PDB Chemical Component RGP
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for RGP
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| PA |
OA1 |
1.519 |
1.480 |
| PA |
OA2 |
1.528 |
1.610 |
| PA |
OA3 |
1.519 |
1.610 |
| PA |
OE2 |
1.664 |
1.610 |
| OA2 |
HA2 |
0.950 |
0.967 |
| OA3 |
HA3 |
0.950 |
0.967 |
| OE2 |
CD |
1.373 |
1.342 |
| CD |
OE1 |
1.231 |
1.208 |
| CD |
CG |
1.540 |
1.507 |
| CG |
CB |
1.537 |
1.531 |
| CG |
HG1 |
1.100 |
1.089 |
| CG |
HG2 |
1.101 |
1.090 |
| CB |
CA |
1.532 |
1.530 |
| CB |
HB1 |
1.100 |
1.090 |
| CB |
HB2 |
1.100 |
1.090 |
| CA |
C |
1.541 |
1.507 |
| CA |
N |
1.478 |
1.469 |
| CA |
HA |
1.100 |
1.089 |
| C |
OXT |
1.447 |
1.208 |
| C |
O |
1.252 |
1.342 |
| O |
HXT |
0.950 |
0.968 |
| N |
H |
1.000 |
1.009 |
| N |
H2 |
1.000 |
1.009 |
Bond Angles for RGP
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| OA1 |
PA |
OA2 |
108.7 |
109.5 |
| OA1 |
PA |
OA3 |
110.4 |
109.5 |
| OA1 |
PA |
OE2 |
104.3 |
109.5 |
| OA2 |
PA |
OA3 |
112.8 |
109.5 |
| OA2 |
PA |
OE2 |
111.4 |
109.5 |
| PA |
OA2 |
HA2 |
109.5 |
106.8 |
| OA3 |
PA |
OE2 |
109.1 |
109.4 |
| PA |
OA3 |
HA3 |
109.5 |
106.8 |
| PA |
OE2 |
CD |
123.5 |
120.0 |
| OE2 |
CD |
OE1 |
127.8 |
120.0 |
| OE2 |
CD |
CG |
113.2 |
120.0 |
| OE1 |
CD |
CG |
119.0 |
120.0 |
| CD |
CG |
CB |
113.6 |
109.5 |
| CD |
CG |
HG1 |
107.2 |
109.5 |
| CD |
CG |
HG2 |
108.1 |
109.5 |
| CB |
CG |
HG1 |
107.1 |
109.4 |
| CB |
CG |
HG2 |
108.1 |
109.4 |
| CG |
CB |
CA |
118.9 |
109.5 |
| CG |
CB |
HB1 |
104.3 |
109.4 |
| CG |
CB |
HB2 |
106.4 |
109.4 |
| HG1 |
CG |
HG2 |
112.8 |
109.5 |
| CA |
CB |
HB1 |
104.2 |
109.5 |
| CA |
CB |
HB2 |
106.4 |
109.5 |
| CB |
CA |
C |
114.0 |
109.4 |
| CB |
CA |
N |
107.5 |
109.5 |
| CB |
CA |
HA |
108.0 |
109.5 |
| HB1 |
CB |
HB2 |
117.2 |
109.5 |
| C |
CA |
N |
110.2 |
109.5 |
| C |
CA |
HA |
105.2 |
109.5 |
| CA |
C |
OXT |
112.3 |
120.0 |
| CA |
C |
O |
120.5 |
120.0 |
| N |
CA |
HA |
112.0 |
109.5 |
| CA |
N |
H |
109.5 |
106.7 |
| CA |
N |
H2 |
109.5 |
106.7 |
| OXT |
C |
O |
127.2 |
120.0 |
| C |
O |
HXT |
109.5 |
120.0 |
| H |
N |
H2 |
109.4 |
106.7 |
Torsion Angles for RGP
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| OA2 |
PA |
OA1 |
OA3 |
124.2 |
120.0 |
| OA2 |
PA |
OA1 |
OE2 |
241.1 |
240.0 |
| OA1 |
PA |
OA2 |
HA2 |
124.0 |
179.9 |
| OA3 |
PA |
OA1 |
OE2 |
117.0 |
120.0 |
| OA1 |
