PDB Chemical Component RG1

Ideal Model

Chemical Description

Name Rhodopin b-D-glucoside
Synonyms (3E)-3,4-didehydro-1',2'-dihydro-psi,psi-caroten-1'-yl beta-D-glucopyranoside
Formula C46 H66 O6
Formal charge 0
Molecular weight 715.013 g/mol
Component type D-saccharide

Chemical features

Atom count 118
Chiral atom count 5
Chiral atoms C1' C2' C3' C4' C5'
Bond count 118
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) (3E)-3,4-didehydro-1',2'-dihydro-psi,psi-caroten-1'-yl beta-D-glucopyranoside
Systematic name (OpenEye OEToolkits) (2~{R},3~{S},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-6-[(6~{E},8~{E},10~{E},12~{E},14~{E},16~{E},18~{E},20~{E},22~{E},24~{E},26~{E},28~{E})-2,6,10,14,19,23,27,31-octamethyldotriaconta-6,8,10,12,14,16,18,20,22,24,26,28,30-tridecaen-2-yl]oxy-oxane-3,4,5-triol

Chemical Descriptors

Stereo SMILES (CACTVS) CC(C)=C\C=C\C(C)=C\C=C\C(C)=C\C=C\C(C)=C\C=C\C=C(C)\C=C\C=C(C)\C=C\C=C(C)\CCCC(C)(C)O[C@@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@H]1O
SMILES (CACTVS) CC(C)=CC=CC(C)=CC=CC(C)=CC=CC(C)=CC=CC=C(C)C=CC=C(C)C=CC=C(C)CCCC(C)(C)O[CH]1O[CH](CO)[CH](O)[CH](O)[CH]1O
Stereo SMILES (OpenEye) CC(=C/C=C/C(=C/C=C/C(=C/C=C/C(=C/C=C/C=C(\C)/C=C/C=C(\C)/C=C/C=C(\C)/CCCC(C)(C)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O)O)O)/C)/C)/C)C
InChI descriptor InChI=1S/C46H66O6/c1-34(2)19-13-22-37(5)25-16-28-38(6)26-14-23-35(3)20-11-12-21-36(4)24-15-27-39(7)29-17-30-40(8)31-18-32-46(9,10)52-45-44(50)43(49)42(48)41(33-47)51-45/h11-17,19-30,41-45,47-50H,18,31-33H2,1-10H3/b12-11+,22-13+,23-14+,24-15+,28-16+,29-17+,35-20+,36-21+,37-25+,38-26+,39-27+,40-30+/t41-,42-,43+,44-,45+/m1/s1
InChIKey descriptor ISHBHDBCVQRMDY-GZIKAPSJSA-N

Status Information

Last modified 2020-06-17
Created 1999-07-08
Release status REL
Model PDB code 2FKW
Processing site RCSB