PDB Chemical Component RDR

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for RDR

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O15	C10	1.423	1.429
O15	H15	0.950	0.968
C10	C6	1.548	1.529
C10	H101	1.115	1.090
C10	H102	1.116	1.090
C6	N2	1.501	1.466
C6	H61	1.115	1.089
C6	H62	1.115	1.090
N2	C5	1.407	1.370
N2	C1	1.377	1.369
C5	C7	1.431	1.411
C5	C9	1.404	1.393
C7	C11	1.396	1.393
C7	C3	1.443	1.463
C11	N16	1.375	1.317
C11	H11	1.103	1.079
N16	C14	1.364	1.323
C14	C9	1.413	1.377
C14	H14	1.103	1.080
C9	H9	1.103	1.079
C3	C1	1.412	1.342
C3	H3	1.103	1.081
C1	C4	1.544	1.508
C4	N8	1.486	1.465
C4	H41	1.115	1.090
C4	H42	1.115	1.090
N8	C12	1.393	1.334
N8	C13	1.498	1.456
C12	O18	1.223	1.213
C12	C17	1.549	1.503
C17	N20	1.480	1.470
C17	H171	1.115	1.089
C17	H172	1.114	1.089
N20	C19	1.482	1.472
N20	S21	1.777	1.655
C19	C13	1.541	1.529
C19	H191	1.115	1.090
C19	H192	1.115	1.090
C13	H131	1.115	1.091
C13	H132	1.116	1.090
S21	O23	1.440	1.420
S21	O24	1.439	1.421
S21	C22	1.721	1.762
C22	C25	1.406	1.340
C22	S26	1.698	1.782
C25	C27	1.457	1.456
C25	H25	1.104	1.080
C27	C28	1.451	1.411
C27	C29	1.396	1.414
C28	S26	1.702	1.775
C28	C30	1.392	1.377
C30	C32	1.413	1.382
C30	H30	1.103	1.080
C32	CL33	1.718	1.736
C32	C31	1.415	1.389
C31	C29	1.416	1.360
C31	H31	1.103	1.079
C29	H29	1.103	1.080

Bond Angles for RDR

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C10	O15	H15	108.5	106.8
O15	C10	C6	108.5	109.4
O15	C10	H101	112.6	109.5
O15	C10	H102	112.6	109.5
C6	C10	H101	112.6	109.5
C6	C10	H102	112.6	109.5
C10	C6	N2	114.0	109.5
C10	C6	H61	110.5	109.5
C10	C6	H62	110.5	109.5
H101	C10	H102	97.9	109.5
N2	C6	H61	110.6	109.5
N2	C6	H62	110.6	109.4
C6	N2	C5	121.4	125.1
C6	N2	C1	129.2	125.0
H61	C6	H62	99.7	109.5
C5	N2	C1	109.4	109.9
N2	C5	C7	107.3	107.2
N2	C5	C9	133.3	134.6
N2	C1	C3	109.4	109.9
N2	C1	C4	122.1	125.0
C7	C5	C9	119.4	118.2
C5	C7	C11	118.7	119.1
C5	C7	C3	107.2	106.0
C5	C9	C14	118.6	118.8
C5	C9	H9	120.4	120.6
C11	C7	C3	134.1	134.9
C7	C11	N16	121.8	120.1
C7	C11	H11	119.9	119.9
C7	C3	C1	106.7	106.9
C7	C3	H3	127.5	126.6
N16	C11	H11	118.3	119.9
C11	N16	C14	119.5	122.2
N16	C14	C9	122.0	121.5
N16	C14	H14	117.2	119.2
C9	C14	H14	120.8	119.2
C14	C9	H9	121.0	120.6
