PDB Chemical Component RC8
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for RC8
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N2 |
C2 |
1.339 |
1.385 |
N3 |
C2 |
1.347 |
1.323 |
C2 |
N1 |
1.351 |
1.327 |
N3 |
C4 |
1.350 |
1.330 |
N9 |
C4 |
1.323 |
1.371 |
C4 |
C5 |
1.458 |
1.404 |
C5 |
C6 |
1.481 |
1.406 |
C5 |
N7 |
1.343 |
1.356 |
N1 |
C6 |
1.349 |
1.328 |
C6 |
N6 |
1.342 |
1.383 |
N9 |
C8 |
1.337 |
1.365 |
C8 |
N7 |
1.365 |
1.301 |
C8 |
H8 |
1.080 |
1.079 |
C10 |
C9 |
1.577 |
1.531 |
C9 |
N9 |
1.477 |
1.465 |
C9 |
C11 |
1.583 |
1.530 |
C9 |
H9 |
1.100 |
1.090 |
C10 |
H10 |
1.100 |
1.090 |
C10 |
H10A |
1.100 |
1.089 |
C10 |
H10B |
1.100 |
1.090 |
C13 |
C12 |
1.536 |
1.530 |
C12 |
C15 |
1.529 |
1.530 |
C12 |
N2 |
1.450 |
1.466 |
C12 |
H12 |
1.100 |
1.090 |
C14 |
C13 |
1.512 |
1.530 |
C14 |
H14 |
1.100 |
1.090 |
C14 |
H14A |
1.100 |
1.090 |
C14 |
H14B |
1.099 |
1.091 |
C15 |
O1 |
1.440 |
1.428 |
O1 |
HO1 |
0.950 |
0.967 |
C15 |
H15 |
1.100 |
1.090 |
C15 |
H15A |
1.100 |
1.090 |
C13 |
H13 |
1.100 |
1.091 |
C13 |
H13A |
1.100 |
1.090 |
N2 |
HN2 |
1.000 |
0.970 |
C11 |
H11 |
1.100 |
1.090 |
C11 |
H11A |
1.100 |
1.089 |
C11 |
H11B |
1.100 |
1.090 |
CA' |
N6 |
1.450 |
1.464 |
N6 |
HN6 |
1.000 |
0.971 |
CA' |
C1' |
1.506 |
1.507 |
CA' |
HA' |
1.100 |
1.089 |
CA' |
HA'A |
1.100 |
1.090 |
C6' |
C1' |
1.391 |
1.384 |
C1' |
C2' |
1.395 |
1.383 |
C6' |
C5' |
1.391 |
1.380 |
C6' |
H6' |
1.080 |
1.079 |
C5' |
C4' |
1.399 |
1.393 |
C5' |
H5' |
1.080 |
1.080 |
C4' |
C3' |
1.392 |
1.394 |
C4' |
C1B |
1.495 |
1.484 |
C2' |
C3' |
1.384 |
1.380 |
C3' |
H3' |
1.080 |
1.080 |
C2' |
H2' |
1.080 |
1.079 |
C2B |
C1B |
1.402 |
1.393 |
C1B |
N1B |
1.353 |
1.327 |
N1B |
C5B |
1.341 |
1.317 |
C4B |
C5B |
1.394 |
1.383 |
C5B |
H5B |
1.080 |
1.079 |
C3B |
C4B |
1.395 |
1.387 |
C4B |
H4B |
1.079 |
1.081 |
C2B |
C3B |
1.391 |
1.384 |
C3B |
H3B |
1.080 |
1.080 |
C2B |
H2B |
1.080 |
1.081 |
Bond Angles for RC8
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
N2 |
C2 |
N1 |
119.1 |
118.9 |
C2 |
N1 |
C6 |
122.0 |
121.1 |
C4 |
C5 |
C6 |
116.0 |
118.3 |
C4 |
C5 |
N7 |
105.6 |
107.2 |
C6 |
C5 |
N7 |
138.4 |
134.5 |
C5 |
C6 |
N6 |
122.3 |
120.7 |
C5 |
N7 |
C8 |
108.5 |
109.4 |
N1 |
C6 |
N6 |
119.2 |
120.7 |
C6 |
N6 |
HN6 |
106.7 |
120.0 |
N9 |
C8 |
N7 |
109.5 |
110.0 |
N9 |
C8 |
H8 |
125.3 |
125.0 |
N7 |
C8 |
H8 |
125.3 |
125.0 |
C10 |
C9 |
N9 |
114.6 |
109.5 |
C10 |
C9 |
C11 |
112.7 |
109.4 |
C10 |
C9 |
H9 |
106.1 |
109.5 |
N9 |
C9 |
C11 |
116.3 |
109.5 |
N9 |
C9 |
H9 |
101.4 |
109.5 |
C11 |
C9 |
H9 |
103.8 |
