PDB Chemical Component RHO

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for RHO

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C C1 1.424 1.456
C C5 1.434 1.345
C N 1.516 1.397
C1 C2 1.412 1.362
C1 HC1 1.080 1.081
C2 C3 1.444 1.411
C2 OH1 1.397 1.356
C3 C4 1.439 1.511
C3 C8 1.450 1.366
C4 C5 1.421 1.513
C4 HC4 1.080 1.089
C5 HC5 1.080 1.080
N C6 1.386 1.464
N C7 1.388 1.465
C6 HC61 1.100 1.091
C6 HC62 1.100 1.089
C6 HC63 1.100 1.091
C7 HC71 1.100 1.090
C7 HC72 1.100 1.090
C7 HC73 1.100 1.089
OH1 C9 1.395 1.353
C8 C14 1.452 1.478
C8 C17 1.553 1.475
C9 C10 1.418 1.385
C9 C14 1.432 1.403
C10 C11 1.434 1.389
C10 H10C 1.080 1.080
C11 C12 1.437 1.392
C11 N1 1.407 1.394
C12 C13 1.417 1.378
C12 H12C 1.080 1.080
C13 C14 1.434 1.394
C13 H131 1.100  
C13 H132 1.100 1.080
N1 C15 1.393 1.465
N1 C16 1.392 1.466
C15 H151 1.100 1.090
C15 H152 1.100 1.090
C15 H153 1.100 1.090
C16 H161 1.101 1.090
C16 H162 1.099 1.090
C16 H163 1.100 1.090
C17 C18 1.449 1.410
C17 C22 1.434 1.395
C18 C19 1.427 1.394
C18 C23 1.530 1.474
C19 C20 1.438 1.386
C19 H19C 1.080 1.080
C20 C21 1.438 1.392
C20 N2 1.464 1.400
C21 C22 1.419 1.378
C21 H21C 1.080 1.080
C22 H22C 1.080 1.080
C23 OH2 1.252 1.348
C23 OH3 1.247 1.215
OH3 HO3 0.950  
N2 C24 1.339 1.345
N2 C27 1.342 1.345
C24 OH4 1.218 1.213
C24 C25 1.406 1.480
C25 C26 1.376 1.344
C25 H25C 1.080 1.080
C26 C27 1.411 1.480
C26 H26C 1.080 1.079
C27 OH5 1.218 1.214

Bond Angles for RHO

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C1 C C5 116.9 121.7
C1 C N 120.3 119.2
C C1 C2 121.4 122.8
C C1 HC1 119.3 118.5
C5 C N 122.8 119.2
C C5 C4 121.5 118.6
C C5 HC5 119.2 120.7
C N C6 123.3 120.0
C N C7 123.6 120.0
C2 C1 HC1 119.3 118.6
C1 C2 C3 122.9 120.2
C1 C2 OH1 114.8 119.2
C3 C2 OH1 122.2 120.7
C2 C3 C4 115.0 119.2
C2 C3 C8 116.6 120.5
C2 OH1 C9 120.7 122.0
C4 C3 C8 128.4 120.3
C3 C4 C5 122.2 117.6
C3 C4 HC4 118.9 107.8
C3 C8 C14 121.1 117.9
C3 C8 C17 115.5 121.0
C5 C4 HC4 118.9 107.8
C4 C5 HC5 119.3 120.7
C6 N C7 113.0 120.0
N C6 HC61 109.4 109.4
N C6 HC62 109.5 109.5
N C6 HC63 109.5 109.5
N C7 HC71 109.4 109.4
N C7 HC72 109.4 109.4
N C7 HC73 109.5 109.5
HC61 C6 HC62 109.5 109.5
HC61 C6 HC63 109.5 109.4
HC62 C6 HC63 109.4 109.5
