PDB Chemical Component RE1

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for RE1

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N2 C4 1.538 1.483
N2 H1 1.020 1.026
N2 H2 1.020 1.026
N2 H3 1.020 1.026
C4 C5 1.539 1.508
C4 H4 1.115 1.094
C4 H5 1.115 1.093
C5 N3 1.348 1.385
C5 O3 1.199 1.228
N3 C6 1.459 1.448
N3 H6 1.019 1.015
C6 C7 1.531 1.535
C6 C13 1.530 1.540
C6 H7 1.115 1.097
C7 C8 1.540 1.535
C7 H8 1.115 1.097
C7 H9 1.116 1.098
C8 C9 1.579 1.534
C8 H10 1.115 1.095
C8 H11 1.114 1.094
C9 C10 1.524 1.528
C9 H12 1.116 1.096
C9 H13 1.115 1.097
C10 C11 1.523 1.516
C10 H14 1.115 1.096
C10 H15 1.115 1.096
C11 N4 1.328 1.385
C11 O6 1.196 1.229
N4 C12 1.482 1.454
N4 H16 1.020 1.016
C12 P1 1.819 1.827
C12 C14 1.549 1.522
C12 H17 1.115 1.096
P1 O7 1.482 1.511
P1 O8 1.485 1.512
C13 O4 1.260 1.264
C13 O5 1.239 1.264
C14 H18 1.116 1.094
C14 H19 1.115 1.095
C14 H20 1.115 1.094
P1 O9   1.632
O9 H9O   0.981

Bond Angles for RE1

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C4 N2 H1 106.3 111.0
C4 N2 H2 113.3 111.0
C4 N2 H3 113.3 111.0
N2 C4 C5 106.4 111.4
N2 C4 H4 113.4 107.0
N2 C4 H5 113.4 107.1
H1 N2 H2 113.4 107.9
H1 N2 H3 113.5 107.9
H2 N2 H3 97.1 107.9
C5 C4 H4 113.3 110.5
C5 C4 H5 113.3 110.4
C4 C5 N3 113.6 111.5
C4 C5 O3 122.7 123.3
H4 C4 H5 97.1 110.4
N3 C5 O3 123.7 125.2
C5 N3 C6 125.1 122.1
C5 N3 H6 113.1 119.9
C6 N3 H6 121.8 118.0
N3 C6 C7 112.8 110.1
N3 C6 C13 108.2 113.4
N3 C6 H7 107.8 105.2
C7 C6 C13 108.3 114.6
C7 C6 H7 107.6 107.5
C6 C7 C8 114.7 114.0
C6 C7 H8 110.3 108.9
C6 C7 H9 110.3 109.4
C13 C6 H7 112.3 105.4
C6 C13 O4 121.8 115.4
C6 C13 O5 111.8 115.8
C8 C7 H8 110.3 108.8
C8 C7 H9 110.3 109.0
C7 C8 C9 105.0 111.1
C7 C8 H10 113.9 110.2
C7 C8 H11 113.9 109.5
H8 C7 H9 99.9 106.4
C9 C8 H10 113.9 109.3
C9 C8 H11 113.9 109.5
C8 C9 C10 117.0 112.7
C8 C9 H12 109.5 109.1
C8 C9 H13 109.5 109.4
H10 C8 H11 96.6 107.3
C10 C9 H12 109.5 108.4
C10 C9 H13 109.4 109.9
C9 C10 C11 111.7 111.5
C9 C10 H14 111.4 109.6
C9 C10 H15 111.4 110.7
H12 C9 H13 100.6 107.1
C11 C10 H14 111.4 107.2
C11 C10 H15 111.4 110.9
