PDB Chemical Component RER

Ideal Model

Chemical Description

Name vancosamine
Synonyms (1R,3S,4S,5S)-3-amino-2,3,6-trideoxy-3-methyl-alpha-L-arabino-hexopyranose
Formula C7 H15 N O3
Formal charge 0
Molecular weight 161.199 g/mol
Component type L-saccharide, alpha linking

Chemical features

Atom count 26
Chiral atom count 4
Chiral atoms C1 C3 C4 C5
Observed leaving atoms O1
Bond count 26
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 3-amino-2,3,6-trideoxy-3-methyl-alpha-L-lyxo-hexopyranose
Systematic name (OpenEye OEToolkits) (2R,4S,5S,6S)-4-amino-4,6-dimethyl-oxane-2,5-diol

Chemical Descriptors

Stereo SMILES (CACTVS) C[C@@H]1O[C@@H](O)C[C@](C)(N)[C@@H]1O
SMILES (CACTVS) C[CH]1O[CH](O)C[C](C)(N)[CH]1O
Stereo SMILES (OpenEye) C[C@H]1[C@H]([C@@](C[C@@H](O1)O)(C)N)O
InChI descriptor InChI=1S/C7H15NO3/c1-4-6(10)7(2,8)3-5(9)11-4/h4-6,9-10H,3,8H2,1-2H3/t4-,5+,6+,7-/m0/s1
InChIKey descriptor OIJZDPGKNVKVBL-WNJXEPBRSA-N

Status Information

Last modified 2020-07-17
Created 2010-09-06
Release status REL
Model PDB code 1C0Q
Processing site EBI