HC71 C7 HC72 109.5 109.5
HC71 C7 HC73 109.5 109.5
HC72 C7 HC73 109.5 109.5
OH1 C9 C10 116.1 120.4
OH1 C9 C14 121.0 120.1
C14 C8 C17 121.5 121.0
C8 C14 C9 118.3 118.8
C8 C14 C13 126.5 120.9
C8 C17 C18 114.7 120.2
C8 C17 C22 126.7 120.2
C10 C9 C14 122.9 119.5
C9 C10 C11 121.4 119.9
C9 C10 H10C 119.3 120.1
C9 C14 C13 115.2 120.3
C11 C10 H10C 119.3 120.0
C10 C11 C12 116.4 120.4
C10 C11 N1 121.7 119.8
C12 C11 N1 121.9 119.8
C11 C12 C13 121.4 120.2
C11 C12 H12C 119.3 119.9
C11 N1 C15 124.4 120.0
C11 N1 C16 122.6 120.0
C13 C12 H12C 119.3 119.9
C12 C13 C14 122.7 119.7
C12 C13 H131 102.2  
C12 C13 H132 105.3 120.1
C14 C13 H131 102.1  
C14 C13 H132 105.2 120.2
H131 C13 H132 120.6  
C15 N1 C16 112.7 120.0
N1 C15 H151 109.4 109.5
N1 C15 H152 109.5 109.5
N1 C15 H153 109.5 109.4
N1 C16 H161 109.5 109.5
N1 C16 H162 109.5 109.4
N1 C16 H163 109.5 109.5
H151 C15 H152 109.5 109.5
H151 C15 H153 109.4 109.5
H152 C15 H153 109.5 109.5
H161 C16 H162 109.5 109.5
H161 C16 H163 109.4 109.5
H162 C16 H163 109.5 109.5
C18 C17 C22 118.5 119.7
C17 C18 C19 118.0 119.6
C17 C18 C23 128.6 120.2
C17 C22 C21 121.6 120.1
C17 C22 H22C 119.2 120.0
C19 C18 C23 113.5 120.2
C18 C19 C20 124.7 120.0
C18 C19 H19C 117.6 120.0
C18 C23 OH2 123.5 120.0
C18 C23 OH3 117.7 120.0
C20 C19 H19C 117.7 120.1
C19 C20 C21 115.5 120.3
C19 C20 N2 124.1 119.9
C21 C20 N2 120.4 119.8
C20 C21 C22 121.7 120.4
C20 C21 H21C 119.2 119.8
C20 N2 C24 121.9 125.2
C20 N2 C27 123.7 125.2
C22 C21 H21C 119.1 119.8
C21 C22 H22C 119.2 120.0
OH2 C23 OH3 118.7 120.0
C23 OH3 HO3 109.5  
C24 N2 C27 114.3 109.6
N2 C24 OH4 130.3 125.8
N2 C24 C25 104.7 108.4
N2 C27 C26 104.7 108.4
N2 C27 OH5 130.0 125.8
OH4 C24 C25 125.0 125.8
C24 C25 C26 108.4 106.8
C24 C25 H25C 125.8 126.6
C26 C25 H25C 125.8 126.6
C25 C26 C27 107.9 106.8
C25 C26 H26C 126.1 126.6
C27 C26 H26C 126.1 126.6
C26 C27 OH5 125.3 125.8

Torsion Angles for RHO

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C5 C C1 N 180.4 179.7
C1 C C5 C4 0.1 0.3
C1 C C5 HC5 180.1 180.2
C1 C N C6 0.5 179.7
C1 C N C7 180.9 359.8
C2 C1 C HC1 180.0 179.6
C C1 C2 C3 0.3 0.6
C C1 C2 OH1 181.3 180.3
C1 C C5 N 179.6 180.3
C5 C C1 C2 359.6 359.4
C5 C C1 HC1 179.5 179.8
C5 C N C6 180.0 360.0