109.5 |
C9 |
C11 |
H11 |
109.5 |
109.5 |
C9 |
C11 |
H11A |
109.5 |
109.4 |
C9 |
C11 |
H11B |
109.5 |
109.5 |
H10 |
C10 |
H10A |
109.5 |
109.5 |
H10 |
C10 |
H10B |
109.4 |
109.4 |
H10A |
C10 |
H10B |
109.5 |
109.5 |
C13 |
C12 |
N2 |
109.9 |
109.4 |
C13 |
C12 |
H12 |
107.5 |
109.5 |
C15 |
C12 |
N2 |
108.6 |
109.5 |
C15 |
C12 |
H12 |
108.8 |
109.5 |
C12 |
C15 |
O1 |
109.4 |
109.5 |
C12 |
C15 |
H15 |
109.5 |
109.5 |
C12 |
C15 |
H15A |
109.5 |
109.5 |
N2 |
C12 |
H12 |
110.5 |
109.4 |
C12 |
N2 |
HN2 |
106.5 |
120.0 |
C13 |
C14 |
H14 |
109.5 |
109.5 |
C13 |
C14 |
H14A |
109.4 |
109.4 |
C13 |
C14 |
H14B |
109.5 |
109.4 |
C14 |
C13 |
H13 |
108.7 |
109.5 |
C14 |
C13 |
H13A |
108.1 |
109.5 |
H14 |
C14 |
H14A |
109.5 |
109.5 |
H14 |
C14 |
H14B |
109.4 |
109.5 |
H14A |
C14 |
H14B |
109.5 |
109.4 |
C15 |
O1 |
HO1 |
109.5 |
114.0 |
H15 |
C15 |
H15A |
109.4 |
109.5 |
H13 |
C13 |
H13A |
111.4 |
109.5 |
H11 |
C11 |
H11A |
109.5 |
109.5 |
H11 |
C11 |
H11B |
109.4 |
109.5 |
H11A |
C11 |
H11B |
109.5 |
109.5 |
CA' |
N6 |
HN6 |
106.7 |
120.0 |
C1' |
CA' |
HA' |
109.9 |
109.5 |
C1' |
CA' |
HA'A |
110.2 |
109.4 |
CA' |
C1' |
C2' |
119.1 |
119.9 |
HA' |
CA' |
HA'A |
108.4 |
109.4 |
C6' |
C1' |
C2' |
120.9 |
120.3 |
C1' |
C2' |
C3' |
120.0 |
120.1 |
C1' |
C2' |
H2' |
120.0 |
120.0 |
C5' |
C6' |
H6' |
120.5 |
120.0 |
C6' |
C5' |
C4' |
120.3 |
119.9 |
C6' |
C5' |
H5' |
119.8 |
120.1 |
C4' |
C5' |
H5' |
119.9 |
120.0 |
C5' |
C4' |
C3' |
120.1 |
119.7 |
C5' |
C4' |
C1B |
120.9 |
120.1 |
C3' |
C4' |
C1B |
119.0 |
120.1 |
C4' |
C3' |
H3' |
120.2 |
120.0 |
C4' |
C1B |
N1B |
119.3 |
119.7 |
C2' |
C3' |
H3' |
120.1 |
120.1 |
C1B |
N1B |
C5B |
121.5 |
121.6 |
N1B |
C5B |
H5B |
119.9 |
119.6 |
C4B |
C5B |
H5B |
120.0 |
119.5 |
C3B |
C4B |
H4B |
120.1 |
120.3 |
C2B |
C3B |
H3B |
120.4 |
120.8 |
Torsion Angles for RC8
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
N2 |
C2 |
N1 |
C6 |
180.0 |
180.0 |
C2 |
N1 |
C6 |
N6 |
180.0 |
179.9 |
N9 |
C4 |
C5 |
N7 |
359.9 |
360.0 |
C6 |
C5 |
C4 |
N7 |
179.7 |
180.0 |
C4 |
C5 |
C6 |
N6 |
180.2 |
180.0 |
C4 |
C5 |
N7 |
C8 |
0.1 |
360.0 |
C2 |
N1 |
C6 |
C5 |
0.2 |
359.5 |
C4 |
C5 |
C6 |
N7 |
180.4 |
180.0 |
C6 |
C5 |
N7 |
C8 |
180.5 |
180.0 |
N1 |
C6 |
C5 |
N6 |
179.8 |
180.5 |
C5 |
C6 |
N6 |
HN6 |
280.9 |
360.0 |
C4 |
C5 |
N7 |
C6 |
179.6 |
180.0 |
N7 |
C5 |
C6 |
N6 |
359.8 |
0.0 |
N9 |
C8 |
N7 |
C5 |
360.0 |
0.1 |
C5 |
N7 |
C8 |
H8 |
180.0 |
180.0 |
N1 |
C6 |
C5 |
N7 |
179.6 |
180.5 |
C5 |
C6 |
N1 |
N6 |
180.2 |
179.5 |
N1 |
C6 |
N6 |
HN6 |
101.1 |
179.5 |
N6 |
C6 |
C5 |
N7 |
