PDB Chemical Component RDL

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for RDL

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O15	C15	1.419	1.428
O15	H15O	0.951	0.966
C15	C14	1.538	1.529
C15	H151	1.115	1.090
C15	H152	1.115	1.090
C14	O14	1.438	1.428
C14	C13	1.520	1.530
C14	H141	1.115	1.090
O14	H14O	0.949	0.967
C13	O13	1.438	1.429
C13	C12	1.529	1.529
C13	H131	1.115	1.090
O13	H13O	0.950	0.967
C12	O12	1.419	1.428
C12	C11	1.487	1.530
C12	H121	1.115	1.089
O12	H12O	0.949	0.966
C11	N9	1.450	1.464
C11	H111	1.115	1.090
C11	H112	1.115	1.089
N9	C8	1.326	1.348
N9	C10	1.340	1.370
C8	O8	1.250	1.216
C8	C7	1.476	1.490
C7	O7	1.263	1.215
C7	N6	1.333	1.351
C10	C5	1.449	1.378
C10	N1	1.347	1.378
C5	N6	1.356	1.395
C5	C4	1.441	1.414
N6	HN6	1.020	0.969
C4	O4	1.261	1.219
C4	N3	1.344	1.348
N3	C2	1.360	1.344
N3	HN3	1.019	0.971
C2	N1	1.319	1.345
C2	O2	1.243	1.216
N1	HN1	1.020	0.970

Bond Angles for RDL

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C15	O15	H15O	110.3	106.9
O15	C15	C14	110.2	109.5
O15	C15	H151	111.9	109.4
O15	C15	H152	111.9	109.5
C14	C15	H151	112.0	109.5
C14	C15	H152	112.0	109.5
C15	C14	O14	109.8	109.5
C15	C14	C13	111.8	109.6
C15	C14	H141	107.1	109.5
H151	C15	H152	98.4	109.5
O14	C14	C13	107.9	109.5
O14	C14	H141	111.1	109.5
C14	O14	H14O	109.9	106.8
C13	C14	H141	109.1	109.4
C14	C13	O13	108.6	109.5
C14	C13	C12	113.7	109.5
C14	C13	H131	107.7	109.4
O13	C13	C12	110.9	109.5
O13	C13	H131	110.7	109.4
C13	O13	H13O	108.6	106.8
C12	C13	H131	105.3	109.5
C13	C12	O12	112.0	109.4
C13	C12	C11	111.3	109.5
C13	C12	H121	105.1	109.5
O12	C12	C11	105.1	109.5
O12	C12	H121	111.3	109.5
C12	O12	H12O	112.0	106.8
C11	C12	H121	112.1	109.4
C12	C11	N9	118.5	109.5
C12	C11	H111	108.9	109.4
C12	C11	H112	108.9	109.5
N9	C11	H111	109.0	109.5
N9	C11	H112	109.0	109.5
C11	N9	C8	117.9	119.9
C11	N9	C10	119.8	119.8
H111	C11	H112	101.1	109.5
C8	N9	C10	122.0	120.3
N9	C8	O8	121.0	120.4
N9	C8	C7	119.7	119.2
N9	C10	C5	118.1	121.0
N9	C10	N1	123.1	119.9
O8	C8	C7	119.3	120.4
C8	C7	O7	118.9	120.6
C8	C7	N6	119.1	118.9
O7	C7	N6	122.0	120.5
C7	N6	C5	119.9	119.7
C7	N6	HN6	119.2	120.2
C5	C10	N1	118.8	119.1
C10	C5	N6	121.1	120.9
C10	C5	C4	117.3	119.1