C5 C N C7 0.5 180.0
C3 C4 C5 C 0.4 360.0
C C5 C4 HC4 180.4 238.0
C4 C5 C HC5 180.0 180.1
C1 C N C5 180.4 179.7
N C C1 C2 179.1 179.7
N C C1 HC1 359.1 0.0
N C C5 C4 180.5 180.0
N C C5 HC5 0.5 359.9
C6 N C C7 179.5 179.9
C N C6 HC61 185.0 180.0
C N C6 HC62 64.9 300.0
C N C6 HC63 305.0 60.1
C N C7 HC71 337.3 180.0
C N C7 HC72 217.3 300.0
C N C7 HC73 97.3 60.0
C2 C1 C C5 359.6 359.4
C2 C1 C N 179.1 179.7
C C1 C2 HC1 180.0 180.4
C3 C2 C1 OH1 179.0 180.3
C1 C2 C3 C4 0.2 359.7
C1 C2 C3 C8 180.7 179.7
C1 C2 OH1 C9 179.5 180.4
HC1 C1 C C5 179.5 179.8
HC1 C1 C N 359.1 0.0
C C1 HC1 C2 180.0 179.7
HC1 C1 C2 C3 180.3 180.3
HC1 C1 C2 OH1 1.3 360.0
C3 C2 C1 HC1 180.3 180.3
C1 C2 C3 OH1 181.0 179.7
C3 C2 OH1 C9 0.5 0.1
C4 C3 C2 C8 179.5 179.9
C2 C3 C4 C5 359.5 0.1
C2 C3 C4 HC4 179.5 122.1
C2 C3 C8 C14 359.2 360.0
C2 C3 C8 C17 163.3 180.0
OH1 C2 C1 HC1 1.3 360.0
C1 C2 OH1 C3 179.1 180.3
OH1 C2 C3 C4 179.2 179.9
OH1 C2 C3 C8 359.6 360.0
C2 OH1 C9 C10 181.2 180.0
C2 OH1 C9 C14 0.7 359.9
C C5 C4 C3 0.4 360.0
C4 C3 C2 OH1 179.2 179.9
C2 C3 C4 C8 180.5 180.1
C4 C3 C8 C14 179.7 180.0
C4 C3 C8 C17 343.8 0.0
C5 C4 C3 HC4 180.0 238.0
C3 C4 C5 HC5 180.4 180.0
C8 C3 C2 OH1 359.6 360.0
C2 C3 C8 C4 179.4 179.9
C8 C3 C4 C5 179.0 180.0
C8 C3 C4 HC4 358.9 302.0
C14 C8 C3 C17 195.9 180.0
C3 C8 C14 C9 1.9 360.0
C3 C8 C14 C13 180.8 180.0
C3 C8 C17 C18 114.8 254.7
C3 C8 C17 C22 291.9 75.0
C4 C5 C N 180.5 180.0
C C5 C4 HC5 180.0 179.9
C5 C4 C3 C8 179.0 180.0
C3 C4 C5 HC4 180.0 122.0
HC4 C4 C3 C8 358.9 302.0
C3 C4 HC4 C5 180.0 232.2
HC4 C4 C5 HC5 0.4 58.0
HC5 C5 C N 0.5 359.9
C C5 HC5 C4 180.0 180.1
HC5 C5 C4 HC4 0.4 58.0
C N C6 C7 180.4 180.1
C6 N C7 HC71 157.8 0.1
C6 N C7 HC72 37.8 120.0
C6 N C7 HC73 277.8 240.0
HC61 C6 N HC62 120.0 240.0
HC61 C6 N HC63 240.0 119.9
HC62 C6 N HC63 120.0 239.9
C N C7 C6 179.6 179.9
C7 N C6 HC61 4.5 359.9
C7 N C6 HC62 244.5 119.9
C7 N C6 HC63 124.5 240.0
HC71 C7 N HC72 120.0 240.1
HC71 C7 N HC73 240.0 120.1
HC72 C7 N HC73 120.0 240.0
HC61 C6 N C7 4.5 359.9
N C6 HC61 HC62 240.0 120.0
N C6 HC61 HC63 120.0 240.0
HC62 C6 HC61 HC63 240.0 120.0
HC62 C6 N C7 244.5 119.9
N C6 HC62 HC61 120.0 240.0
N C6 HC62 HC63 240.0 120.1
HC61 C6 HC62 HC63 120.0 240.0