PA |
OA3 |
HA3 |
55.8 |
60.1 |
| OA1 |
PA |
OE2 |
CD |
183.2 |
305.0 |
| OA1 |
PA |
OA2 |
OA3 |
237.3 |
240.0 |
| OA1 |
PA |
OA2 |
OE2 |
114.3 |
120.0 |
| OA3 |
PA |
OA2 |
OE2 |
237.0 |
240.0 |
| OA2 |
PA |
OA3 |
HA3 |
294.0 |
300.1 |
| OA2 |
PA |
OE2 |
CD |
300.2 |
65.1 |
| OA1 |
PA |
OA3 |
OA2 |
121.8 |
120.0 |
| OA1 |
PA |
OA3 |
OE2 |
246.0 |
240.0 |
| OA2 |
PA |
OA3 |
OE2 |
124.3 |
120.0 |
| OA3 |
PA |
OA2 |
HA2 |
246.7 |
300.0 |
| OA3 |
PA |
OE2 |
CD |
65.3 |
185.1 |
| OA1 |
PA |
OE2 |
OA2 |
243.0 |
240.0 |
| OA1 |
PA |
OE2 |
OA3 |
117.9 |
120.0 |
| OA2 |
PA |
OE2 |
OA3 |
234.9 |
240.0 |
| OE2 |
PA |
OA2 |
HA2 |
9.7 |
59.9 |
| OE2 |
PA |
OA3 |
HA3 |
169.8 |
180.1 |
| PA |
OE2 |
CD |
OE1 |
282.2 |
359.9 |
| PA |
OE2 |
CD |
CG |
103.0 |
180.0 |
| HA2 |
OA2 |
PA |
OA3 |
246.7 |
300.0 |
| HA2 |
OA2 |
PA |
OE2 |
9.7 |
59.9 |
| HA3 |
OA3 |
PA |
OE2 |
169.8 |
180.1 |
| OE1 |
CD |
OE2 |
CG |
179.1 |
179.9 |
| OE2 |
CD |
CG |
CB |
228.7 |
180.0 |
| OE2 |
CD |
CG |
HG1 |
110.5 |
60.0 |
| OE2 |
CD |
CG |
HG2 |
348.7 |
299.9 |
| OE2 |
CD |
OE1 |
CG |
180.9 |
180.1 |
| OE1 |
CD |
CG |
CB |
49.5 |
0.0 |
| OE1 |
CD |
CG |
HG1 |
291.3 |
240.1 |
| OE1 |
CD |
CG |
HG2 |
169.5 |
120.0 |
| OE2 |
CD |
CG |
OE1 |
179.2 |
179.9 |
| CB |
CG |
CD |
HG1 |
118.2 |
120.0 |
| CB |
CG |
CD |
HG2 |
240.0 |
240.0 |
| CD |
CG |
CB |
CA |
135.1 |
179.9 |
| CD |
CG |
CB |
HB1 |
19.6 |
60.0 |
| CD |
CG |
CB |
HB2 |
255.1 |
300.0 |
| HG1 |
CG |
CD |
HG2 |
121.8 |
120.1 |
| CD |
CG |
CB |
HG1 |
241.8 |
240.0 |
| CD |
CG |
CB |
HG2 |
120.0 |
120.0 |
| HG1 |
CG |
CB |
HG2 |
238.2 |
240.0 |
| CA |
CB |
CG |
HB1 |
115.5 |
120.0 |
| CA |
CB |
CG |
HB2 |
240.0 |
240.0 |
| CG |
CB |
CA |
C |
298.7 |
185.0 |
| CG |
CB |
CA |
N |
176.3 |
65.0 |
| CG |
CB |
CA |
HA |
55.2 |
305.0 |
| HB1 |
CB |
CG |
HB2 |
124.5 |
120.0 |
| CD |
CG |
HG1 |
CB |
122.3 |
120.0 |
| CD |
CG |
HG1 |
HG2 |
241.2 |
239.9 |
| CB |
CG |
HG1 |
HG2 |
118.9 |
119.9 |
| HG1 |
CG |
CB |
CA |
253.2 |
300.0 |
| HG1 |
CG |
CB |
HB1 |
137.8 |
180.0 |
| HG1 |
CG |
CB |
HB2 |
13.2 |
60.0 |
| CD |
CG |
HG2 |
CB |
236.6 |
240.0 |
| CD |
CG |
HG2 |
HG1 |
118.3 |
120.1 |
| CB |
CG |
HG2 |
HG1 |
241.7 |
240.1 |
| HG2 |
CG |
CB |
CA |
15.1 |
60.0 |
| HG2 |
CG |
CB |
HB1 |
259.6 |
300.0 |
| HG2 |
CG |
CB |
HB2 |
135.1 |
180.0 |
| CA |
CB |
CG |
HG1 |
253.2 |
300.0 |
| CA |
CB |
CG |
HG2 |
15.1 |