C1	C3	H3	125.8	126.5
C3	C1	C4	128.5	125.0
C1	C4	N8	118.5	109.4
C1	C4	H41	109.0	109.5
C1	C4	H42	108.9	109.5
N8	C4	H41	109.0	109.5
N8	C4	H42	109.0	109.5
C4	N8	C12	119.2	117.7
C4	N8	C13	117.7	117.7
H41	C4	H42	101.1	109.5
C12	N8	C13	123.1	124.5
N8	C12	O18	123.6	118.4
N8	C12	C17	116.8	123.1
N8	C13	C19	114.3	110.8
N8	C13	H131	110.4	109.2
N8	C13	H132	110.4	109.2
O18	C12	C17	119.6	118.5
C12	C17	N20	116.1	108.9
C12	C17	H171	109.7	109.7
C12	C17	H172	109.8	109.4
N20	C17	H171	109.8	109.6
N20	C17	H172	109.8	109.6
C17	N20	C19	109.5	117.3
C17	N20	S21	113.5	121.3
H171	C17	H172	100.4	109.7
C19	N20	S21	114.0	121.4
N20	C19	C13	110.7	108.2
N20	C19	H191	111.8	109.7
N20	C19	H192	111.8	109.7
N20	S21	O23	105.1	105.8
N20	S21	O24	103.2	105.8
N20	S21	C22	109.9	107.4
C13	C19	H191	111.7	109.7
C13	C19	H192	111.7	109.8
C19	C13	H131	110.5	109.2
C19	C13	H132	110.5	109.2
H191	C19	H192	98.7	109.8
H131	C13	H132	99.8	109.1
O23	S21	O24	119.4	125.3
O23	S21	C22	109.7	105.8
O24	S21	C22	109.1	105.7
S21	C22	C25	120.5	128.2
S21	C22	S26	126.9	128.2
C25	C22	S26	112.6	103.5
C22	C25	C27	111.9	119.3
C22	C25	H25	122.5	120.3
C22	S26	C28	93.8	98.9
C27	C25	H25	125.6	120.3
C25	C27	C28	110.2	114.6
C25	C27	C29	129.7	128.8
C28	C27	C29	120.1	116.6
C27	C28	S26	111.5	103.6
C27	C28	C30	119.3	122.1
C27	C29	C31	120.7	120.8
C27	C29	H29	118.9	119.6
S26	C28	C30	129.2	134.3
C28	C30	C32	119.8	119.5
C28	C30	H30	119.3	120.3
C32	C30	H30	120.9	120.2
C30	C32	CL33	119.0	120.3
C30	C32	C31	121.6	119.5
CL33	C32	C31	119.4	120.2
C32	C31	C29	118.5	121.5
C32	C31	H31	120.7	119.3
C29	C31	H31	120.8	119.3
C31	C29	H29	120.4	119.6

Torsion Angles for RDR

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C6	C10	O15	H101	234.7	240.0
C6	C10	O15	H102	125.3	120.0
O15	C10	C6	N2	69.5	175.0
O15	C10	C6	H61	194.8	295.1
O15	C10	C6	H62	304.2	55.1
H101	C10	O15	H102	250.6	240.0
H15	O15	C10	C6	180.0	180.0
H15	O15	C10	H101	305.3	300.0
H15	O15	C10	H102	54.7	60.0
C6	C10	O15	H15	180.0	180.0
O15	C10	C6	H101	125.3	120.0
O15	C10	C6	H102	234.7	240.0
H101	C10	C6	H102	109.5	120.0
N2	C6	C10	H61	234.7	240.0
N2	C6	C10	H62	125.3	119.9
C10	C6	N2	C5	88.0	274.3
C10	C6	N2	C1	268.0	94.6
H61	C6	C10	H62	250.6	239.9
H101	C10	O15	H15	305.3	300.0
O15	C10	H101	C6	237.0	240.0