HC63 C6 N C7 124.5 240.0
N C6 HC63 HC61 240.0 119.9
N C6 HC63 HC62 120.0 239.9
HC61 C6 HC63 HC62 240.0 120.0
N C7 HC71 HC72 240.0 119.9
N C7 HC71 HC73 120.0 239.9
HC72 C7 HC71 HC73 240.0 120.0
N C7 HC72 HC71 120.0 240.1
N C7 HC72 HC73 240.0 120.0
HC71 C7 HC72 HC73 120.0 239.9
N C7 HC73 HC71 240.0 120.0
N C7 HC73 HC72 120.0 240.0
HC71 C7 HC73 HC72 240.0 120.0
C8 C14 C9 OH1 358.2 0.1
C10 C9 OH1 C14 180.5 180.1
OH1 C9 C10 C11 179.7 180.0
OH1 C9 C10 H10C 359.7 360.0
OH1 C9 C14 C13 179.2 180.0
C3 C8 C14 C17 163.2 180.0
OH1 C9 C14 C8 358.2 0.1
C14 C8 C17 C18 278.9 74.7
C14 C8 C17 C22 96.0 255.0
C10 C9 C14 C8 177.6 180.0
C9 C14 C8 C13 181.1 180.0
C12 C13 C14 C8 182.1 180.0
C8 C14 C13 H131 295.3  
C8 C14 C13 H132 62.0 360.0
C3 C8 C17 C14 195.9 180.0
C17 C8 C14 C9 198.8 180.0
C17 C8 C14 C13 17.6 0.1
C18 C17 C8 C22 182.9 179.7
C8 C17 C18 C19 176.1 179.8
C8 C17 C18 C23 357.8 0.2
C8 C17 C22 C21 184.1 180.0
C8 C17 C22 H22C 4.1 359.9
OH1 C9 C10 C14 179.4 179.9
C8 C14 C9 C10 177.6 180.0
C10 C9 C14 C13 358.6 359.9
C11 C10 C9 H10C 180.0 180.0
C9 C10 C11 C12 1.3 360.0
C9 C10 C11 N1 182.0 180.0
OH1 C9 C14 C10 180.6 180.1
C9 C14 C8 C17 198.8 180.0
C8 C14 C9 C13 179.0 180.0
C14 C9 C10 C11 0.3 0.1
C14 C9 C10 H10C 180.3 180.1
C12 C13 C14 C9 1.0 0.0
C9 C14 C13 H131 114.2  
C9 C14 C13 H132 240.9 180.0
C11 C10 C9 C14 0.3 0.1
C9 C10 C11 H10C 180.0 180.0
C12 C11 C10 N1 179.3 180.0
C10 C11 C12 C13 358.3 359.9
C10 C11 C12 H12C 178.3 180.0
C10 C11 N1 C15 7.6 174.2
C10 C11 N1 C16 180.9 354.2
H10C C10 C9 C14 180.3 180.1
C9 C10 H10C C11 180.0 180.0
H10C C10 C11 C12 181.3 180.0
H10C C10 C11 N1 2.0 360.0
C12 C11 C10 H10C 181.3 180.0
C10 C11 C12 N1 180.7 180.0
C12 C11 N1 C15 188.3 354.2
C12 C11 N1 C16 1.7 174.2
C13 C12 C11 H12C 180.0 179.9
C11 C12 C13 C14 0.6 0.1
C11 C12 C13 H131 247.4  
C11 C12 C13 H132 120.6 180.0
N1 C11 C10 H10C 2.0 360.0
C10 C11 N1 C12 179.2 180.0
N1 C11 C12 C13 177.6 179.9
N1 C11 C12 H12C 357.6 0.0
C15 N1 C11 C16 186.7 180.0
C11 N1 C15 H151 1.4 90.0
C11 N1 C15 H152 241.4 210.0
C11 N1 C15 H153 121.4 330.0
C11 N1 C16 H161 319.5 5.1
C11 N1 C16 H162 199.5 125.1
C11 N1 C16 H163 79.5 245.0
C8 C14 C13 C12 182.1 180.0
C9 C14 C13 C12 1.0 0.0
C13 C12 C11 N1 177.6 179.9
C11 C12 C13 H12C 180.0 180.1
