Atom Nomenclature for RG1

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for RG1

Atom Name (V3) Atom Name (V2)
C1' C1
C2' C2
C3' C3
C4' C4
C5' C5
C6' C6
O1' O1
O2' O2
O3' O3
O4' O4
O5' O5
O6' O6
C1 C7
CM1 C8
CM2 C9
C2 C10
C3 C11
C4 C12
C5 C13
CM3 C14
C6 C15
C7 C16
C8 C17
C9 C18
CM4 C19
C10 C20
C11 C21
C12 C22
C13 C23
CM5 C24
C14 C25
C15 C26
C16 C27
C17 C28
C18 C29
CM6 C30
C19 C31
C20 C32
C21 C33
C22 C34
CM7 C35
C23 C36
C24 C37
C25 C38
C26 C39
CM8 C40
C27 C41
C28 C42
C29 C43
C30 C44
CM9 C45
CM0 C46
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23
H24 H24
H25 H25
H26 H26
H27 H27
H28 H28
H29 H29
H30 H30
H31 H31
H32 H32
H33 H33
H34 H34
H35 H35
H36 H36
H37 H37
H38 H38
H39 H39
H40 H40
H41 H41
H42 H42
H43 H43
H44 H44
H45 H45
H46 H46
H47 H47
H48 H48
H49 H49
H50 H50
H51 H51
H52 H52
H53 H53
H54 H54
H55 H55
H56 H56
H57 H57
H58 H58
H59 H59
H60 H60
H61 H61
H62 H62
H63 H63
H64 H64
H65 H65
H66 H66