O15	C10	H101	H102	118.5	120.0
C6	C10	H101	H102	241.5	240.0
H101	C10	C6	N2	304.3	55.0
H101	C10	C6	H61	69.5	175.1
H101	C10	C6	H62	179.0	295.1
H102	C10	O15	H15	54.7	60.0
O15	C10	H102	C6	123.0	120.0
O15	C10	H102	H101	241.5	240.0
C6	C10	H102	H101	118.5	120.0
H102	C10	C6	N2	194.8	295.0
H102	C10	C6	H61	320.1	55.1
H102	C10	C6	H62	69.5	175.1
N2	C6	C10	H101	304.3	55.0
N2	C6	C10	H102	194.8	295.0
C10	C6	N2	H61	125.2	120.0
C10	C6	N2	H62	234.7	240.1
H61	C6	N2	H62	109.5	120.0
C5	N2	C6	C1	180.0	179.7
C6	N2	C5	C7	180.1	179.9
C6	N2	C5	C9	0.3	0.8
C6	N2	C1	C3	179.8	180.0
C6	N2	C1	C4	359.9	0.0
H61	C6	C10	H101	69.5	175.1
H61	C6	C10	H102	320.1	55.1
C10	C6	H61	N2	232.8	240.0
C10	C6	H61	H62	116.3	120.0
N2	C6	H61	H62	243.6	240.1
H61	C6	N2	C5	322.7	154.2
H61	C6	N2	C1	142.7	334.5
H62	C6	C10	H101	179.0	295.1
H62	C6	C10	H102	69.5	175.1
C10	C6	H62	N2	127.2	120.0
C10	C6	H62	H61	243.7	240.0
N2	C6	H62	H61	116.4	120.0
H62	C6	N2	C5	213.2	34.2
H62	C6	N2	C1	33.2	214.5
C5	N2	C6	H61	322.7	154.2
C5	N2	C6	H62	213.2	34.2
C6	N2	C5	C1	180.0	180.3
C5	N2	C1	C3	359.8	0.3
C5	N2	C1	C4	180.0	180.3
C7	C5	N2	C9	179.8	179.1
N2	C5	C7	C11	180.0	180.2
N2	C5	C7	C3	0.1	0.4
N2	C5	C9	C14	179.8	179.6
N2	C5	C9	H9	359.8	359.3
C1	N2	C6	H61	142.7	334.5
C1	N2	C6	H62	33.2	214.5
C6	N2	C1	C5	180.0	179.7
C1	N2	C5	C7	0.1	359.6
C1	N2	C5	C9	180.3	180.5
C7	C3	C1	N2	0.2	360.0
N2	C1	C3	H3	180.2	180.0
C3	C1	N2	C4	179.8	180.0
N2	C1	C4	N8	217.6	205.3
N2	C1	C4	H41	342.9	325.3
N2	C1	C4	H42	92.3	85.2
C7	C5	N2	C1	0.1	359.6
N2	C5	C7	C9	180.2	180.7
C7	C5	C9	C14	0.0	0.5
C7	C5	C9	H9	180.0	180.3
C11	C7	C5	C3	180.0	179.8
C5	C7	C11	N16	0.2	0.3
C5	C7	C11	H11	180.2	180.2
C5	C7	C3	C1	359.8	359.8
C5	C7	C3	H3	179.8	179.8
C9	C5	N2	C1	180.3	180.5
N2	C5	C9	C7	179.8	179.0
C9	C5	C7	C11	359.9	359.4
C9	C5	C7	C3	179.9	179.6
N16	C14	C9	C5	0.1	359.7
C5	C9	C14	H14	180.2	179.7
C14	C9	C5	H9	180.0	180.3
C11	C7	C5	C9	359.9	359.4
C5	C7	C11	C3	180.0	180.3
C11	C7	C3	C1	179.9	180.1
C11	C7	C3	H3	359.9	0.0
N16	C11	C7	H11	180.0	180.1
C7	C11	N16	C14	360.0	360.0
N2	C1	C3	C7	0.2	360.0
C3	C7	C5	C9	179.9	179.6
C5	C7	C3	C11	180.0	179.7
C3	C7	C11	N16	180.1	180.0
C3	C7	C11	H11	0.1	359.9
C1	C3	C7	H3	180.0	180.0
C7	C3	C1	C4	180.0	179.9
N16	C11	C7	C3	180.1	180.0
