PDB Chemical Component RI8
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for RI8
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N6 |
C1 |
1.351 |
1.311 |
| C1 |
N2 |
1.351 |
1.321 |
| C1 |
H1 |
1.080 |
1.080 |
| N2 |
C3 |
1.345 |
1.326 |
| C4 |
C3 |
1.422 |
1.407 |
| C3 |
N10 |
1.358 |
1.385 |
| C5 |
C4 |
1.411 |
1.392 |
| C4 |
S7 |
1.746 |
1.755 |
| C9 |
C5 |
1.457 |
1.458 |
| N6 |
C5 |
1.345 |
1.348 |
| C8 |
S7 |
1.739 |
1.701 |
| C9 |
C8 |
1.423 |
1.353 |
| C8 |
H8 |
1.080 |
1.080 |
| C11 |
C9 |
1.416 |
1.469 |
| N10 |
HN10 |
0.999 |
0.970 |
| N10 |
HN1A |
1.000 |
0.970 |
| O12 |
C11 |
1.233 |
1.217 |
| N13 |
C11 |
1.333 |
1.348 |
| C14 |
N13 |
1.399 |
1.401 |
| N13 |
HN13 |
1.001 |
0.970 |
| C15 |
C14 |
1.398 |
1.389 |
| C14 |
C19 |
1.406 |
1.391 |
| F21 |
C15 |
1.347 |
1.351 |
| C16 |
C15 |
1.412 |
1.389 |
| N20 |
C16 |
1.332 |
1.400 |
| C16 |
C17 |
1.417 |
1.389 |
| C17 |
C18 |
1.409 |
1.383 |
| C17 |
H17 |
1.080 |
1.079 |
| C18 |
C19 |
1.409 |
1.383 |
| C18 |
H18 |
1.080 |
1.079 |
| C19 |
F22 |
1.339 |
1.351 |
| S23 |
N20 |
1.717 |
1.656 |
| N20 |
HN20 |
1.000 |
0.969 |
| O25 |
S23 |
1.471 |
1.421 |
| S23 |
C26 |
1.841 |
1.814 |
| S23 |
O24 |
1.467 |
1.421 |
| C27 |
C26 |
1.532 |
1.530 |
| C26 |
H26 |
1.100 |
1.090 |
| C26 |
H26A |
1.099 |
1.089 |
| C28 |
C27 |
1.529 |
1.530 |
| C27 |
H27 |
1.100 |
1.090 |
| C27 |
H27A |
1.100 |
1.090 |
| C28 |
H28 |
1.100 |
1.090 |
| C28 |
H28A |
1.100 |
1.089 |
| C28 |
H28B |
1.100 |
1.090 |
Bond Angles for RI8
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N6 |
C1 |
H1 |
115.0 |
118.8 |
| N2 |
C1 |
H1 |
115.0 |
118.9 |
| C1 |
N2 |
C3 |
116.3 |
121.0 |
| N2 |
C3 |
N10 |
118.9 |
120.6 |
| C4 |
C3 |
N10 |
123.0 |
120.5 |
| C3 |
N10 |
HN10 |
109.5 |
120.0 |
| C3 |
N10 |
HN1A |
109.5 |
120.0 |
| C5 |
C4 |
S7 |
115.8 |
110.1 |
| C9 |
C8 |
H8 |
124.7 |
124.0 |
| HN10 |
N10 |
HN1A |
109.4 |
120.0 |
| C14 |
N13 |
HN13 |
115.6 |
120.0 |
| C15 |
C14 |
C19 |
120.1 |
119.9 |
| C14 |
C19 |
C18 |
121.4 |
120.0 |
| C14 |
C19 |
F22 |
117.7 |
120.0 |
| C16 |
C17 |
C18 |
121.1 |
120.1 |
| C16 |
C17 |
H17 |
119.5 |
120.0 |