C10 C11 N4 115.5 112.9
C10 C11 O6 120.3 121.7
H14 C10 H15 99.0 106.8
N4 C11 O6 124.1 125.4
C11 N4 C12 121.3 122.8
C11 N4 H16 113.8 118.7
C12 N4 H16 124.9 118.5
N4 C12 P1 105.7 105.3
N4 C12 C14 111.3 110.7
N4 C12 H17 111.4 108.7
P1 C12 C14 111.4 113.8
P1 C12 H17 111.3 108.5
C12 P1 O7 110.7 108.7
C12 P1 O8 110.3 107.7
C12 P1 O9   99.5
C14 C12 H17 105.8 109.6
C12 C14 H18 111.3 111.2
C12 C14 H19 111.6 111.1
C12 C14 H20 111.6 110.7
O7 P1 O8 119.2 122.2
O7 P1 O9   106.8
O8 P1 O9   109.6
O4 C13 O5 126.3 128.8
H18 C14 H19 111.5 107.7
H18 C14 H20 111.5 108.3
H19 C14 H20 98.8 107.7
P1 O9 H9O   118.4

Torsion Angles for RE1

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
H1 N2 C4 H2 234.7 120.0
H1 N2 C4 H3 125.3 240.0
H2 N2 C4 H3 250.6 120.0
C5 C4 N2 H4 234.8 239.2
C5 C4 N2 H5 125.2 120.8
N2 C4 C5 N3 190.8 180.0
N2 C4 C5 O3 10.4 0.0
H4 C4 N2 H5 250.4 241.6
C4 N2 H1 H2 125.2 238.1
C4 N2 H1 H3 234.8 121.8
H1 N2 C4 C5 180.0 65.8
H1 N2 C4 H4 305.2 186.6
H1 N2 C4 H5 54.8 305.0
H2 N2 H1 H3 109.6 243.7
C4 N2 H2 H1 238.6 121.8
C4 N2 H2 H3 119.2 238.2
H2 N2 C4 C5 305.3 305.7
H2 N2 C4 H4 70.5 66.6
H2 N2 C4 H5 180.0 184.9
H1 N2 H2 H3 240.6 116.3
C4 N2 H3 H1 121.4 238.2
C4 N2 H3 H2 240.8 121.8
H3 N2 C4 C5 54.7 185.7
H3 N2 C4 H4 179.9 306.6
H3 N2 C4 H5 289.5 64.9
H1 N2 H3 H2 119.4 243.6
C5 C4 N2 H1 180.0 65.8
C5 C4 N2 H2 305.3 305.7
C5 C4 N2 H3 54.7 185.7
N2 C4 C5 H4 125.3 118.8
N2 C4 C5 H5 234.7 241.2
H4 C4 C5 H5 109.5 122.4
N3 C5 C4 O3 180.3 180.0
C4 C5 N3 C6 182.7 179.9
C4 C5 N3 H6 2.7 358.5
H4 C4 N2 H1 305.2 186.6
H4 C4 N2 H2 70.5 66.6
H4 C4 N2 H3 179.9 306.6
N2 C4 H4 C5 238.6 238.5
N2 C4 H4 H5 119.4 116.2
C5 C4 H4 H5 240.8 237.6
H4 C4 C5 N3 65.5 61.2
H4 C4 C5 O3 245.2 241.2
H5 C4 N2 H1 54.8 305.0
H5 C4 N2 H2 180.0 184.9
H5 C4 N2 H3 289.5 64.9
N2 C4 H5 C5 121.4 121.5
N2 C4 H5 H4 240.6 243.9
C5 C4 H5 H4 119.2 122.4
H5 C4 C5 N3 316.0 298.9
H5 C4 C5 O3 135.7 118.8
N3 C5 C4 H4 65.5 61.2
N3 C5 C4 H5 316.0 298.9
C4 C5 N3 O3 179.7 180.0
C6 N3 C5 H6 180.0 181.4
C5 N3 C6 C7 116.1 85.6
C5 N3 C6 C13 235.8 215.4
