PDB Chemical Component RG1

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for RG1

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
CM9 C30 1.525 1.508
C30 CM0 1.510 1.507
C30 C29 1.342 1.336
C29 C28 1.480 1.417
C28 C27 1.278 1.359
C27 C26 1.459 1.405
C26 CM8 1.513 1.507
C26 C25 1.329 1.366
C25 C24 1.459 1.401
C24 C23 1.333 1.378
C23 C22 1.475 1.399
C22 C21 1.336 1.379
C22 CM7 1.524 1.507
C21 C20 1.459 1.398
C20 C19 1.368 1.381
C19 C18 1.489 1.397
C18 C17 1.359 1.381
C18 CM6 1.506 1.507
C17 C16 1.442 1.397
C16 C15 1.360 1.380
C15 C14 1.454 1.398
CM5 C13 1.498 1.507
C14 C13 1.356 1.380
C13 C12 1.480 1.398
C12 C11 1.336 1.378
C11 C10 1.514 1.400
C10 C9 1.356 1.366
CM4 C9 1.505 1.507
C9 C8 1.506 1.405
C8 C7 1.345 1.360
C7 C6 1.512 1.417
C6 C5 1.371 1.337
CM3 C5 1.503 1.507
C5 C4 1.536 1.508
C4 C3 1.542 1.530
C3 C2 1.571 1.530
C2 C1 1.568 1.530
CM2 C1 1.532 1.530
CM1 C1 1.546 1.529
C1 O1' 1.475 1.429
O1' C1' 1.482 1.429
C1' O5' 1.474 1.429
C1' C2' 1.560 1.531
O5' C5' 1.457 1.429
O2' C2' 1.414 1.429
O6' C6' 1.421 1.430
C2' C3' 1.526 1.532
C5' C6' 1.513 1.530
C5' C4' 1.540 1.531
C3' C4' 1.531 1.532
C3' O3' 1.469 1.430
C4' O4' 1.444 1.429
C1' H1 1.100 1.090
C2' H2 1.100 1.090
C3' H3 1.100 1.090
C4' H4 1.100 1.090
C5' H5 1.100 1.090
C6' H6 1.100 1.090
C6' H7 1.100 1.090
O2' H8 0.950 0.967
O3' H9 0.950 0.967
O4' H10 0.950 0.967
O6' H11 0.950 0.967
CM1 H12 1.100 1.090
CM1 H13 1.100 1.091
CM1 H14 1.100 1.090
CM2 H15 1.100 1.090
CM2 H16 1.100 1.090
CM2 H17 1.100 1.090
C2 H18 1.100 1.090
C2 H19 1.100 1.091
C3 H20 1.100 1.091
C3 H21 1.100 1.090
C4 H22 1.100 1.090
C4 H23 1.100 1.090
CM3 H24 1.100 1.090
CM3 H25 1.100 1.090
CM3 H26 1.100 1.090
C6 H27 1.080 1.080
C7 H28 1.081 1.080
C8 H29 1.079 1.080
CM4 H30 1.100 1.090
CM4 H31 1.100 1.090
CM4 H32 1.100 1.090
C10 H33 1.080 1.081
C11 H34 1.080 1.080
C12 H35 1.080 1.081
CM5 H36 1.100 1.090
CM5 H37 1.100 1.089
CM5 H38 1.100 1.090
C14 H39 1.081 1.080
C15 H40 1.080 1.080
C16 H41 1.080 1.081
C17 H42 1.080 1.080
CM6 H43 1.100 1.089
CM6 H44 1.100 1.090
CM6 H45 1.100 1.091
C19 H46 1.080 1.081
C20 H47 1.080 1.080
C21 H48 1.080 1.080
CM7 H49 1.100 1.090
CM7 H50 1.100 1.090
CM7 H51 1.100 1.090
C23 H52 1.080 1.080
C24 H53 1.080 1.080
C25 H54 1.080 1.081
CM8 H55 1.100 1.090
CM8 H56 1.100 1.090
CM8 H57 1.099 1.089
C27 H58 1.080 1.080
C28 H59 1.080 1.081
C29 H60 1.080 1.080
CM9 H61 1.100 1.091
CM9 H62 1.100 1.090
CM9 H63 1.100 1.089