60.0 |
| CG |
CB |
CA |
HB1 |
244.5 |
240.0 |
| CG |
CB |
CA |
HB2 |
120.0 |
120.0 |
| HB1 |
CB |
CA |
HB2 |
235.5 |
240.0 |
| C |
CA |
CB |
N |
122.4 |
120.0 |
| C |
CA |
CB |
HA |
243.5 |
240.0 |
| CB |
CA |
C |
OXT |
115.8 |
260.0 |
| CB |
CA |
C |
O |
295.6 |
80.1 |
| N |
CA |
CB |
HA |
121.0 |
120.0 |
| CB |
CA |
N |
H |
11.9 |
306.2 |
| CB |
CA |
N |
H2 |
251.9 |
60.0 |
| HB1 |
CB |
CG |
HG1 |
137.8 |
180.0 |
| HB1 |
CB |
CG |
HG2 |
259.6 |
300.0 |
| CG |
CB |
HB1 |
CA |
125.4 |
120.0 |
| CG |
CB |
HB1 |
HB2 |
242.7 |
240.1 |
| CA |
CB |
HB1 |
HB2 |
117.3 |
120.1 |
| HB1 |
CB |
CA |
C |
54.2 |
305.0 |
| HB1 |
CB |
CA |
N |
291.8 |
185.0 |
| HB1 |
CB |
CA |
HA |
170.7 |
65.0 |
| HB2 |
CB |
CG |
HG1 |
13.2 |
60.0 |
| HB2 |
CB |
CG |
HG2 |
135.1 |
180.0 |
| CG |
CB |
HB2 |
CA |
232.2 |
240.0 |
| CG |
CB |
HB2 |
HB1 |
116.1 |
120.0 |
| CA |
CB |
HB2 |
HB1 |
243.9 |
240.0 |
| HB2 |
CB |
CA |
C |
178.7 |
65.0 |
| HB2 |
CB |
CA |
N |
56.3 |
305.0 |
| HB2 |
CB |
CA |
HA |
295.2 |
185.0 |
| C |
CA |
CB |
HB1 |
54.2 |
305.0 |
| C |
CA |
CB |
HB2 |
178.7 |
65.0 |
| CB |
CA |
C |
N |
239.1 |
240.0 |
| CB |
CA |
C |
HA |
118.2 |
120.0 |
| N |
CA |
C |
HA |
239.1 |
240.0 |
| C |
CA |
N |
H |
247.2 |
186.3 |
| C |
CA |
N |
H2 |
127.2 |
300.0 |
| OXT |
C |
CA |
O |
180.2 |
179.9 |
| CA |
C |
O |
HXT |
180.3 |
179.9 |
| N |
CA |
CB |
HB1 |
291.8 |
185.0 |
| N |
CA |
CB |
HB2 |
56.3 |
305.0 |
| CB |
CA |
N |
C |
124.7 |
120.0 |
| CB |
CA |
N |
HA |
241.5 |
240.0 |
| C |
CA |
N |
HA |
116.8 |
120.0 |
| N |
CA |
C |
OXT |
236.8 |
19.9 |
| N |
CA |
C |
O |
56.5 |
200.0 |
| H |
N |
CA |
H2 |
120.0 |
246.2 |
| HA |
CA |
CB |
HB1 |
170.7 |
65.0 |
| HA |
CA |
CB |
HB2 |
295.2 |
185.0 |
| CB |
CA |
HA |
C |
237.9 |
240.0 |
| CB |
CA |
HA |
N |
118.2 |
120.0 |
| C |
CA |
HA |
N |
240.3 |
240.0 |
| HA |
CA |
C |
OXT |
357.7 |
139.9 |
| HA |
CA |
C |
O |
177.4 |
320.0 |
| HA |
CA |
N |
H |
130.4 |
66.2 |
| HA |
CA |
N |
H2 |
10.4 |
180.0 |
| OXT |
C |
CA |
N |
236.8 |
19.9 |
| OXT |
C |
CA |
HA |
357.7 |
139.9 |
| CA |
C |
OXT |
O |
179.7 |
180.1 |
| OXT |
C |
O |
HXT |
360.0 |
0.0 |
| O |
C |
CA |
N |
56.5 |
200.0 |
| O |
C |
CA |
HA |
177.4 |
320.0 |
| CA |
C |
O |
OXT |
180.3 |
179.9 |
| H |
N |
CA |
HA |
130.4 |
66.2 |
| CA |
N |
H |
H2 |
239.9 |
113.7 |
| H2 |
N |
CA |
HA |
10.4 |
180.0 |
| CA |
N |
H2 |
H |
120.0 |
246.2 |