PDB Chemical Component RFM
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for RFM
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C13 |
C12 |
1.405 |
1.384 |
| C13 |
C14 |
1.402 |
1.384 |
| C12 |
C11 |
1.432 |
1.380 |
| C14 |
C15 |
1.431 |
1.379 |
| C11 |
C10 |
1.389 |
1.396 |
| C15 |
C10 |
1.411 |
1.395 |
| C10 |
C09 |
1.528 |
1.478 |
| N08 |
C09 |
1.441 |
1.347 |
| N08 |
C07 |
1.412 |
1.400 |
| C09 |
O16 |
1.239 |
1.216 |
| C17 |
C07 |
1.400 |
1.388 |
| C17 |
C18 |
1.394 |
1.380 |
| C07 |
C06 |
1.357 |
1.389 |
| C18 |
C04 |
1.379 |
1.389 |
| C23 |
S22 |
1.626 |
1.758 |
| C23 |
C24 |
1.446 |
1.334 |
| S22 |
C21 |
1.604 |
1.759 |
| C06 |
C05 |
1.408 |
1.380 |
| C24 |
C20 |
1.522 |
1.384 |
| C04 |
C05 |
1.379 |
1.389 |
| C04 |
N03 |
1.455 |
1.401 |
| C25 |
N26 |
1.425 |
1.465 |
| C25 |
C02 |
1.528 |
1.507 |
| N34 |
N26 |
1.353 |
1.403 |
| N34 |
N33 |
1.331 |
1.287 |
| C21 |
C20 |
1.469 |
1.334 |
| N26 |
C27 |
1.383 |
1.374 |
| C20 |
C19 |
1.532 |
1.506 |
| N33 |
C32 |
1.405 |
1.347 |
| N03 |
C02 |
1.440 |
1.348 |
| N03 |
C19 |
1.452 |
1.464 |
| C02 |
O01 |
1.232 |
1.213 |
| C27 |
C32 |
1.394 |
1.406 |
| C27 |
C28 |
1.423 |
1.391 |
| C32 |
C31 |
1.406 |
1.402 |
| C28 |
C29 |
1.397 |
1.366 |
| C31 |
C30 |
1.407 |
1.364 |
| C29 |
C30 |
1.405 |
1.389 |
| C05 |
H1 |
1.080 |
1.081 |
| C06 |
H2 |
1.080 |
1.080 |
| N08 |
H3 |
1.000 |
0.971 |
| C11 |
H4 |
1.080 |
1.080 |
| C12 |
H5 |
1.080 |
1.080 |
| C13 |
H6 |
1.080 |
1.080 |
| C14 |
H7 |
1.080 |
1.080 |
| C15 |
H8 |
1.080 |
1.080 |
| C17 |
H9 |
1.080 |
1.080 |
| C18 |
H10 |
1.080 |
1.081 |
| C19 |
H11 |
1.100 |
1.090 |
| C19 |
H12 |
1.100 |
1.090 |
| C21 |
H13 |
1.080 |
1.080 |
| C23 |
H14 |
1.081 |
1.080 |
| C24 |
H15 |
1.080 |
1.080 |
| C25 |
H16 |
1.100 |
1.090 |
| C25 |
H17 |
1.100 |
1.090 |
| C28 |
H18 |
1.080 |
1.080 |
| C29 |
H19 |
1.079 |
1.081 |
| C30 |
H20 |
1.080 |
1.081 |
| C31 |
H21 |
1.080 |
1.080 |
Bond Angles for RFM
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C13 |
C12 |
H5 |
120.3 |
119.9 |
| C13 |
C14 |
C15 |
120.0 |
120.1 |
| C14 |
C13 |
H6 |
119.7 |
119.9 |
| C13 |
C14 |
H7 |
120.0 |
119.9 |
| C12 |
C11 |
H4 |
120.1 |
120.0 |
| C15 |
C14 |
H7 |
120.0 |
120.0 |
| C14 |
C15 |
H8 |
120.5 |
120.0 |
| C10 |
C09 |
O16 |
120.8 |
120.0 |
| N08 |
C09 |
O16 |
123.5 |
120.0 |
| C09 |
N08 |
H3 |
116.6 |
120.0 |
| C18 |
C17 |
H9 |
119.9 |
120.0 |
| C17 |
C18 |
H10 |
120.4 |
120.0 |
| C07 |
C06 |
H2 |
120.2 |
120.1 |
| C24 |
C23 |
H14 |
125.0 |
125.1 |
| C23 |
C24 |