C5 N3 C6 H7 357.4 330.1
O3 C5 C4 H4 245.2 241.2
O3 C5 C4 H5 135.7 118.8
C4 C5 O3 N3 180.4 180.0
O3 C5 N3 C6 3.0 359.9
O3 C5 N3 H6 183.0 178.5
C6 N3 C5 O3 3.0 359.9
C5 N3 C6 H6 180.0 178.6
C7 C6 N3 C13 240.3 230.2
C7 C6 N3 H7 118.6 115.5
N3 C6 C7 C8 304.1 67.5
N3 C6 C7 H8 69.4 189.2
N3 C6 C7 H9 178.9 305.2
C13 C6 N3 H7 238.4 245.3
N3 C6 C13 O4 329.3 204.6
N3 C6 C13 O5 153.2 23.2
H6 N3 C5 O3 183.0 178.5
C5 N3 H6 C6 180.0 181.4
H6 N3 C6 C7 296.1 267.0
H6 N3 C6 C13 55.8 36.8
H6 N3 C6 H7 177.5 151.5
C7 C6 N3 H6 296.1 267.0
N3 C6 C7 C13 119.7 129.2
N3 C6 C7 H7 241.2 245.9
C13 C6 C7 H7 121.6 116.7
C7 C6 C13 O4 91.8 332.1
C7 C6 C13 O5 275.7 150.7
C8 C7 C6 H8 234.7 238.2
C8 C7 C6 H9 125.3 122.3
C6 C7 C8 C9 187.1 181.8
C6 C7 C8 H10 312.3 303.0
C6 C7 C8 H11 61.8 60.8
H8 C7 C6 H9 250.5 244.1
C13 C6 N3 H6 55.8 36.8
N3 C6 C13 C7 237.5 232.5
N3 C6 C13 H7 118.8 114.6
C7 C6 C13 H7 241.3 242.1
C13 C6 C7 C8 184.5 298.3
C13 C6 C7 H8 309.8 60.0
C13 C6 C7 H9 59.2 176.0
O4 C13 C6 O5 176.2 181.4
H7 C6 N3 H6 177.5 151.5
N3 C6 H7 C7 121.9 117.3
N3 C6 H7 C13 241.0 239.9
C7 C6 H7 C13 119.1 122.6
H7 C6 C7 C8 62.9 181.5
H7 C6 C7 H8 188.2 303.3
H7 C6 C7 H9 297.6 59.2
H7 C6 C13 O4 210.5 90.0
H7 C6 C13 O5 34.3 268.6
C8 C7 C6 C13 184.5 298.3
C8 C7 C6 H7 62.9 181.5
C6 C7 C8 H8 125.3 121.8
C6 C7 C8 H9 234.7 237.5
H8 C7 C8 H9 109.4 115.6
C9 C8 C7 H10 234.8 238.8
C9 C8 C7 H11 125.3 121.0
C7 C8 C9 C10 294.6 181.8
C7 C8 C9 H12 59.9 61.3
C7 C8 C9 H13 169.4 304.4
H10 C8 C7 H11 250.5 242.2
H8 C7 C6 C13 309.8 60.0
H8 C7 C6 H7 188.2 303.3
C6 C7 H8 C8 232.3 235.2
C6 C7 H8 H9 116.1 117.9
C8 C7 H8 H9 243.9 242.7
H8 C7 C8 C9 61.8 60.0
H8 C7 C8 H10 187.0 181.2
H8 C7 C8 H11 296.5 299.0
H9 C7 C6 C13 59.2 176.0
H9 C7 C6 H7 297.6 59.2
C6 C7 H9 C8 127.7 125.2
C6 C7 H9 H8 243.8 242.4
C8 C7 H9 H8 116.1 117.2
H9 C7 C8 C9 312.3 304.4
H9 C7 C8 H10 77.5 65.6
H9 C7 C8 H11 187.1 183.4
C9 C8 C7 H8 61.8 60.0
C9 C8 C7 H9 312.3 304.4
C7 C8 C9 H10 125.2 121.7
C7 C8 C9 H11 234.7 239.0
H10 C8 C9 H11 109.5 117.2
C10 C9 C8 H12 234.7 120.5
C10 C9 C8 H13 125.3 237.3
C8 C9 C10 C11 192.7 179.1