C7	C11	N16	H11	180.0	179.9
C11	N16	C14	C9	359.9	360.0
C11	N16	C14	H14	179.8	180.0
H11	C11	C7	C3	0.1	359.9
C7	C11	H11	N16	180.0	180.1
H11	C11	N16	C14	180.0	180.1
C5	C9	C14	N16	0.1	359.7
C14	N16	C11	H11	180.0	180.1
C9	C14	N16	H14	180.1	180.0
N16	C14	C9	H9	180.1	180.0
C5	C9	C14	H9	180.0	179.7
N16	C14	C9	H14	179.9	180.0
N16	C14	H14	C9	180.1	180.0
H14	C14	C9	H9	0.2	360.0
C5	C9	H9	C14	180.0	180.3
H9	C9	C14	H14	0.2	360.0
N2	C1	C3	C4	180.2	180.0
C7	C3	C1	H3	180.0	180.0
C3	C1	C4	N8	37.8	25.3
C3	C1	C4	H41	163.1	145.3
C3	C1	C4	H42	272.5	265.3
C7	C3	H3	C1	180.0	180.0
H3	C3	C1	C4	0.1	360.0
N2	C1	C4	C3	179.8	180.0
C4	C1	C3	H3	0.1	360.0
N8	C4	C1	H41	234.7	240.0
N8	C4	C1	H42	125.3	120.0
C1	C4	N8	C12	232.2	264.4
C1	C4	N8	C13	52.6	84.8
H41	C4	C1	H42	250.6	240.0
C1	C4	N8	H41	125.3	120.0
C1	C4	N8	H42	234.7	240.0
H41	C4	N8	H42	109.4	120.0
C12	N8	C4	C13	179.6	179.6
C4	N8	C12	O18	0.2	4.7
C4	N8	C12	C17	179.9	184.1
C4	N8	C13	C19	191.9	158.0
C4	N8	C13	H131	317.2	278.4
C4	N8	C13	H132	66.6	37.6
C1	C4	H41	N8	229.3	240.0
C1	C4	H41	H42	114.6	120.0
N8	C4	H41	H42	245.3	239.9
H41	C4	N8	C12	106.9	144.4
H41	C4	N8	C13	287.3	324.8
C1	C4	H42	N8	130.7	120.0
C1	C4	H42	H41	245.3	240.0
N8	C4	H42	H41	114.7	120.1
H42	C4	N8	C12	357.5	24.3
H42	C4	N8	C13	177.8	204.8
C12	N8	C4	H41	106.9	144.4
C12	N8	C4	H42	357.5	24.3
C4	N8	C12	C13	180.4	180.5
C12	N8	C13	C19	12.3	338.5
C12	N8	C13	H131	137.6	98.9
C12	N8	C13	H132	247.0	218.1
O18	C12	N8	C17	180.3	180.6
N8	C12	C17	N20	20.2	347.8
N8	C12	C17	H171	145.4	227.9
N8	C12	C17	H172	254.9	107.6
C13	N8	C4	H41	287.3	324.8
C13	N8	C4	H42	177.8	204.8
C4	N8	C13	C12	179.6	179.5
C13	N8	C12	O18	179.8	184.2
C13	N8	C12	C17	359.5	3.6
N20	C19	C13	N8	317.0	46.7
N8	C13	C19	H191	191.7	287.0
N8	C13	C19	H192	82.2	166.3
C19	C13	N8	H131	234.7	239.6
C19	C13	N8	H132	125.3	120.4
H131	C13	N8	H132	250.6	240.8
O18	C12	N8	C13	179.8	184.2
N8	C12	O18	C17	179.7	179.5
O18	C12	C17	N20	199.9	167.3
O18	C12	C17	H171	325.1	47.3
O18	C12	C17	H172	74.6	287.0
C17	C12	N8	C13	359.5	3.6
N8	C12	C17	O18	180.3	180.6
N20	C17	C12	H171	234.8	119.9
N20	C17	C12	H172	125.3	240.3
C12	C17	N20	C19	308.9	42.5
C12	C17	N20	S21	180.3	222.5
H171	C17	C12	H172	250.5	120.3
C12	C17	N20	H171	125.2	240.0