CM0 H64 1.100 1.091
CM0 H65 1.100 1.090
CM0 H66 1.100 1.090

Bond Angles for RG1

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
CM9 C30 CM0 121.0 120.0
C30 CM0 H64 109.5 109.5
C30 CM0 H65 109.4 109.5
C30 CM0 H66 109.5 109.5
C30 C29 H60 118.8 120.0
C29 C28 H59 121.9 120.0
C28 C27 H58 120.3 120.0
C26 CM8 H55 109.5 109.4
C26 CM8 H56 109.4 109.4
C26 CM8 H57 109.5 109.5
C26 C25 H54 118.1 120.0
C25 C24 H53 121.9 120.0
C24 C23 H52 117.8 120.0
C22 C21 H48 118.2 120.0
C22 CM7 H49 109.5 109.5
C22 CM7 H50 109.4 109.5
C22 CM7 H51 109.5 109.5
C21 C20 H47 120.6 120.0
C20 C19 H46 119.2 119.9
C18 C17 H42 120.2 119.9
C18 CM6 H43 109.5 109.5
C18 CM6 H44 109.5 109.5
C18 CM6 H45 109.5 109.4
C17 C16 H41 118.8 120.0
C16 C15 H40 121.3 120.0
C15 C14 H39 118.5 120.0
C13 C12 H35 117.2 120.0
C12 C11 H34 122.1 119.9
C11 C10 H33 117.7 120.0
C9 C8 H29 118.3 120.1
C8 C7 H28 120.1 120.0
C7 C6 H27 119.4 120.1
C5 C4 H22 108.2 109.4
C5 C4 H23 108.2 109.5
C4 C3 H20 109.2 109.5
C4 C3 H21 109.2 109.5
C3 C2 H18 108.0 109.4
C3 C2 H19 108.0 109.5
O1' C1' O5' 109.4 109.5
O1' C1' H1 109.7 109.5
C2' C1' O5' 111.1 109.5
C1' O5' C5' 115.1 114.1
O5' C1' H1 109.8 109.5
C1' C2' C3' 114.8 109.1
C2' C1' H1 108.6 109.4
C1' C2' H2 107.6 109.5
O5' C5' H5 109.3 109.4
O2' C2' H2 109.5 109.6
O6' C6' H6 109.9 109.4
O6' C6' H7 109.9 109.4
C2' C3' C4' 110.7 109.0
C2' C3' O3' 108.6 109.5
C3' C2' H2 108.1 109.5
C2' C3' H3 108.5 109.5
C6' C5' H5 108.5 109.5
C5' C6' H6 109.8 109.5
C5' C6' H7 109.8 109.5
C5' C4' O4' 111.0 109.5
C5' C4' H4 108.4 109.6
C4' C3' O3' 111.3 109.5
C3' C4' O4' 110.0 109.5
C4' C3' H3 108.5 109.6
C3' C4' H4 108.5 109.5
O3' C3' H3 109.3 109.6
C3' O3' H9 109.5 114.0
O4' C4' H4 109.7 109.6
C4' O4' H10 109.5 114.0
H6 C6' H7 109.5 109.5
H12 CM1 H13 109.5 109.4
H12 CM1 H14 109.5 109.5
H13 CM1 H14 109.5 109.4
H15 CM2 H16 109.5 109.4
H15 CM2 H17 109.5 109.5
H16 CM2 H17 109.5 109.4
H18 C2 H19 109.5 109.5
H20 C3 H21 109.5 109.5
H22 C4 H23 109.5 109.4
H24 CM3 H25 109.4 109.5
H24 CM3 H26 109.5 109.4
H25 CM3 H26 109.5 109.5
H30 CM4 H31 109.5 109.4
H30 CM4 H32 109.4 109.5
H31 CM4 H32 109.5 109.5
H36 CM5 H37 109.4 109.5
H36 CM5 H38 109.5 109.5
H37 CM5 H38 109.5 109.5
H43 CM6 H44 109.5 109.5
H43 CM6 H45 109.4 109.5
H44 CM6 H45 109.5 109.4
H49 CM7 H50 109.5 109.5
H49 CM7 H51 109.5 109.4
H50 CM7 H51 109.5 109.5
H55 CM8 H56 109.4 109.5
H55 CM8 H57 109.5 109.5
H56 CM8 H57 109.5 109.5
H61 CM9 H62 109.4 109.5