C8 C9 C10 H14 318.0 297.6
C8 C9 C10 H15 67.5 55.1
H12 C9 C8 H13 250.5 116.8
H10 C8 C7 H8 187.0 181.2
H10 C8 C7 H9 77.5 65.6
C7 C8 H10 C9 239.7 237.7
C7 C8 H10 H11 119.9 119.1
C9 C8 H10 H11 240.2 241.4
H10 C8 C9 C10 169.4 60.0
H10 C8 C9 H12 294.6 299.6
H10 C8 C9 H13 44.1 182.7
H11 C8 C7 H8 296.5 299.0
H11 C8 C7 H9 187.1 183.4
C7 C8 H11 C9 120.4 122.0
C7 C8 H11 H10 240.2 240.4
C9 C8 H11 H10 119.8 118.5
H11 C8 C9 C10 59.9 302.8
H11 C8 C9 H12 185.2 182.3
H11 C8 C9 H13 294.6 65.5
C10 C9 C8 H10 169.4 60.0
C10 C9 C8 H11 59.9 302.8
C8 C9 C10 H12 125.3 239.1
C8 C9 C10 H13 234.7 122.4
H12 C9 C10 H13 109.4 243.3
C11 C10 C9 H14 234.7 241.5
C11 C10 C9 H15 125.3 124.0
C9 C10 C11 N4 268.4 180.0
C9 C10 C11 O6 86.6 358.6
H14 C10 C9 H15 250.5 242.5
H12 C9 C8 H10 294.6 299.6
H12 C9 C8 H11 185.2 182.3
C8 C9 H12 C10 230.5 123.1
C8 C9 H12 H13 115.3 241.7
C10 C9 H12 H13 244.8 118.6
H12 C9 C10 C11 67.4 300.0
H12 C9 C10 H14 192.7 58.5
H12 C9 C10 H15 302.2 176.0
H13 C9 C8 H10 44.1 182.7
H13 C9 C8 H11 294.6 65.5
C8 C9 H13 C10 129.5 235.7
C8 C9 H13 H12 244.7 118.1
C10 C9 H13 H12 115.2 242.4
H13 C9 C10 C11 318.0 56.7
H13 C9 C10 H14 83.3 175.2
H13 C9 C10 H15 192.8 292.7
C11 C10 C9 H12 67.4 300.0
C11 C10 C9 H13 318.0 56.7
C9 C10 C11 H14 125.3 119.9
C9 C10 C11 H15 234.8 236.1
H14 C10 C11 H15 109.4 116.2
N4 C11 C10 O6 181.9 181.4
C10 C11 N4 C12 180.3 178.5
C10 C11 N4 H16 0.2 358.6
H14 C10 C9 H12 192.7 58.5
H14 C10 C9 H13 83.3 175.2
C9 C10 H14 C11 234.5 238.8
C9 C10 H14 H15 117.3 119.9
C11 C10 H14 H15 242.7 241.1
H14 C10 C11 N4 143.1 60.1
H14 C10 C11 O6 321.2 238.7
H15 C10 C9 H12 302.2 176.0
H15 C10 C9 H13 192.8 292.7
C9 C10 H15 C11 125.4 124.3
C9 C10 H15 H14 242.7 240.8
C11 C10 H15 H14 117.2 116.4
H15 C10 C11 N4 33.7 303.9
H15 C10 C11 O6 211.8 122.5
N4 C11 C10 H14 143.1 60.1
N4 C11 C10 H15 33.7 303.9
C10 C11 N4 O6 178.0 178.5
C12 N4 C11 H16 180.0 179.9
C11 N4 C12 P1 108.4 148.2
C11 N4 C12 C14 229.4 271.7
C11 N4 C12 H17 347.2 32.1
O6 C11 C10 H14 321.2 238.7
O6 C11 C10 H15 211.8 122.5
C10 C11 O6 N4 182.0 181.6
O6 C11 N4 C12 2.2 360.0
