PDB Chemical Component RI9
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for RI9
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O1 |
C2 |
1.226 |
1.215 |
| C2 |
N11 |
1.332 |
1.347 |
| C2 |
N3 |
1.334 |
1.348 |
| N3 |
C4 |
1.418 |
1.391 |
| N3 |
HN3 |
1.000 |
0.970 |
| C4 |
N5 |
1.346 |
1.332 |
| C4 |
C9 |
1.413 |
1.390 |
| N5 |
C6 |
1.345 |
1.317 |
| C6 |
N7 |
1.346 |
1.318 |
| C6 |
H6 |
1.080 |
1.081 |
| C8 |
N7 |
1.348 |
1.332 |
| C9 |
C8 |
1.411 |
1.392 |
| C8 |
N10 |
1.358 |
1.386 |
| C9 |
H9 |
1.080 |
1.080 |
| C27 |
N10 |
1.576 |
1.465 |
| N10 |
HN10 |
1.000 |
0.970 |
| C12 |
N11 |
1.422 |
1.401 |
| N11 |
HN11 |
1.000 |
0.970 |
| C13 |
C12 |
1.409 |
1.388 |
| C12 |
C17 |
1.411 |
1.391 |
| F19 |
C13 |
1.354 |
1.351 |
| C14 |
C13 |
1.411 |
1.389 |
| N20 |
C14 |
1.336 |
1.400 |
| C14 |
C15 |
1.410 |
1.388 |
| C15 |
C16 |
1.409 |
1.382 |
| C15 |
H15 |
1.079 |
1.081 |
| C16 |
C17 |
1.407 |
1.383 |
| C16 |
H16 |
1.080 |
1.080 |
| C17 |
F18 |
1.343 |
1.351 |
| S21 |
N20 |
1.726 |
1.656 |
| N20 |
HN20 |
1.000 |
0.970 |
| O24 |
S21 |
1.465 |
1.421 |
| S21 |
C22 |
1.841 |
1.814 |
| S21 |
O23 |
1.467 |
1.421 |
| C25 |
C22 |
1.531 |
1.530 |
| C22 |
H22 |
1.100 |
1.090 |
| C22 |
H22A |
1.100 |
1.090 |
| C25 |
C26 |
1.552 |
1.529 |
| C25 |
H25 |
1.100 |
1.090 |
| C25 |
H25A |
1.100 |
1.089 |
| C26 |
H26 |
1.100 |
1.090 |
| C26 |
H26A |
1.100 |
1.090 |
| C26 |
H26B |
1.100 |
1.090 |
| C27 |
C28 |
1.778 |
1.530 |
| C27 |
H27 |
1.100 |
1.090 |
| C27 |
H27A |
1.100 |
1.090 |
| C28 |
O29 |
1.522 |
1.429 |
| C28 |
H28 |
1.100 |
1.090 |
| C28 |
H28A |
1.100 |
1.089 |
| O29 |
HO29 |
0.950 |
0.967 |
Bond Angles for RI9
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O1 |
C2 |
N11 |
123.2 |
120.0 |
| O1 |
C2 |
N3 |
123.2 |
120.0 |
| N3 |
C2 |
N11 |
113.6 |
120.0 |
| C2 |
N11 |
HN11 |
116.0 |
120.0 |
| C2 |
N3 |
C4 |
130.9 |
120.0 |
| C2 |
N3 |
HN3 |
114.5 |
120.0 |
| C4 |
N3 |
HN3 |
114.6 |
120.0 |
| N3 |
C4 |
N5 |
124.5 |
120.5 |
| N3 |
C4 |
C9 |
115.4 |
120.5 |
| N5 |
C4 |
C9 |
120.1 |
119.1 |
| C4 |
N5 |
C6 |
116.8 |
120.8 |