H61 CM9 H63 109.5 109.5
H62 CM9 H63 109.5 109.5
H64 CM0 H65 109.5 109.5
H64 CM0 H66 109.4 109.5
H65 CM0 H66 109.5 109.5

Torsion Angles for RG1

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
CM9 C30 CM0 H64 180.0 185.6
CM9 C30 CM0 H65 300.0 305.6
CM9 C30 CM0 H66 60.0 65.6
CM9 C30 C29 H60 0.2 5.9
CM0 C30 C29 H60 179.1 185.9
H64 CM0 C30 H65 240.0 240.0
H64 CM0 C30 H66 120.0 120.0
H65 CM0 C30 H66 240.0 240.0
C30 C29 C28 H59 349.7 357.0
C29 C28 C27 H58 10.3 0.0
C27 C26 CM8 H55 180.0 270.0
C27 C26 CM8 H56 300.0 30.0
C27 C26 CM8 H57 60.0 150.0
C27 C26 C25 H54 6.2 0.0
CM8 C26 C25 H54 179.7 180.0
H55 CM8 C26 H56 240.0 240.0
H55 CM8 C26 H57 120.0 120.0
H56 CM8 C26 H57 240.0 240.0
C26 C25 C24 H53 2.4 360.0
C25 C24 C23 H52 359.7 359.9
C23 C22 C21 H48 2.1 359.9
C23 C22 CM7 H49 180.0 270.0
C23 C22 CM7 H50 300.0 30.0
C23 C22 CM7 H51 60.0 150.1
C22 C21 C20 H47 356.8 0.0
CM7 C22 C21 H48 186.2 180.0
H49 CM7 C22 H50 240.0 240.0
H49 CM7 C22 H51 120.0 119.9
H50 CM7 C22 H51 240.0 240.0
C21 C20 C19 H46 4.6 0.1
C19 C18 C17 H42 6.3 0.0
C19 C18 CM6 H43 180.0 270.0
C19 C18 CM6 H44 300.0 30.0
C19 C18 CM6 H45 60.0 149.9
C18 C17 C16 H41 352.6 360.0
CM6 C18 C17 H42 182.4 180.0
H43 CM6 C18 H44 240.0 239.9
H43 CM6 C18 H45 120.0 120.0
H44 CM6 C18 H45 240.0 240.1
C17 C16 C15 H40 4.0 359.9
C16 C15 C14 H39 349.4 359.9
CM5 C13 C12 H35 183.5 180.0
C14 C13 C12 H35 2.7 360.0
C13 C12 C11 H34 359.8 0.0
C12 C11 C10 H33 7.5 0.0
C10 C9 C8 H29 8.4 0.0
CM4 C9 C8 H29 189.5 180.0
C9 C8 C7 H28 0.6 0.1
C8 C7 C6 H27 356.1 0.0
C6 C5 C4 H22 20.1 335.0
C6 C5 C4 H23 138.6 215.1
CM3 C5 C4 H22 202.7 154.9
CM3 C5 C4 H23 321.3 35.0
C5 C4 C3 H20 315.1 60.0
C5 C4 C3 H21 74.8 300.0
H22 C4 C5 H23 241.4 119.9
C4 C3 C2 H18 288.1 60.0
C4 C3 C2 H19 46.4 300.0
H20 C3 C4 H21 240.3 120.0
H18 C2 C3 H19 241.7 120.0
C1 O1' C1' H1 17.4 46.8
C2' C1' O1' O5' 238.9 240.0
O1' C1' O5' C5' 190.7 178.8
O5' C1' O1' H1 239.5 239.9
C2' C1' O1' H1 118.3 119.9
O1' C1' C2' H2 43.6 57.8
O1' C1' O5' H1 120.5 120.0
O5' C1' C2' C3' 43.8 57.6
C2' C1' O5' H1 239.8 240.1
O5' C1' C2' H2 283.5 297.7
C1' O5' C5' H5 301.2 301.2
O1' C1' C2' O5' 120.1 120.0
O1' C1' C2' H1 241.0 240.0
C2' C1' O5' C5' 310.0 298.9
O5' C1' C2' H1 120.9 120.0
O2' C2' C1' H2 240.7 239.8
C1' C2' C3' C4' 311.9 303.0
C1' C2' C3' O3' 189.5 183.2
C3' C2' C1' H2 120.4 119.9
C1' C2' C3' H3 70.8 62.9
C5' O5' C1' H1 70.2 58.8
C6' C5' O5' H5 241.7 240.0
O5' C5' C6' H6 275.7 185.0