| C18 |
C17 |
H17 |
119.5 |
119.9 |
| C17 |
C18 |
C19 |
118.1 |
120.1 |
| C17 |
C18 |
H18 |
120.9 |
119.9 |
| C19 |
C18 |
H18 |
121.0 |
119.9 |
| C18 |
C19 |
F22 |
120.9 |
120.0 |
| S23 |
N20 |
HN20 |
105.6 |
120.0 |
| O25 |
S23 |
C26 |
106.6 |
110.5 |
| O24 |
S23 |
C26 |
110.1 |
110.5 |
| S23 |
C26 |
H26 |
108.8 |
109.5 |
| S23 |
C26 |
H26A |
108.8 |
109.5 |
| C27 |
C26 |
H26 |
108.8 |
109.5 |
| C27 |
C26 |
H26A |
108.8 |
109.5 |
| H26 |
C26 |
H26A |
109.5 |
109.5 |
| C28 |
C27 |
H27 |
108.8 |
109.5 |
| C28 |
C27 |
H27A |
108.7 |
109.5 |
| H27 |
C27 |
H27A |
109.5 |
109.5 |
| H28 |
C28 |
H28A |
109.5 |
109.5 |
| H28 |
C28 |
H28B |
109.4 |
109.4 |
| H28A |
C28 |
H28B |
109.5 |
109.5 |
Torsion Angles for RI8
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N2 |
C1 |
N6 |
H1 |
180.0 |
179.7 |
| N6 |
C1 |
N2 |
H1 |
180.0 |
180.3 |
| C1 |
N2 |
C3 |
N10 |
180.1 |
180.0 |
| H1 |
C1 |
N2 |
C3 |
179.6 |
179.9 |
| C3 |
N2 |
C1 |
H1 |
179.6 |
179.9 |
| C4 |
C3 |
N2 |
N10 |
180.3 |
180.1 |
| N2 |
C3 |
N10 |
HN10 |
0.0 |
0.0 |
| N2 |
C3 |
N10 |
HN1A |
120.0 |
180.0 |
| N2 |
C3 |
C4 |
N10 |
179.7 |
179.9 |
| C4 |
C3 |
N10 |
HN10 |
179.7 |
180.0 |
| C4 |
C3 |
N10 |
HN1A |
299.7 |
359.9 |
| HN10 |
N10 |
C3 |
HN1A |
240.0 |
180.0 |
| C5 |
C4 |
C3 |
N10 |
180.1 |
180.0 |
| S7 |
C4 |
C3 |
N10 |
0.1 |
0.1 |
| C5 |
N6 |
C1 |
H1 |
180.1 |
179.8 |
| N6 |
C5 |
C4 |
S7 |
180.0 |
179.7 |
| C11 |
C9 |
C8 |
H8 |
359.7 |
0.1 |
| C3 |
N10 |
HN10 |
HN1A |
120.0 |
180.0 |
| C3 |
N10 |
HN1A |
HN10 |
240.0 |
180.0 |
| C15 |
C14 |
N13 |
HN13 |
255.2 |
226.7 |
| C15 |
C14 |
C19 |
C18 |
0.3 |
359.5 |
| C15 |
C14 |
C19 |
F22 |
180.2 |
179.8 |
| C19 |
C14 |
N13 |
HN13 |
75.0 |
46.5 |
| C17 |
C18 |
C19 |
C14 |
0.0 |
0.5 |
| C14 |
C19 |
C18 |
H18 |
180.0 |
180.2 |
| C18 |
C19 |
C14 |
F22 |
180.1 |
179.8 |
| C16 |
C15 |
C14 |
C19 |
359.6 |
0.2 |
| N20 |
C16 |
C17 |
H17 |
359.9 |
359.9 |
| C18 |
C17 |
C16 |
H17 |
180.0 |
180.1 |
| C16 |
C17 |
C18 |
C19 |
359.7 |
359.7 |
| C16 |
C17 |
C18 |
H18 |
179.7 |
180.0 |
| C14 |
C19 |
C18 |
C17 |
0.0 |
0.5 |
| C16 |
C17 |
C18 |
H17 |
180.0 |
179.9 |
| C19 |
C18 |