| C4 |
C9 |
C8 |
119.3 |
118.3 |
| C4 |
C9 |
H9 |
120.4 |
120.9 |
| N5 |
C6 |
N7 |
127.0 |
122.0 |
| N5 |
C6 |
H6 |
116.5 |
119.0 |
| N7 |
C6 |
H6 |
116.5 |
119.0 |
| C9 |
C8 |
N10 |
121.4 |
120.5 |
| C8 |
N10 |
HN10 |
105.3 |
120.0 |
| C27 |
N10 |
HN10 |
105.2 |
120.0 |
| C12 |
N11 |
HN11 |
116.0 |
120.0 |
| C13 |
C12 |
C17 |
119.1 |
119.9 |
| C12 |
C17 |
C16 |
120.9 |
120.0 |
| C12 |
C17 |
F18 |
120.3 |
120.0 |
| C14 |
C15 |
C16 |
120.4 |
120.1 |
| C14 |
C15 |
H15 |
119.8 |
120.0 |
| C16 |
C15 |
H15 |
119.8 |
120.0 |
| C15 |
C16 |
C17 |
119.4 |
120.2 |
| C15 |
C16 |
H16 |
120.3 |
119.9 |
| C17 |
C16 |
H16 |
120.3 |
119.9 |
| C16 |
C17 |
F18 |
118.8 |
120.0 |
| S21 |
N20 |
HN20 |
104.5 |
120.0 |
| C22 |
S21 |
O23 |
110.5 |
110.5 |
| S21 |
C22 |
H22 |
109.0 |
109.5 |
| S21 |
C22 |
H22A |
109.0 |
109.5 |
| C25 |
C22 |
H22 |
109.0 |
109.4 |
| C25 |
C22 |
H22A |
109.0 |
109.5 |
| H22 |
C22 |
H22A |
109.4 |
109.5 |
| C26 |
C25 |
H25 |
109.1 |
109.5 |
| C26 |
C25 |
H25A |
109.1 |
109.5 |
| C25 |
C26 |
H26 |
109.5 |
109.5 |
| C25 |
C26 |
H26A |
109.5 |
109.5 |
| C25 |
C26 |
H26B |
109.4 |
109.5 |
| H25 |
C25 |
H25A |
109.5 |
109.5 |
| H26 |
C26 |
H26A |
109.5 |
109.5 |
| H26 |
C26 |
H26B |
109.5 |
109.4 |
| H26A |
C26 |
H26B |
109.5 |
109.5 |
| C28 |
C27 |
H27 |
112.2 |
109.5 |
| C28 |
C27 |
H27A |
112.2 |
109.5 |
| C27 |
C28 |
O29 |
97.7 |
109.5 |
| C27 |
C28 |
H28 |
112.3 |
109.5 |
| C27 |
C28 |
H28A |
112.3 |
109.5 |
| H27 |
C27 |
H27A |
109.5 |
109.5 |
| O29 |
C28 |
H28 |
112.3 |
109.4 |
| O29 |
C28 |
H28A |
112.3 |
109.5 |
| C28 |
O29 |
HO29 |
109.5 |
114.0 |
| H28 |
C28 |
H28A |
109.5 |
109.5 |
Torsion Angles for RI9
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N3 |
C2 |
O1 |
N11 |
180.6 |
180.3 |
| O1 |
C2 |
N11 |
HN11 |
181.6 |
174.9 |
| O1 |
C2 |
N3 |
C4 |
180.7 |
5.3 |
| O1 |
C2 |
N3 |
HN3 |
0.7 |
185.3 |
| O1 |
C2 |
N11 |
N3 |
180.5 |
180.3 |
| N11 |
C2 |
N3 |
C4 |
1.2 |
185.6 |
| N11 |
C2 |
N3 |
HN3 |
181.2 |
5.6 |
| C12 |
N11 |
C2 |
HN11 |
180.0 |
180.1 |
| O1 |
C2 |
N3 |
N11 |
179.5 |
179.7 |
| N3 |
C2 |
N11 |
HN11 |