C10	N1	C2	122.1	120.4
C10	N1	HN1	120.0	119.8
N6	C5	C4	121.6	120.1
C5	N6	HN6	120.9	120.1
C5	C4	O4	119.7	120.4
C5	C4	N3	118.4	119.3
O4	C4	N3	121.9	120.3
C4	N3	C2	121.8	120.7
C4	N3	HN3	118.5	119.6
C2	N3	HN3	119.7	119.6
N3	C2	N1	121.6	121.4
N3	C2	O2	118.9	119.3
N1	C2	O2	119.6	119.3
C2	N1	HN1	117.9	119.8

Torsion Angles for RDL

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C14	C15	O15	H151	234.7	240.0
C14	C15	O15	H152	125.3	120.1
O15	C15	C14	O14	297.6	59.9
O15	C15	C14	C13	57.3	180.0
O15	C15	C14	H141	176.8	299.9
H151	C15	O15	H152	250.6	240.1
H15O	O15	C15	C14	180.0	180.0
H15O	O15	C15	H151	305.3	300.0
H15O	O15	C15	H152	54.7	60.0
C14	C15	O15	H15O	180.0	180.0
O15	C15	C14	H151	125.3	120.0
O15	C15	C14	H152	234.8	239.9
H151	C15	C14	H152	109.5	120.0
O14	C14	C15	C13	240.3	240.0
O14	C14	C15	H141	120.8	120.0
C15	C14	O14	H14O	180.0	60.0
C13	C14	C15	H141	240.5	240.0
C15	C14	C13	O13	60.8	59.9
C15	C14	C13	C12	184.8	180.0
C15	C14	C13	H131	300.9	300.0
H151	C15	O15	H15O	305.3	300.0
O15	C15	H151	C14	235.7	239.9
O15	C15	H151	H152	117.8	120.0
C14	C15	H151	H152	242.1	240.0
H151	C15	C14	O14	172.3	300.0
H151	C15	C14	C13	292.1	60.0
H151	C15	C14	H141	51.5	180.0
H152	C15	O15	H15O	54.7	60.0
O15	C15	H152	C14	124.3	120.1
O15	C15	H152	H151	242.2	240.1
C14	C15	H152	H151	117.9	120.0
H152	C15	C14	O14	62.8	180.0
H152	C15	C14	C13	182.6	300.0
H152	C15	C14	H141	302.0	60.0
O14	C14	C15	H151	172.3	300.0
O14	C14	C15	H152	62.8	180.0
C15	C14	O14	C13	122.1	120.1
C15	C14	O14	H141	241.7	240.0
C13	C14	O14	H141	119.6	119.9
O14	C14	C13	O13	181.7	180.0
O14	C14	C13	C12	305.7	300.0
O14	C14	C13	H131	61.8	60.1
C13	C14	C15	H151	292.1	60.0
C13	C14	C15	H152	182.6	300.0
C15	C14	C13	O14	239.1	240.0
C15	C14	C13	H141	118.3	120.0
O14	C14	C13	H141	239.2	240.0
C13	C14	O14	H14O	57.9	299.9
O13	C13	C14	C12	236.0	240.0
O13	C13	C14	H131	119.9	119.9
C14	C13	O13	H13O	180.0	60.0
C12	C13	C14	H131	243.8	239.9
C14	C13	C12	O12	175.0	60.1
C14	C13	C12	C11	292.3	180.0
C14	C13	C12	H121	53.9	300.0
H141	C14	C15	H151	51.5	180.0
H141	C14	C15	H152	302.0	60.0
C15	C14	H141	O14	120.0	120.0
C15	C14	H141	C13	238.8	239.9
O14	C14	H141	C13	118.8	119.9
H141	C14	O14	H14O	298.3	180.0
H141	C14	C13	O13	302.5	300.0