C12	C17	N20	H172	234.7	119.6
H171	C17	N20	H172	109.5	239.6
C19	N20	C17	S21	128.6	180.1
C17	N20	C19	C13	61.9	298.5
C17	N20	C19	H191	187.1	58.2
C17	N20	C19	H192	296.6	178.8
C17	N20	S21	O23	314.1	22.7
C17	N20	S21	O24	188.3	157.5
C17	N20	S21	C22	72.0	270.0
C12	C17	H171	N20	231.2	119.5
C12	C17	H171	H172	115.6	239.8
N20	C17	H171	H172	244.4	120.3
H171	C17	N20	C19	183.7	162.6
H171	C17	N20	S21	55.1	342.5
C12	C17	H172	N20	128.8	240.7
C12	C17	H172	H171	244.4	120.4
N20	C17	H172	H171	115.6	239.7
H172	C17	N20	C19	74.1	282.9
H172	C17	N20	S21	305.5	102.8
N8	C13	C19	N20	317.0	46.7
C19	N20	C17	H171	183.7	162.6
C19	N20	C17	H172	74.1	282.9
C17	N20	C19	S21	231.6	179.9
C19	N20	S21	O23	187.8	202.6
C19	N20	S21	O24	62.0	337.4
C19	N20	S21	C22	305.8	90.0
C13	C19	N20	H191	234.8	240.3
C13	C19	N20	H192	125.2	119.7
N20	C19	C13	H131	191.7	286.4
N20	C19	C13	H132	82.2	167.1
H191	C19	N20	H192	250.4	239.4
S21	N20	C17	H171	55.1	342.5
S21	N20	C17	H172	305.5	102.8
C17	N20	S21	C19	126.3	180.1
S21	N20	C19	C13	190.2	118.6
S21	N20	C19	H191	315.4	238.2
S21	N20	C19	H192	65.0	358.9
O23	S21	N20	O24	125.8	225.2
O23	S21	N20	C22	242.0	112.7
O24	S21	N20	C22	116.3	247.4
N20	S21	C22	C25	273.6	89.7
N20	S21	C22	S26	92.8	270.0
N8	C13	C19	H131	125.3	120.3
N8	C13	C19	H132	234.8	239.6
C13	C19	N20	S21	190.2	118.6
N20	C19	C13	H191	125.2	119.7
N20	C19	C13	H192	234.7	240.3
H191	C19	C13	H192	109.5	120.7
H131	C13	C19	H132	109.5	119.3
H191	C19	N20	S21	315.4	238.2
N20	C19	H191	C13	235.3	241.3
N20	C19	H191	H192	117.7	120.6
C13	C19	H191	H192	242.4	239.3
H191	C19	C13	H131	66.5	166.7
H191	C19	C13	H132	316.9	47.4
H192	C19	N20	S21	65.0	358.9
N20	C19	H192	C13	124.7	118.7
N20	C19	H192	H191	242.3	239.4
C13	C19	H192	H191	117.6	120.7
H192	C19	C13	H131	317.0	46.0
H192	C19	C13	H132	207.4	286.7
N8	C13	H131	C19	232.5	238.7
N8	C13	H131	H132	116.2	119.3
H131	C13	C19	H191	66.5	166.7
H131	C13	C19	H192	317.0	46.0
C19	C13	H131	H132	243.7	240.6
N8	C13	H132	C19	127.4	121.4
N8	C13	H132	H131	243.8	240.7
H132	C13	C19	H191	316.9	47.4
H132	C13	C19	H192	207.4	286.7
C19	C13	H132	H131	116.3	119.4
N20	S21	O23	O24	245.0	123.1
N20	S21	O23	C22	118.1	246.2
O24	S21	O23	C22	233.0	123.1
O23	S21	C22	C25	28.7	337.0
O23	S21	C22	S26	207.8	157.3