1.1 |
354.6 |
| C4 |
N3 |
C2 |
HN3 |
180.0 |
180.0 |
| C2 |
N3 |
C4 |
N5 |
7.3 |
5.6 |
| C2 |
N3 |
C4 |
C9 |
186.4 |
185.4 |
| C4 |
N3 |
C2 |
N11 |
1.2 |
185.6 |
| C2 |
N3 |
C4 |
HN3 |
180.0 |
180.0 |
| N5 |
C4 |
N3 |
C9 |
180.9 |
180.2 |
| N3 |
C4 |
N5 |
C6 |
179.6 |
180.0 |
| N3 |
C4 |
C9 |
C8 |
180.3 |
179.8 |
| N3 |
C4 |
C9 |
H9 |
0.3 |
359.9 |
| HN3 |
N3 |
C2 |
N11 |
181.2 |
5.6 |
| C2 |
N3 |
HN3 |
C4 |
180.0 |
180.0 |
| HN3 |
N3 |
C4 |
N5 |
187.3 |
185.6 |
| HN3 |
N3 |
C4 |
C9 |
6.4 |
5.4 |
| N5 |
C4 |
N3 |
HN3 |
187.3 |
185.6 |
| N3 |
C4 |
N5 |
C9 |
179.0 |
179.8 |
| N5 |
C4 |
C9 |
C8 |
359.4 |
359.6 |
| N5 |
C4 |
C9 |
H9 |
179.5 |
179.7 |
| C4 |
N5 |
C6 |
N7 |
359.8 |
0.1 |
| C4 |
N5 |
C6 |
H6 |
179.8 |
179.9 |
| C9 |
C4 |
N3 |
HN3 |
6.4 |
5.4 |
| N3 |
C4 |
C9 |
N5 |
180.9 |
180.2 |
| C9 |
C4 |
N5 |
C6 |
0.6 |
0.2 |
| C4 |
C9 |
C8 |
N10 |
180.2 |
180.2 |
| C6 |
N5 |
C4 |
C9 |
0.6 |
0.2 |
| N7 |
C6 |
N5 |
H6 |
180.0 |
180.1 |
| N5 |
C6 |
N7 |
H6 |
180.0 |
179.9 |
| N5 |
C6 |
H6 |
N7 |
180.0 |
180.1 |
| C4 |
C9 |
C8 |
N7 |
0.1 |
0.4 |
| C8 |
N7 |
C6 |
H6 |
179.8 |
180.1 |
| C4 |
C9 |
C8 |
H9 |
180.0 |
180.1 |
| C9 |
C8 |
N10 |
HN10 |
79.9 |
180.1 |
| C27 |
N10 |
C8 |
HN10 |
237.8 |
180.1 |
| C4 |
C9 |
H9 |
C8 |
180.0 |
179.9 |
| H9 |
C9 |
C8 |
N10 |
0.2 |
0.1 |
| C8 |
N10 |
C27 |
HN10 |
122.2 |
179.9 |
| C2 |
N11 |
C12 |
HN11 |
180.0 |
179.9 |
| C13 |
C12 |
N11 |
HN11 |
240.8 |
227.2 |
| C13 |
C12 |
C17 |
C16 |
359.9 |
359.5 |
| C13 |
C12 |
C17 |
F18 |
179.8 |
179.7 |
| C17 |
C12 |
N11 |
HN11 |
59.7 |
46.9 |
| C15 |
C16 |
C17 |
C12 |
0.5 |
0.5 |
| C12 |
C17 |
C16 |
H16 |
180.5 |
180.3 |
| C16 |
C17 |
C12 |
F18 |
180.0 |
179.7 |
| C14 |
C13 |
C12 |
C17 |
1.6 |
0.3 |
| N20 |
C14 |
C15 |
H15 |
356.8 |
0.0 |
| C16 |
C15 |
C14 |
H15 |
180.0 |
180.0 |
| C14 |
C15 |
C16 |
C17 |
357.6 |
359.8 |
| C14 |
C15 |
C16 |
H16 |
177.6 |
180.0 |
| C12 |
C17 |
C16 |
C15 |
0.5 |
0.5 |
| C14 |
C15 |
C16 |
H15 |
180.0 |
180.0 |
| C17 |
C16 |
C15 |
H16 |
180.0 |
179.8 |
| C15 |
C16 |
C17 |
F18 |
180.6 |
180.2 |
| C14 |
C15 |
H15 |
C16 |
180.0 |