H141	C14	C13	C12	66.5	60.0
H141	C14	C13	H131	182.7	180.0
H14O	O14	C14	C13	57.9	299.9
H14O	O14	C14	H141	298.3	180.0
O13	C13	C14	H141	302.5	300.0
C14	C13	O13	C12	125.6	120.0
C14	C13	O13	H131	242.0	240.1
C12	C13	O13	H131	116.4	120.0
O13	C13	C12	O12	297.6	180.1
O13	C13	C12	C11	55.0	300.0
O13	C13	C12	H121	176.6	60.0
C12	C13	C14	H141	66.5	60.0
C14	C13	C12	O13	237.3	240.0
C14	C13	C12	H131	117.6	120.0
O13	C13	C12	H131	240.3	240.0
C12	C13	O13	H13O	54.4	300.0
O12	C12	C13	C11	242.6	240.0
O12	C12	C13	H121	121.0	120.1
C13	C12	O12	H12O	180.0	59.9
C11	C12	C13	H121	238.4	240.1
C13	C12	C11	N9	164.4	180.1
C13	C12	C11	H111	289.6	300.0
C13	C12	C11	H112	39.1	60.0
H131	C13	C14	H141	182.7	180.0
C14	C13	H131	O13	118.5	119.9
C14	C13	H131	C12	238.4	239.9
O13	C13	H131	C12	119.9	120.0
H131	C13	O13	H13O	298.0	180.0
H131	C13	C12	O12	57.4	300.0
H131	C13	C12	C11	174.7	60.0
H131	C13	C12	H121	296.3	180.0
H13O	O13	C13	C12	54.4	300.0
H13O	O13	C13	H131	298.0	180.0
O12	C12	C13	H131	57.4	300.0
C13	C12	O12	C11	121.0	120.0
C13	C12	O12	H121	242.6	239.9
C11	C12	O12	H121	121.6	119.9
O12	C12	C11	N9	285.9	300.0
O12	C12	C11	H111	51.1	60.0
O12	C12	C11	H112	160.6	180.0
C11	C12	C13	H131	174.7	60.0
C13	C12	C11	O12	238.5	240.0
C13	C12	C11	H121	117.4	120.0
O12	C12	C11	H121	238.9	240.0
C11	C12	O12	H12O	59.0	300.0
N9	C11	C12	H111	234.7	240.1
N9	C11	C12	H112	125.3	120.1
C12	C11	N9	C8	263.7	90.0
C12	C11	N9	C10	89.0	269.6
H111	C11	C12	H112	250.6	240.0
H121	C12	C13	H131	296.3	180.0
C13	C12	H121	O12	121.5	120.0
C13	C12	H121	C11	239.0	240.0
O12	C12	H121	C11	117.4	120.0
H121	C12	O12	H12O	297.4	180.0
H121	C12	C11	N9	46.9	60.1
H121	C12	C11	H111	172.2	180.0
H121	C12	C11	H112	281.6	300.0
H12O	O12	C12	C11	59.0	300.0
H12O	O12	C12	H121	297.4	180.0
N9	C11	C12	H121	46.9	60.1
C12	C11	N9	H111	125.2	119.9
C12	C11	N9	H112	234.7	239.9
H111	C11	N9	H112	109.5	120.0
C8	N9	C11	C10	174.6	180.3
C11	N9	C8	O8	5.4	360.0
C11	N9	C8	C7	186.6	180.0
C11	N9	C10	C5	173.4	179.8
C11	N9	C10	N1	352.6	0.3
H111	C11	C12	H121	172.2	180.0
C12	C11	H111	N9	229.3	240.1
C12	C11	H111	H112	114.6	120.0
N9	C11	H111	H112	245.3	240.0
H111	C11	N9	C8	138.4	330.1
H111	C11	N9	C10	323.8	149.7
H112	C11	C12	H121	281.6	300.0