O5' C5' C6' H7 155.2 305.1
O5' C5' C4' H4 56.9 62.3
O2' C2' C1' O5' 164.1 177.5
O2' C2' C1' H1 43.2 57.5
C1' C2' O2' H2 118.2 120.2
O2' C2' C3' O3' 67.2 63.3
C3' C2' O2' H2 243.4 239.8
O2' C2' C3' H3 308.6 303.0
O6' C6' C5' H5 276.6 305.1
C5' C6' O6' H6 240.3 120.0
C5' C6' O6' H7 119.7 240.0
H6 C6' O6' H7 239.5 120.0
C3' C2' C1' O5' 43.8 57.6
C3' C2' C1' H1 282.9 297.6
C1' C2' C3' H2 239.9 240.1
O2' C2' C3' H2 117.6 120.2
C4' C3' C2' O3' 122.5 119.8
C2' C3' C4' O4' 177.5 176.9
C4' C3' C2' H3 241.1 240.1
C2' C3' C4' H4 297.5 297.0
O3' C3' C2' H3 118.6 120.3
C2' C3' O3' H9 180.0 300.0
C1' O5' C5' C6' 182.9 181.1
O5' C5' C6' H5 118.8 120.0
O6' C6' C5' H6 119.8 240.0
O6' C6' C5' H7 240.3 120.0
C6' C5' C4' O4' 56.3 62.5
C6' C5' C4' H4 295.7 302.3
H6 C6' C5' H7 120.5 239.9
C1' O5' C5' C4' 59.9 61.1
C5' C4' C3' O3' 176.3 176.8
C3' C4' C5' O4' 121.4 119.9
C5' C4' C3' H3 296.5 297.1
C3' C4' C5' H4 242.0 240.1
O4' C4' C5' H4 120.5 120.2
C5' C4' O4' H10 180.0 179.7
C2' C3' C4' O3' 239.2 240.2
C4' C3' C2' H2 72.1 62.9
C2' C3' C4' H3 118.9 119.9
C5' C4' C3' O4' 237.9 240.1
C5' C4' C3' H4 118.0 120.0
O3' C3' C4' H3 239.7 239.7
C4' C3' O3' H9 57.9 180.5
O4' C4' C3' H4 240.0 239.9
C3' C4' O4' H10 59.0 60.1
C2' C3' O3' C4' 122.1 119.5
O3' C3' C2' H2 309.6 303.1
C2' C3' O3' H3 241.9 239.8
O3' C3' C4' O4' 298.4 296.7
C4' C3' O3' H3 119.8 120.2
O3' C3' C4' H4 58.3 56.9
C5' C4' O4' H4 240.2 239.8
O4' C4' C3' O3' 298.4 296.7
O4' C4' C3' H3 58.6 57.0
C3' C4' O4' H4 119.2 120.1
O1' C1' H1 O5' 239.7 239.9
C2' C1' H1 O5' 121.7 120.0
H1 C1' O5' C5' 70.2 58.8
H1 C1' C2' C3' 282.9 297.6
H1 C1' C2' H2 162.6 177.7
H2 C2' C1' O5' 283.5 297.7
C1' C2' H2 C3' 124.6 119.6
H2 C2' C1' H1 162.6 177.7
H2 C2' C3' C4' 72.1 62.9
H2 C2' C3' O3' 309.6 303.1
H2 C2' C3' H3 191.0 182.8
C2' C3' H3 C4' 239.7 240.4
C2' C3' H3 O3' 118.2 120.2
H3 C3' C2' H2 191.0 182.8
C4' C3' H3 O3' 238.5 239.8
H3 C3' C4' O4' 58.6 57.0
H3 C3' C4' H4 178.6 177.2
H3 C3' O3' H9 298.1 60.2
C5' C4' H4 O4' 121.4 120.2
H4 C4' C3' O3' 58.3 56.9
C3' C4' H4 O4' 239.9 239.9
H4 C4' C3' H3 178.6 177.2
H4 C4' O4' H10 299.8 300.0
H5 C5' C6' H6 156.9 65.0
H5 C5' C6' H7 36.4 185.1
H5 C5' C4' O4' 296.7 302.5
H5 C5' C4' H4 176.2 182.2
O6' C6' H6 H7 120.7 240.0
H6 C6' C5' H5 156.9 65.0
C5' C6' H6 H7 239.3 120.1
O6' C6' H7 H6 239.3 119.9
H7 C6' C5' H5 36.4 185.1
C5' C6' H7 H6 120.7 239.9
H8 O2' C2' H2 61.8 299.8
H9 O3' C3' H3 298.1 60.2