180.0 |
| H15 |
C15 |
C16 |
C17 |
177.6 |
179.8 |
| H15 |
C15 |
C16 |
H16 |
357.6 |
0.0 |
| C12 |
C17 |
C16 |
F18 |
180.0 |
180.3 |
| C17 |
C16 |
C15 |
H15 |
177.6 |
179.8 |
| C15 |
C16 |
C17 |
H16 |
180.0 |
180.2 |
| H16 |
C16 |
C15 |
H15 |
357.6 |
0.0 |
| C15 |
C16 |
H16 |
C17 |
180.0 |
179.8 |
| H16 |
C16 |
C17 |
F18 |
0.5 |
360.0 |
| C12 |
C17 |
F18 |
C16 |
180.0 |
179.7 |
| F18 |
C17 |
C16 |
H16 |
0.5 |
360.0 |
| O24 |
S21 |
N20 |
HN20 |
61.3 |
124.2 |
| O24 |
S21 |
C22 |
H22 |
145.5 |
51.6 |
| O24 |
S21 |
C22 |
H22A |
264.9 |
171.6 |
| C22 |
S21 |
N20 |
HN20 |
174.9 |
240.2 |
| C25 |
C22 |
S21 |
H22 |
239.7 |
240.0 |
| C25 |
C22 |
S21 |
H22A |
120.3 |
120.1 |
| H22 |
C22 |
S21 |
H22A |
240.6 |
240.0 |
| O23 |
S21 |
N20 |
HN20 |
291.8 |
356.2 |
| O23 |
S21 |
C22 |
H22 |
278.4 |
188.4 |
| O23 |
S21 |
C22 |
H22A |
37.8 |
308.4 |
| S21 |
C22 |
C25 |
H22 |
120.3 |
120.0 |
| S21 |
C22 |
C25 |
H22A |
239.7 |
240.0 |
| H22 |
C22 |
C25 |
H22A |
119.4 |
120.0 |
| H22 |
C22 |
S21 |
O23 |
278.4 |
188.4 |
| S21 |
C22 |
H22 |
H22A |
119.1 |
120.0 |
| C25 |
C22 |
H22 |
H22A |
240.8 |
240.0 |
| H22A |
C22 |
S21 |
O23 |
37.8 |
308.4 |
| S21 |
C22 |
H22A |
H22 |
240.9 |
240.0 |
| C25 |
C22 |
H22A |
H22 |
119.1 |
120.0 |
| C26 |
C25 |
C22 |
H22 |
358.7 |
60.0 |
| C26 |
C25 |
C22 |
H22A |
239.3 |
300.1 |
| H25 |
C25 |
C26 |
H25A |
119.5 |
120.0 |
| H26 |
C26 |
C25 |
H26A |
240.0 |
240.0 |
| H26 |
C26 |
C25 |
H26B |
120.0 |
120.0 |
| H26A |
C26 |
C25 |
H26B |
240.0 |
240.0 |
| H25 |
C25 |
C22 |
H22 |
119.0 |
180.0 |
| H25 |
C25 |
C22 |
H22A |
359.5 |
60.0 |
| C26 |
C25 |
H25 |
H25A |
240.7 |
240.0 |
| H25 |
C25 |
C26 |
H26 |
59.8 |
60.0 |
| H25 |
C25 |
C26 |
H26A |
179.8 |
180.0 |
| H25 |
C25 |
C26 |
H26B |
299.8 |
300.0 |
| H25A |
C25 |
C22 |
H22 |
238.4 |
300.0 |
| H25A |
C25 |
C22 |
H22A |
119.0 |
180.0 |
| C26 |
C25 |
H25A |
H25 |
119.3 |
120.0 |
| H25A |
C25 |
C26 |
H26 |
300.3 |
300.0 |
| H25A |
C25 |
C26 |
H26A |
60.3 |
60.0 |
| H25A |
C25 |
C26 |
H26B |
180.3 |
180.0 |
| H26 |
C26 |
C25 |
H25 |
59.8 |
60.0 |
| H26 |
C26 |
C25 |
H25A |