C12	C11	H112	N9	130.7	120.1
C12	C11	H112	H111	245.4	240.1
N9	C11	H112	H111	114.7	120.0
H112	C11	N9	C8	28.9	210.1
H112	C11	N9	C10	214.3	29.7
C8	N9	C11	H111	138.4	330.1
C8	N9	C11	H112	28.9	210.1
C11	N9	C8	C10	185.5	179.7
C8	N9	C10	C5	359.0	359.4
C8	N9	C10	N1	178.2	180.0
O8	C8	N9	C7	178.8	180.0
N9	C8	C7	O7	178.7	180.0
N9	C8	C7	N6	358.4	0.0
C10	N9	C11	H111	323.8	149.7
C10	N9	C11	H112	214.3	29.7
C11	N9	C10	C8	174.4	180.3
C10	N9	C8	O8	179.9	180.3
C10	N9	C8	C7	1.1	0.3
C5	C10	N9	N1	180.8	179.4
N9	C10	C5	N6	1.3	0.6
N9	C10	C5	C4	181.2	180.3
N9	C10	N1	C2	179.2	179.5
N9	C10	N1	HN1	359.2	359.4
O8	C8	N9	C10	179.9	180.3
N9	C8	O8	C7	181.2	180.0
O8	C8	C7	O7	359.9	360.0
O8	C8	C7	N6	179.6	180.0
C7	C8	N9	C10	1.1	0.3
N9	C8	C7	O8	178.8	180.0
O7	C7	C8	N6	180.2	180.0
C8	C7	N6	C5	1.9	360.0
C8	C7	N6	HN6	181.9	180.0
C8	C7	O7	N6	179.8	180.0
O7	C7	N6	C5	181.6	180.0
O7	C7	N6	HN6	1.7	360.0
C8	C7	N6	O7	180.2	180.0
C10	C5	N6	C7	358.2	359.7
C7	N6	C5	C4	178.3	180.0
C5	N6	C7	HN6	180.0	180.0
N9	C10	C5	N1	179.2	180.6
C7	N6	C5	C10	358.2	359.7
C5	C10	N1	C2	358.3	0.0
C5	C10	N1	HN1	178.3	180.0
N6	C5	C10	C4	180.1	180.3
C10	C5	N6	HN6	178.2	179.8
C10	C5	C4	O4	180.6	179.9
C10	C5	C4	N3	359.5	0.6
N9	C10	N1	C5	180.8	179.4
N1	C10	C5	N6	182.1	180.0
N1	C10	C5	C4	2.0	359.7
N3	C2	N1	C10	359.8	359.9
C10	N1	C2	O2	179.8	180.0
C2	N1	C10	HN1	180.0	180.1
C7	N6	C5	HN6	180.0	180.0
N6	C5	C10	N1	182.1	180.0
C10	C5	N6	C4	179.9	179.7
N6	C5	C4	O4	0.5	359.6
N6	C5	C4	N3	179.4	180.3
C4	C5	C10	N1	2.0	359.7
C10	C5	C4	N6	180.1	180.3
C4	C5	N6	HN6	358.3	0.0
O4	C4	C5	N3	181.1	179.3
C5	C4	N3	C2	358.7	359.3
C5	C4	N3	HN3	178.7	179.7
C7	N6	HN6	C5	180.0	180.0
HN6	N6	C5	C4	358.3	0.0
C5	C4	O4	N3	178.8	180.7
O4	C4	N3	C2	177.5	180.0
O4	C4	N3	HN3	357.5	0.4
C5	C4	N3	O4	181.1	179.3
C2	N3	C4	HN3	180.0	179.7
C4	N3	C2	N1	1.8	0.4
C4	N3	C2	O2	181.7	180.3
C10	N1	C2	N3	359.8	359.9
C4	N3	C2	HN3	180.0	180.3
N1	C2	N3	O2	180.1	180.1
N3	C2	N1	HN1	179.8	180.0
C4	N3	HN3	C2	180.0	179.7
HN3	N3	C2	N1	181.8	180.0
HN3	N3	C2	O2	1.7	360.0
C10	N1	C2	HN1	180.0	179.9
N1	C2	N3	HN3	181.8	180.0
N3	C2	N1	O2	179.9	179.9
O2	C2	N3	HN3	1.7	360.0
N3	C2	O2	N1	180.1	180.1
O2	C2	N1	HN1	359.9	0.1
C10	N1	HN1	C2	180.0	180.1
HN1	N1	C2	O2	359.9	0.1