O6 C11 N4 H16 182.2 180.0
C12 N4 C11 O6 2.2 360.0
C11 N4 C12 H16 180.0 180.1
P1 C12 N4 C14 239.0 236.5
P1 C12 N4 H17 121.1 116.1
N4 C12 P1 O7 289.1 287.1
N4 C12 P1 O8 63.2 61.4
N4 C12 P1 O9   175.6
C14 C12 N4 H17 242.2 239.6
N4 C12 C14 H18 180.0 60.9
N4 C12 C14 H19 305.2 301.0
N4 C12 C14 H20 54.7 181.4
H16 N4 C11 O6 182.2 180.0
C11 N4 H16 C12 180.0 179.9
H16 N4 C12 P1 288.4 328.1
H16 N4 C12 C14 49.4 91.6
H16 N4 C12 H17 167.3 212.0
P1 C12 N4 H16 288.4 328.1
N4 C12 P1 C14 121.0 121.4
N4 C12 P1 H17 238.8 243.8
C14 C12 P1 H17 117.8 122.3
P1 C12 C14 H18 297.7 179.3
P1 C12 C14 H19 62.9 59.4
P1 C12 C14 H20 172.4 299.8
O7 P1 C12 O8 225.9 225.6
O7 P1 C12 O9   111.4
O8 P1 C12 O9   245.8
C12 P1 O9 H9O   245.5
C14 C12 N4 H16 49.4 91.6
N4 C12 C14 P1 242.3 241.6
N4 C12 C14 H17 121.2 119.8
P1 C12 C14 H17 238.9 238.2
C14 C12 P1 O7 168.1 165.6
C14 C12 P1 O8 302.2 300.0
C14 C12 P1 O9   54.2
H18 C14 C12 H19 234.8 120.0
H18 C14 C12 H20 125.3 239.5
H19 C14 C12 H20 250.5 119.6
H17 C12 N4 H16 167.3 212.0
N4 C12 H17 P1 117.8 114.0
N4 C12 H17 C14 238.9 238.9
P1 C12 H17 C14 121.1 124.9
H17 C12 P1 O7 50.3 43.3
H17 C12 P1 O8 184.4 177.6
H17 C12 P1 O9   291.9
H17 C12 C14 H18 58.8 301.1
H17 C12 C14 H19 184.1 181.1
H17 C12 C14 H20 293.5 61.6
O7 P1 C12 C14 168.1 165.6
O7 P1 C12 H17 50.3 43.3
C12 P1 O7 O8 129.5 126.4
C12 P1 O7 O9   253.5
O8 P1 O7 O9   127.1
O7 P1 O9 H9O   132.6
O8 P1 C12 C14 302.2 300.0
O8 P1 C12 H17 184.4 177.6
C12 P1 O8 O7 230.3 233.2
C12 P1 O8 O9   107.3
O7 P1 O8 O9   234.1
O8 P1 O9 H9O   358.3
O4 C13 C6 H7 210.5 90.0
C6 C13 O4 O5 184.4 178.4
O5 C13 C6 H7 34.3 268.6
C6 C13 O5 O4 176.0 181.6
H18 C14 C12 H17 58.8 301.1
C12 C14 H18 H19 125.3 238.1
C12 C14 H18 H20 234.7 121.9
H19 C14 H18 H20 109.4 243.8
H19 C14 C12 H17 184.1 181.1
C12 C14 H19 H18 234.9 122.0
C12 C14 H19 H20 117.5 238.6
H18 C14 H19 H20 242.6 116.7
H20 C14 C12 H17 293.5 61.6
C12 C14 H20 H18 125.2 237.9
C12 C14 H20 H19 242.5 121.6
H18 C14 H20 H19 117.4 243.8
O9 P1 C12 C14   54.2
O9 P1 C12 H17   291.9
C12 P1 O9 O7   112.9
C12 P1 O9 O8   247.2
O7 P1 O9 O8   134.3