PDB Chemical Component RDG

Ideal Model

Chemical Description

Name 2'-deoxy-N-(furan-2-ylmethyl)guanosine 5'-(dihydrogen phosphate)
Synonyms N2-furfuryl-deoxyguanosine-5'-monophosphate
Formula C15 H18 N5 O8 P
Formal charge 0
Molecular weight 427.306 g/mol
Component type DNA LINKING
Nonstandard Parent Id DG

Chemical features

Atom count 47
Chiral atom count 3
Chiral atoms C4' C3' C1'
Observed leaving atoms OP3 HO3'
Bond count 50
Aromatic bond count 10

Chemical Identifiers

Systematic name (ACDLabs) 2'-deoxy-N-(furan-2-ylmethyl)guanosine 5'-(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) [(2R,3S,5R)-5-[2-(furan-2-ylmethylamino)-6-oxidanylidene-1H-purin-9-yl]-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) O[C@H]1C[C@@H](O[C@@H]1CO[P](O)(O)=O)n2cnc3C(=O)NC(=Nc23)NCc4occc4
SMILES (CACTVS) O[CH]1C[CH](O[CH]1CO[P](O)(O)=O)n2cnc3C(=O)NC(=Nc23)NCc4occc4
Stereo SMILES (OpenEye) c1cc(oc1)CNC2=Nc3c(ncn3[C@H]4C[C@@H]([C@H](O4)COP(=O)(O)O)O)C(=O)N2
InChI descriptor InChI=1S/C15H18N5O8P/c21-9-4-11(28-10(9)6-27-29(23,24)25)20-7-17-12-13(20)18-15(19-14(12)22)16-5-8-2-1-3-26-8/h1-3,7,9-11,21H,4-6H2,(H2,23,24,25)(H2,16,18,19,22)/t9-,10+,11+/m0/s1
InChIKey descriptor DBFJIGOYTNZKTK-HBNTYKKESA-N

Status Information

Last modified 2020-06-17
Created 2013-04-22
Release status REL
Model PDB code 4K2Q
Processing site PDBJ