C14 C13 C12 H131 113.2  
C14 C13 C12 H132 240.0 180.0
H131 C13 C12 H132 126.8  
H12C C12 C11 N1 357.6 0.0
C11 C12 H12C C13 180.0 179.9
H12C C12 C13 C14 180.6 180.0
H12C C12 C13 H131 67.4  
H12C C12 C13 H132 300.6 360.0
C13 C14 C8 C17 17.6 0.1
C8 C14 C13 C9 181.1 180.0
C14 C13 C12 H12C 180.6 180.0
C12 C13 C14 H131 246.8  
C12 C13 C14 H132 120.0 180.0
H131 C13 C14 H132 233.3  
H131 C13 C12 H12C 67.4  
C12 C13 H131 C14 127.7  
C12 C13 H131 H132 243.8  
C14 C13 H131 H132 116.1  
H132 C13 C12 H12C 300.6 360.0
C12 C13 H132 C14 229.0 180.0
C12 C13 H132 H131 114.6  
C14 C13 H132 H131 245.5  
C11 N1 C15 C16 173.9 180.0
C15 N1 C16 H161 133.5 185.0
C15 N1 C16 H162 13.5 305.0
C15 N1 C16 H163 253.5 65.0
H151 C15 N1 H152 120.0 240.0
H151 C15 N1 H153 240.0 120.0
H152 C15 N1 H153 120.0 240.1
C11 N1 C16 C15 186.0 180.0
C16 N1 C15 H151 187.5 270.0
C16 N1 C15 H152 67.5 30.1
C16 N1 C15 H153 307.5 150.0
H161 C16 N1 H162 120.0 240.0
H161 C16 N1 H163 240.0 120.1
H162 C16 N1 H163 120.0 240.0
H151 C15 N1 C16 187.5 270.0
N1 C15 H151 H152 240.0 120.0
N1 C15 H151 H153 120.0 240.0
H152 C15 H151 H153 240.0 120.0
H152 C15 N1 C16 67.5 30.1
N1 C15 H152 H151 120.0 240.0
N1 C15 H152 H153 240.0 119.9
H151 C15 H152 H153 120.0 240.0
H153 C15 N1 C16 307.5 150.0
N1 C15 H153 H151 240.0 120.0
N1 C15 H153 H152 120.0 240.0
H151 C15 H153 H152 240.0 120.0
N1 C16 H161 H162 240.0 120.0
N1 C16 H161 H163 120.0 240.0
H162 C16 H161 H163 240.0 120.0
N1 C16 H162 H161 120.0 240.0
N1 C16 H162 H163 240.0 120.0
H161 C16 H162 H163 120.0 240.0
N1 C16 H163 H161 240.0 120.0
N1 C16 H163 H162 120.0 240.1
H161 C16 H163 H162 240.0 120.0
C8 C17 C18 C22 177.4 180.3
C18 C17 C22 C21 1.1 0.3
C18 C17 C22 H22C 181.1 180.2
C19 C18 C17 C23 178.2 179.5
C17 C18 C19 C20 0.5 0.5
C17 C18 C19 H19C 180.5 180.3
C17 C18 C23 OH2 119.5 179.5
C17 C18 C23 OH3 302.2 359.5
C8 C17 C22 C18 183.0 179.7
C22 C17 C18 C19 358.7 359.4
C22 C17 C18 C23 180.5 179.9
C20 C21 C22 C17 360.0 359.9
C17 C22 C21 H21C 180.0 180.0
C21 C22 C17 H22C 180.0 180.1
C19 C18 C17 C22 358.7 359.4
C17 C18 C19 C23 181.5 180.5
C19 C18 C23 OH2 301.2 360.0
C19 C18 C23 OH3 123.9 180.0
C20 C19 C18 H19C 180.0 180.2
C18 C19 C20 C21 0.5 359.7
C18 C19 C20 N2 180.9 179.8