H10 O4' C4' H4 299.8 300.0
H11 O6' C6' H6 299.7 60.0
H11 O6' C6' H7 60.3 300.0
H13 CM1 H12 H14 120.0 119.9
H12 CM1 H13 H14 240.0 240.0
H12 CM1 H14 H13 120.0 119.9
H16 CM2 H15 H17 120.0 120.0
H15 CM2 H16 H17 240.0 240.0
H15 CM2 H17 H16 120.0 120.0
C3 C2 H18 H19 117.4 240.0
C3 C2 H19 H18 242.6 120.0
C4 C3 H20 H21 119.5 240.0
H20 C3 C2 H18 168.0 180.0
H20 C3 C2 H19 286.2 60.0
C4 C3 H21 H20 240.5 120.0
H21 C3 C2 H18 48.3 300.0
H21 C3 C2 H19 166.6 180.0
C5 C4 H22 H23 117.8 240.0
H22 C4 C3 H20 194.4 180.0
H22 C4 C3 H21 314.0 60.0
C5 C4 H23 H22 242.2 119.9
H23 C4 C3 H20 75.8 300.0
H23 C4 C3 H21 195.5 180.0
H25 CM3 H24 H26 120.0 120.0
H24 CM3 H25 H26 240.0 240.1
H24 CM3 H26 H25 120.0 120.0
H28 C7 C6 H27 176.1 179.9
H29 C8 C7 H28 180.6 180.1
H31 CM4 H30 H32 120.0 120.1
H30 CM4 H31 H32 240.0 239.9
H30 CM4 H32 H31 120.0 120.0
H34 C11 C10 H33 187.5 180.0
H35 C12 C11 H34 179.8 180.0
H37 CM5 H36 H38 120.0 120.0
H36 CM5 H37 H38 240.0 240.0
H36 CM5 H38 H37 120.0 120.0
H40 C15 C14 H39 169.4 180.0
H41 C16 C15 H40 184.0 180.0
H42 C17 C16 H41 172.7 180.0
C18 CM6 H43 H44 120.0 120.1
C18 CM6 H43 H45 240.0 240.0
H44 CM6 H43 H45 120.0 119.9
C18 CM6 H44 H43 240.0 239.9
C18 CM6 H44 H45 120.0 119.9
H43 CM6 H44 H45 240.0 240.0
C18 CM6 H45 H43 120.0 120.0
C18 CM6 H45 H44 240.0 240.0
H43 CM6 H45 H44 120.0 120.0
H47 C20 C19 H46 184.6 180.0
H48 C21 C20 H47 176.8 180.1
C22 CM7 H49 H50 120.0 120.0
C22 CM7 H49 H51 240.0 240.0
H50 CM7 H49 H51 120.0 120.0
C22 CM7 H50 H49 240.0 240.0
C22 CM7 H50 H51 120.0 120.0
H49 CM7 H50 H51 240.0 240.0
C22 CM7 H51 H49 120.0 120.0
C22 CM7 H51 H50 240.0 240.0
H49 CM7 H51 H50 120.0 120.0
H53 C24 C23 H52 179.8 180.0
H54 C25 C24 H53 182.4 180.0
C26 CM8 H55 H56 120.0 120.0
C26 CM8 H55 H57 240.0 240.0
H56 CM8 H55 H57 120.0 120.0
C26 CM8 H56 H55 240.0 240.0
C26 CM8 H56 H57 120.0 120.0
H55 CM8 H56 H57 240.0 240.0
C26 CM8 H57 H55 120.1 120.0
C26 CM8 H57 H56 240.0 240.0
H55 CM8 H57 H56 120.0 120.0
H59 C28 C27 H58 190.3 180.1
H60 C29 C28 H59 169.7 177.1
H61 CM9 C30 CM0 180.0 90.0
H62 CM9 H61 H63 120.0 120.0
H62 CM9 C30 CM0 300.0 210.0
H61 CM9 H62 H63 240.0 240.0
H63 CM9 C30 CM0 60.0 330.0
H61 CM9 H63 H62 120.0 120.0
C30 CM0 H64 H65 120.0 120.0
C30 CM0 H64 H66 240.0 240.0
H65 CM0 H64 H66 120.0 120.0
C30 CM0 H65 H64 240.0 240.0
C30 CM0 H65 H66 120.0 120.0
H64 CM0 H65 H66 240.0 240.0
C30 CM0 H66 H64 120.0 120.0
C30 CM0 H66 H65 240.0 240.0
H64 CM0 H66 H65 120.0 120.0