300.3 |
300.0 |
| C25 |
C26 |
H26 |
H26A |
120.0 |
120.0 |
| C25 |
C26 |
H26 |
H26B |
240.0 |
240.0 |
| H26A |
C26 |
H26 |
H26B |
120.0 |
120.0 |
| H26A |
C26 |
C25 |
H25 |
179.8 |
180.0 |
| H26A |
C26 |
C25 |
H25A |
60.3 |
60.0 |
| C25 |
C26 |
H26A |
H26 |
240.0 |
240.0 |
| C25 |
C26 |
H26A |
H26B |
120.0 |
120.0 |
| H26 |
C26 |
H26A |
H26B |
240.0 |
240.0 |
| H26B |
C26 |
C25 |
H25 |
299.8 |
300.0 |
| H26B |
C26 |
C25 |
H25A |
180.3 |
180.0 |
| C25 |
C26 |
H26B |
H26 |
120.0 |
120.0 |
| C25 |
C26 |
H26B |
H26A |
240.0 |
240.0 |
| H26 |
C26 |
H26B |
H26A |
120.0 |
120.0 |
| C28 |
C27 |
N10 |
HN10 |
355.6 |
0.1 |
| H27 |
C27 |
C28 |
H27A |
123.8 |
120.0 |
| O29 |
C28 |
C27 |
H28 |
241.9 |
240.0 |
| O29 |
C28 |
C27 |
H28A |
118.0 |
120.0 |
| C27 |
C28 |
O29 |
HO29 |
180.0 |
180.0 |
| H28 |
C28 |
C27 |
H28A |
236.1 |
240.0 |
| H27 |
C27 |
N10 |
HN10 |
113.7 |
120.1 |
| C28 |
C27 |
H27 |
H27A |
234.7 |
240.0 |
| H27 |
C27 |
C28 |
O29 |
2.0 |
305.0 |
| H27 |
C27 |
C28 |
H28 |
120.0 |
65.0 |
| H27 |
C27 |
C28 |
H28A |
243.9 |
185.0 |
| H27A |
C27 |
N10 |
HN10 |
237.4 |
240.1 |
| C28 |
C27 |
H27A |
H27 |
125.3 |
120.0 |
| H27A |
C27 |
C28 |
O29 |
238.2 |
185.0 |
| H27A |
C27 |
C28 |
H28 |
356.2 |
305.0 |
| H27A |
C27 |
C28 |
H28A |
120.1 |
65.0 |
| O29 |
C28 |
C27 |
H27 |
2.0 |
305.0 |
| O29 |
C28 |
C27 |
H27A |
238.2 |
185.0 |
| C27 |
C28 |
O29 |
H28 |
118.0 |
120.0 |
| C27 |
C28 |
O29 |
H28A |
242.0 |
240.0 |
| H28 |
C28 |
O29 |
H28A |
123.9 |
120.0 |
| H28 |
C28 |
C27 |
H27 |
120.0 |
65.0 |
| H28 |
C28 |
C27 |
H27A |
356.2 |
305.0 |
| C27 |
C28 |
H28 |
O29 |
251.0 |
240.0 |
| C27 |
C28 |
H28 |
H28A |
125.5 |
120.0 |
| O29 |
C28 |
H28 |
H28A |
234.5 |
240.0 |
| H28 |
C28 |
O29 |
HO29 |
62.0 |
60.0 |
| H28A |
C28 |
C27 |
H27 |
243.9 |
185.0 |
| H28A |
C28 |
C27 |
H27A |
120.1 |
65.0 |
| C27 |
C28 |
H28A |
O29 |
109.0 |
120.0 |
| C27 |
C28 |
H28A |
H28 |
234.5 |
240.0 |
| O29 |
C28 |
H28A |
H28 |
125.5 |
120.0 |
| H28A |
C28 |
O29 |
HO29 |
298.0 |
300.0 |
| HO29 |
O29 |
C28 |
H28 |
62.0 |
60.0 |
| HO29 |
O29 |
C28 |
H28A |
298.0 |
300.0 |