C17 |
H18 |
180.0 |
179.7 |
| C17 |
C18 |
C19 |
F22 |
180.1 |
180.3 |
| C16 |
C17 |
H17 |
C18 |
180.0 |
180.1 |
| H17 |
C17 |
C18 |
C19 |
179.7 |
179.8 |
| H17 |
C17 |
C18 |
H18 |
359.7 |
0.1 |
| C14 |
C19 |
C18 |
F22 |
179.9 |
180.2 |
| C19 |
C18 |
C17 |
H17 |
179.7 |
179.8 |
| C17 |
C18 |
C19 |
H18 |
180.0 |
180.3 |
| H18 |
C18 |
C17 |
H17 |
359.7 |
0.1 |
| C17 |
C18 |
H18 |
C19 |
180.0 |
179.7 |
| H18 |
C18 |
C19 |
F22 |
0.1 |
360.0 |
| C14 |
C19 |
F22 |
C18 |
180.1 |
179.8 |
| F22 |
C19 |
C18 |
H18 |
0.1 |
360.0 |
| O25 |
S23 |
N20 |
HN20 |
54.5 |
124.3 |
| O24 |
S23 |
O25 |
C26 |
233.2 |
228.5 |
| O25 |
S23 |
C26 |
H26 |
190.1 |
51.6 |
| O25 |
S23 |
C26 |
H26A |
309.2 |
171.6 |
| C26 |
S23 |
N20 |
HN20 |
167.9 |
240.4 |
| C27 |
C26 |
S23 |
H26 |
239.6 |
240.0 |
| C27 |
C26 |
S23 |
H26A |
120.4 |
120.0 |
| H26 |
C26 |
S23 |
H26A |
240.9 |
240.0 |
| O24 |
S23 |
N20 |
HN20 |
282.8 |
356.4 |
| O25 |
S23 |
O24 |
C26 |
125.2 |
131.5 |
| O24 |
S23 |
C26 |
H26 |
323.2 |
188.4 |
| O24 |
S23 |
C26 |
H26A |
82.4 |
308.4 |
| S23 |
C26 |
C27 |
H26 |
120.4 |
120.0 |
| S23 |
C26 |
C27 |
H26A |
239.6 |
240.0 |
| H26 |
C26 |
C27 |
H26A |
119.1 |
120.0 |
| S23 |
C26 |
H26 |
H26A |
118.7 |
120.1 |
| C27 |
C26 |
H26 |
H26A |
241.3 |
240.0 |
| S23 |
C26 |
H26A |
H26 |
241.3 |
240.0 |
| C27 |
C26 |
H26A |
H26 |
118.7 |
120.0 |
| C28 |
C27 |
C26 |
H26 |
76.6 |
60.0 |
| C28 |
C27 |
C26 |
H26A |
317.4 |
300.0 |
| H27 |
C27 |
C28 |
H27A |
119.2 |
120.0 |
| H27 |
C27 |
C26 |
H26 |
197.0 |
180.0 |
| H27 |
C27 |
C26 |
H26A |
77.9 |
60.0 |
| C28 |
C27 |
H27 |
H27A |
241.3 |
240.0 |
| H27A |
C27 |
C26 |
H26 |
316.2 |
300.0 |
| H27A |
C27 |
C26 |
H26A |
197.0 |
180.1 |
| C28 |
C27 |
H27A |
H27 |
118.7 |
120.0 |
| H28 |
C28 |
C27 |
H27 |
59.6 |
180.0 |
| H28 |
C28 |
C27 |
H27A |
300.4 |
60.0 |
| H28A |
C28 |
H28 |
H28B |
120.0 |
120.0 |
| H28A |
C28 |
C27 |
H27 |
179.6 |
300.0 |
| H28A |
C28 |
C27 |
H27A |
60.4 |
180.0 |
| H28 |
C28 |
H28A |
H28B |
240.0 |
240.0 |
| H28B |
C28 |
C27 |
H27 |
299.6 |
60.0 |
| H28B |
C28 |
C27 |
H27A |
180.4 |
300.0 |
| H28 |
C28 |
H28B |
H28A |
120.0 |
120.0 |