C23 C18 C17 C22 180.5 179.9
C17 C18 C23 C19 178.3 179.5
C23 C18 C19 C20 179.0 180.0
C23 C18 C19 H19C 359.0 359.8
OH2 C23 C18 OH3 177.3 179.9
C18 C23 OH3 HO3 177.4  
C20 C19 C18 C23 179.0 180.0
C18 C19 C20 H19C 180.0 179.8
C21 C20 C19 N2 179.6 179.9
C19 C20 C21 C22 359.2 0.1
C19 C20 C21 H21C 179.2 180.0
C19 C20 N2 C24 330.9 220.0
C19 C20 N2 C27 150.5 39.6
H19C C19 C18 C23 359.0 359.8
C18 C19 H19C C20 180.0 180.2
H19C C19 C20 C21 180.5 179.9
H19C C19 C20 N2 0.9 0.0
C17 C22 C21 C20 360.0 359.9
C21 C20 C19 H19C 180.5 179.9
C19 C20 C21 N2 180.4 180.1
C21 C20 N2 C24 151.3 40.0
C21 C20 N2 C27 330.9 219.7
C22 C21 C20 H21C 180.0 180.1
C20 C21 C22 H22C 180.0 180.0
N2 C20 C19 H19C 0.9 0.0
C19 C20 N2 C21 179.6 179.9
N2 C20 C21 C22 178.9 180.0
N2 C20 C21 H21C 358.9 359.9
C24 N2 C20 C27 180.5 180.4
C20 N2 C24 OH4 359.8 360.0
C20 N2 C24 C25 179.7 179.9
C20 N2 C27 C26 180.3 179.9
C20 N2 C27 OH5 0.3 0.4
C17 C22 C21 H22C 180.0 179.9
C22 C21 C20 N2 178.9 180.0
C20 C21 C22 H21C 180.0 179.9
H21C C21 C20 N2 358.9 359.9
C20 C21 H21C C22 180.0 180.1
H21C C21 C22 H22C 360.0 0.1
C17 C22 H22C C21 180.0 180.1
H22C C22 C21 H21C 360.0 0.1
C18 C23 OH2 OH3 182.7 180.1
OH2 C23 OH3 HO3 360.0  
C18 C23 OH3 OH2 177.5 179.9
C20 N2 C24 C27 179.6 179.7
C24 N2 C27 C26 359.8 359.6
C24 N2 C27 OH5 179.9 180.0
OH4 C24 N2 C25 180.1 180.0
N2 C24 C25 C26 359.9 0.0
N2 C24 C25 H25C 179.9 180.0
C20 N2 C27 C24 180.4 180.3
C27 N2 C24 OH4 180.3 180.3
C27 N2 C24 C25 0.2 0.3
C25 C26 C27 N2 0.1 0.4
N2 C27 C26 H26C 180.1 180.2
C26 C27 N2 OH5 179.9 179.5
OH4 C24 N2 C27 180.3 180.3
N2 C24 OH4 C25 179.9 179.9
OH4 C24 C25 C26 179.8 180.0
OH4 C24 C25 H25C 359.8 360.0
C25 C24 N2 C27 0.2 0.3
N2 C24 C25 OH4 180.1 180.0
C26 C25 C24 H25C 180.0 180.0
C24 C25 C26 C27 360.0 359.7
C24 C25 C26 H26C 180.0 180.0
N2 C27 C26 C25 0.1 0.4
C24 C25 C26 H25C 180.0 180.0
C27 C26 C25 H26C 180.0 179.7
C25 C26 C27 OH5 180.1 180.0
C24 C25 H25C C26 180.0 180.0
H25C C25 C26 C27 180.0 179.7
H25C C25 C26 H26C 360.0 0.0
N2 C27 C26 OH5 180.1 180.5
C27 C26 C25 H25C 180.0 179.7
C25 C26 C27 H26C 180.0 180.3
H26C C26 C25 H25C 360.0 0.0
C25 C26 H26C C27 180.0 179.7
H26C C26 C27 OH5 0.1 359.7
N2 C27 OH5 C26 179.9 179.5
OH5 C27 C26 H26C 0.1 359.7