H15 |
125.1 |
122.6 |
| S22 |
C21 |
H13 |
125.0 |
125.2 |
| C06 |
C05 |
H1 |
120.1 |
120.0 |
| C04 |
C05 |
H1 |
120.0 |
120.0 |
| C04 |
N03 |
C19 |
119.7 |
120.0 |
| C25 |
N26 |
C27 |
123.6 |
126.8 |
| N26 |
C25 |
H16 |
108.7 |
109.5 |
| N26 |
C25 |
H17 |
108.7 |
109.5 |
| N26 |
C27 |
C32 |
106.5 |
106.1 |
| N26 |
C27 |
C28 |
133.0 |
134.0 |
| C20 |
C19 |
H11 |
110.2 |
109.5 |
| C20 |
C19 |
H12 |
110.3 |
109.5 |
| N03 |
C19 |
H11 |
110.3 |
109.4 |
| N03 |
C19 |
H12 |
110.3 |
109.5 |
| C28 |
C27 |
C32 |
120.5 |
119.9 |
| C27 |
C32 |
C31 |
120.0 |
119.1 |
| C27 |
C28 |
C29 |
119.1 |
119.8 |
| C27 |
C28 |
H18 |
120.5 |
120.1 |
| C32 |
C31 |
H21 |
120.0 |
120.1 |
| C28 |
C29 |
C30 |
120.6 |
120.6 |
| C29 |
C28 |
H18 |
120.5 |
120.1 |
| C28 |
C29 |
H19 |
119.7 |
119.7 |
| C31 |
C30 |
H20 |
120.0 |
119.6 |
| C30 |
C29 |
H19 |
119.7 |
119.7 |
| C29 |
C30 |
H20 |
120.0 |
119.6 |
| H11 |
C19 |
H12 |
109.5 |
109.4 |
| H16 |
C25 |
H17 |
109.5 |
109.5 |
Torsion Angles for RFM
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C13 |
C12 |
C11 |
H4 |
179.7 |
180.0 |
| C14 |
C13 |
C12 |
H5 |
180.3 |
180.1 |
| C15 |
C14 |
C13 |
H7 |
180.0 |
179.7 |
| C13 |
C14 |
C15 |
H8 |
180.2 |
180.1 |
| C15 |
C14 |
C13 |
H6 |
179.8 |
179.7 |
| C13 |
C14 |
C15 |
H7 |
180.0 |
180.3 |
| C11 |
C10 |
C09 |
O16 |
207.4 |
360.0 |
| C15 |
C10 |
C09 |
O16 |
27.5 |
179.7 |
| N08 |
C09 |
C10 |
O16 |
180.4 |
180.0 |
| C10 |
C09 |
N08 |
H3 |
1.9 |
5.3 |
| C10 |
C09 |
N08 |
O16 |
179.6 |
180.0 |
| N08 |
C07 |
C06 |
H2 |
358.1 |
0.0 |
| O16 |
C09 |
N08 |
H3 |
182.3 |
185.3 |
| C17 |
C07 |
C06 |
H2 |
181.9 |
180.0 |
| C07 |
C06 |
C05 |
H1 |
178.9 |
180.0 |
| C18 |
C04 |
C05 |
H1 |
180.1 |
180.3 |
| C18 |
C04 |
N03 |
C19 |
265.7 |
351.7 |
| C23 |
S22 |
C21 |
H13 |
180.2 |
180.0 |
| C04 |
C05 |
C06 |
H1 |
180.0 |
180.0 |
| C24 |
C20 |
C19 |
H11 |
195.7 |
153.4 |
| C24 |
C20 |
C19 |
H12 |
316.7 |
33.5 |
| C06 |
C05 |
C04 |
H1 |
180.0 |
180.0 |
| C05 |
C04 |
N03 |
C19 |
85.1 |
171.9 |
| C04 |
N03 |
C19 |
H11 |
291.3 |
36.8 |
| C04 |
N03 |
C19 |
H12 |
170.2 |
156.7 |
| C25 |
N26 |
C27 |
C32 |
180.9 |
180.0 |
| C25 |
N26 |
C27 |
C28 |
0.9 |
359.9 |
| H16 |
C25 |
N26 |
H17 |
240.9 |
120.0 |
| N34 |
N26 |
C25 |
H16 |
205.0 |
149.7 |
| N34 |
N26 |
C25 |
H17 |
324.1 |
29.6 |
| C21 |
C20 |
C19 |
H11 |
18.0 |
333.6 |
| C21 |
C20 |
C19 |
H12 |
139.0 |
213.7 |
| C27 |
N26 |
C25 |
H16 |
23.9 |
330.0 |
| C27 |
N26 |
C25 |
H17 |
143.0 |
210.0 |
| C28 |
C27 |
N26 |
C32 |
180.0 |
180.0 |
| N26 |
C27 |
