0 30.3
O28 C30 C38 H383 305.3 150.3
C30 O31 C27 H271 134.1 272.1
C30 O31 C27 H272 243.5 152.7
O28 C30 O31 C34 241.3 119.3
O28 C30 O31 C38 119.0 241.1
C34 C30 O31 C38 237.7 121.7
O31 C30 C34 H341 299.3 275.2
O31 C30 C34 H342 64.5 35.1
O31 C30 C34 H343 189.8 155.2
O31 C30 C38 H381 170.4 150.8
O31 C30 C38 H382 295.7 270.7
O31 C30 C38 H383 61.0 30.7
O28 C30 C34 O31 115.5 240.4
O28 C30 C34 C38 237.9 120.0
O31 C30 C34 C38 122.4 239.5
C34 C30 C38 H381 292.6 30.7
C34 C30 C38 H382 57.9 150.7
C34 C30 C38 H383 183.2 270.7
H341 C34 C30 H342 234.7 240.0
H341 C34 C30 H343 109.5 119.9
H342 C34 C30 H343 234.7 239.9
O28 C30 C38 O31 244.3 119.6
O28 C30 C38 C34 122.1 239.6
O31 C30 C38 C34 237.8 120.0
C38 C30 C34 H341 176.9 35.6
C38 C30 C34 H342 302.1 155.6
C38 C30 C34 H343 67.4 275.7
H381 C38 C30 H382 234.7 240.0
H381 C38 C30 H383 109.5 120.0
H382 C38 C30 H383 234.8 240.0
H341 C34 C30 C38 176.9 35.6
C30 C34 H341 H342 124.4 121.3
C30 C34 H341 H343 242.2 238.7
H342 C34 H341 H343 117.8 117.4
H342 C34 C30 C38 302.1 155.6
C30 C34 H342 H341 234.7 238.7
C30 C34 H342 H343 125.3 121.4
H341 C34 H342 H343 250.5 242.7
H343 C34 C30 C38 67.4 275.7
C30 C34 H343 H341 117.8 121.2
C30 C34 H343 H342 235.6 238.6
H341 C34 H343 H342 117.8 117.3
C30 C38 H381 H382 124.4 121.3
C30 C38 H381 H383 242.2 238.7
H382 C38 H381 H383 117.8 117.4
C30 C38 H382 H381 234.7 238.7
C30 C38 H382 H383 125.3 121.3
H381 C38 H382 H383 250.5 242.6
C30 C38 H383 H381 117.8 121.3
C30 C38 H383 H382 235.6 238.7
H381 C38 H383 H382 117.8 117.4