N20	S21	O24	O23	116.0	236.9
N20	S21	O24	C22	243.2	113.8
O23	S21	O24	C22	127.2	236.9
O24	S21	C22	C25	161.2	202.3
O24	S21	C22	S26	340.3	22.6
N20	S21	C22	O23	245.0	112.7
N20	S21	C22	O24	112.5	247.4
O23	S21	C22	O24	227.5	134.7
C25	C22	S21	S26	180.9	179.7
S21	C22	C25	C27	178.8	179.9
S21	C22	C25	H25	358.9	0.1
S21	C22	S26	C28	181.3	179.9
S21	C22	C25	S26	179.2	180.3
C25	C22	S26	C28	0.5	0.2
C27	C25	C22	H25	180.0	179.8
C22	C25	C27	C28	0.0	0.5
C22	C25	C27	C29	180.7	180.2
S21	C22	S26	C25	180.8	179.7
S26	C22	C25	C27	359.6	359.6
S26	C22	C25	H25	179.6	179.8
C27	C28	S26	C22	359.5	0.0
C22	S26	C28	C30	179.2	180.0
C27	C25	C22	S26	359.6	359.6
C22	C25	C27	H25	180.0	180.2
C28	C27	C25	C29	179.3	180.3
C25	C27	C28	S26	0.3	359.7
C25	C27	C28	C30	180.7	179.8
C25	C27	C29	C31	179.2	180.3
C25	C27	C29	H29	359.2	0.4
H25	C25	C22	S26	179.6	179.8
C22	C25	H25	C27	180.0	179.8
H25	C25	C27	C28	180.0	180.2
H25	C25	C27	C29	0.7	359.9
C22	S26	C28	C27	359.5	0.0
C28	C27	C25	H25	180.0	180.2
C25	C27	C28	C29	180.6	179.7
C28	C27	C29	C31	360.0	0.0
C28	C27	C29	H29	180.0	180.0
S26	C28	C27	C30	179.7	180.0
C27	C28	C30	C32	0.3	360.0
C27	C28	C30	H30	180.3	180.0
C29	C27	C25	H25	0.7	359.9
C25	C27	C29	C28	179.2	180.3
C29	C27	C28	S26	179.7	180.0
C29	C27	C28	C30	0.0	0.0
C32	C31	C29	C27	359.7	359.9
C27	C29	C31	H31	179.8	180.0
C31	C29	C27	H29	179.9	180.0
S26	C28	C27	C29	179.7	180.0
C27	C28	S26	C30	180.4	180.0
S26	C28	C30	C32	180.7	180.0
S26	C28	C30	H30	0.7	0.0
C30	C28	C27	C29	0.0	0.0
C27	C28	C30	S26	179.6	180.0
C32	C30	C28	H30	180.0	180.0
C28	C30	C32	CL33	179.1	180.1
C28	C30	C32	C31	359.4	360.0
C28	C30	C32	H30	180.0	180.0
CL33	C32	C30	C31	179.7	180.1
C30	C32	C31	C29	0.6	0.1
C30	C32	C31	H31	180.6	180.0
C28	C30	H30	C32	180.0	180.0
H30	C30	C32	CL33	359.1	0.1
H30	C30	C32	C31	179.4	180.0
CL33	C32	C30	H30	359.1	0.1
C30	C32	CL33	C31	180.3	179.9
CL33	C32	C31	C29	180.9	180.0
CL33	C32	C31	H31	0.9	359.9
C27	C29	C31	C32	359.7	359.9
C31	C32	C30	H30	179.4	180.0
C30	C32	C31	CL33	179.7	180.1
C29	C31	C32	H31	180.0	180.0
C32	C31	C29	H29	179.7	179.9
C27	C29	C31	H29	180.1	180.0
C32	C31	C29	H31	180.0	180.0
C32	C31	H31	C29	180.0	180.0
H31	C31	C29	H29	359.7	359.9
C27	C29	H29	C31	179.9	180.0
H29	C29	C31	H31	359.7	359.9