C32 |
C31 |
180.2 |
179.9 |
| N26 |
C27 |
C28 |
C29 |
179.7 |
180.1 |
| N26 |
C27 |
C28 |
H18 |
359.7 |
359.9 |
| N03 |
C19 |
C20 |
H11 |
240.5 |
120.0 |
| N03 |
C19 |
C20 |
H12 |
119.5 |
239.9 |
| H11 |
C19 |
C20 |
H12 |
239.0 |
119.9 |
| N33 |
C32 |
C31 |
H21 |
0.4 |
359.9 |
| C20 |
C19 |
N03 |
H11 |
119.5 |
240.0 |
| C20 |
C19 |
N03 |
H12 |
240.5 |
120.1 |
| H11 |
C19 |
N03 |
H12 |
121.1 |
240.1 |
| N26 |
C27 |
C32 |
C28 |
180.0 |
180.0 |
| C32 |
C27 |
C28 |
C29 |
359.7 |
0.0 |
| C32 |
C27 |
C28 |
H18 |
179.7 |
179.9 |
| C27 |
C32 |
C31 |
H21 |
179.8 |
180.0 |
| N26 |
C27 |
C28 |
C32 |
180.0 |
180.0 |
| C28 |
C27 |
C32 |
C31 |
0.2 |
360.0 |
| C27 |
C28 |
C29 |
C30 |
0.4 |
359.9 |
| C29 |
C28 |
C27 |
H18 |
180.0 |
180.1 |
| C27 |
C28 |
C29 |
H19 |
180.3 |
180.0 |
| C32 |
C31 |
C30 |
H20 |
180.2 |
180.0 |
| C29 |
C28 |
C27 |
C32 |
359.7 |
0.0 |
| C27 |
C28 |
C29 |
H18 |
180.0 |
179.9 |
| C30 |
C29 |
C28 |
H19 |
180.0 |
179.9 |
| C28 |
C29 |
C30 |
H20 |
179.7 |
180.0 |
| C27 |
C32 |
C31 |
C30 |
359.8 |
0.1 |
| C31 |
C30 |
C29 |
H19 |
179.7 |
180.0 |
| C29 |
C30 |
C31 |
H20 |
180.0 |
179.9 |
| C30 |
C29 |
C28 |
H18 |
180.3 |
180.1 |
| C28 |
C29 |
C30 |
H19 |
180.0 |
180.1 |
| C31 |
C30 |
C29 |
H20 |
180.0 |
180.1 |
| H2 |
C06 |
C05 |
H1 |
358.9 |
0.0 |
| H3 |
N08 |
C09 |
O16 |
182.3 |
185.3 |
| H5 |
C12 |
C11 |
H4 |
359.7 |
360.0 |
| H6 |
C13 |
C12 |
H5 |
0.3 |
0.0 |
| H6 |
C13 |
C14 |
C15 |
179.8 |
179.7 |
| H6 |
C13 |
C14 |
H7 |
359.8 |
0.0 |
| C13 |
C14 |
H7 |
C15 |
180.0 |
179.7 |
| H7 |
C14 |
C13 |
H6 |
359.8 |
0.0 |
| H7 |
C14 |
C15 |
H8 |
0.2 |
359.8 |
| H8 |
C15 |
C14 |
H7 |
0.2 |
359.8 |
| H9 |
C17 |
C18 |
H10 |
0.6 |
359.8 |
| H10 |
C18 |
C17 |
H9 |
0.6 |
359.8 |
| C20 |
C19 |
H11 |
H12 |
121.5 |
240.0 |
| N03 |
C19 |
H11 |
H12 |
238.5 |
119.9 |
| C20 |
C19 |
H12 |
H11 |
238.5 |
120.0 |
| N03 |
C19 |
H12 |
H11 |
121.5 |
240.1 |
| H14 |
C23 |
C24 |
H15 |
0.8 |
359.8 |
| H15 |
C24 |
C23 |
H14 |
0.8 |
359.8 |
| H16 |
C25 |
N26 |
C27 |
23.9 |
330.0 |
| N26 |
C25 |
H16 |
H17 |
118.6 |
240.0 |
| H17 |
C25 |
N26 |
C27 |
143.0 |
210.0 |
| N26 |
C25 |
H17 |
H16 |
241.4 |
120.0 |
| H18 |
C28 |
C27 |
C32 |
179.7 |
179.9 |
| C27 |
C28 |
H18 |
C29 |
180.0 |
180.1 |
| H18 |
C28 |
C29 |
C30 |
180.3 |
180.1 |
| H18 |
C28 |
C29 |
H19 |
0.3 |
0.1 |
| C28 |
C29 |
H19 |
C30 |
180.0 |
179.9 |
| H19 |
C29 |
C28 |
H18 |
0.3 |
0.1 |
| H19 |
C29 |
C30 |
H20 |
359.7 |
359.9 |
| H20 |
C30 |
C29 |
H19 |
359.7 |
359.9 |
| H21 |
C31 |
C30 |
H20 |
0.2 |
0.1 |