359.8 |
0.0 |
CA' |
N6 |
C6 |
HN6 |
240.0 |
180.0 |
C5 |
N7 |
C8 |
N9 |
360.0 |
0.1 |
N7 |
C8 |
N9 |
H8 |
180.0 |
180.0 |
N9 |
C8 |
N7 |
H8 |
180.0 |
180.0 |
N9 |
C8 |
H8 |
N7 |
180.0 |
180.0 |
N9 |
C9 |
C10 |
C11 |
136.0 |
240.1 |
N9 |
C9 |
C10 |
H9 |
249.0 |
120.0 |
C11 |
C9 |
C10 |
H9 |
113.0 |
240.0 |
C10 |
C9 |
C11 |
H11 |
313.9 |
300.0 |
C10 |
C9 |
C11 |
H11A |
73.9 |
60.0 |
C10 |
C9 |
C11 |
H11B |
193.9 |
180.0 |
C9 |
N9 |
C8 |
N7 |
179.0 |
180.0 |
C9 |
N9 |
C8 |
H8 |
359.0 |
0.0 |
C10 |
C9 |
N9 |
C11 |
225.6 |
119.9 |
C10 |
C9 |
N9 |
H9 |
113.8 |
240.0 |
C11 |
C9 |
N9 |
H9 |
248.2 |
120.0 |
N9 |
C9 |
C11 |
H11 |
178.7 |
60.0 |
N9 |
C9 |
C11 |
H11A |
298.7 |
180.0 |
N9 |
C9 |
C11 |
H11B |
58.7 |
300.0 |
C10 |
C9 |
C11 |
N9 |
135.2 |
240.0 |
C10 |
C9 |
C11 |
H9 |
245.6 |
120.0 |
N9 |
C9 |
C11 |
H9 |
110.4 |
240.0 |
H11 |
C11 |
C9 |
H11A |
240.0 |
240.0 |
H11 |
C11 |
C9 |
H11B |
120.0 |
120.0 |
H11A |
C11 |
C9 |
H11B |
240.0 |
240.0 |
C10 |
C9 |
H9 |
N9 |
240.0 |
120.0 |
C10 |
C9 |
H9 |
C11 |
119.0 |
240.0 |
N9 |
C9 |
H9 |
C11 |
239.0 |
120.0 |
H9 |
C9 |
C11 |
H11 |
68.2 |
180.0 |
H9 |
C9 |
C11 |
H11A |
188.3 |
300.0 |
H9 |
C9 |
C11 |
H11B |
308.3 |
60.0 |
H10 |
C10 |
C9 |
N9 |
253.0 |
60.0 |
H10 |
C10 |
C9 |
C11 |
117.0 |
180.0 |
H10 |
C10 |
C9 |
H9 |
4.0 |
300.0 |
H10A |
C10 |
H10 |
H10B |
120.0 |
120.1 |
H10A |
C10 |
C9 |
N9 |
13.0 |
180.0 |
H10A |
C10 |
C9 |
C11 |
237.0 |
300.0 |
H10A |
C10 |
C9 |
H9 |
124.0 |
60.0 |
H10 |
C10 |
H10A |
H10B |
240.0 |
240.0 |
H10B |
C10 |
C9 |
N9 |
133.0 |
300.1 |
H10B |
C10 |
C9 |
C11 |
357.0 |
60.0 |
H10B |
C10 |
C9 |
H9 |
244.1 |
180.0 |
H10 |
C10 |
H10B |
H10A |
120.0 |
120.1 |
C15 |
C12 |
C13 |
N2 |
120.5 |
120.0 |
C15 |
C12 |
C13 |
H12 |
240.8 |
239.9 |
C13 |
C12 |
C15 |
H15 |
9.0 |
65.0 |
C13 |
C12 |
C15 |
H15A |
128.9 |
185.0 |
N2 |
C12 |
C13 |
H12 |
120.3 |
120.0 |
C13 |
C12 |
N2 |
HN2 |
140.9 |
25.0 |
C13 |
C12 |
C15 |
N2 |
238.7 |
240.0 |
C13 |
C12 |
C15 |
H12 |
118.4 |
120.1 |
N2 |
C12 |
C15 |
H12 |
239.7 |
240.0 |
C15 |
C12 |
N2 |
HN2 |
18.6 |
265.0 |
C12 |
C15 |
O1 |
HO1 |
303.2 |
180.0 |
H15 |
C15 |
C12 |
H15A |
240.0 |
240.0 |
C12 |
N2 |
C2 |
N1 |
169.7 |
0.1 |
C13 |
C12 |
N2 |
H12 |
241.6 |
240.0 |
C15 |
C12 |
N2 |
H12 |
119.3 |
120.0 |
N2 |
C12 |
C15 |
O1 |
10.2 |
65.0 |
N2 |
C12 |
C15 |
H15 |
130.3 |
185.0 |
N2 |
C12 |
C15 |
H15A |
250.2 |
305.0 |
C13 |
C12 |
H12 |
N2 |
119.9 |
120.0 |
C15 |
C12 |
H12 |
N2 |
240.9 |
240.0 |
H12 |
C12 |
C15 |
O1 |
130.6 |
185.0 |
H12 |
C12 |
C15 |
H15 |
250.6 |
305.0 |
H12 |
C12 |
C15 |
H15A |
10.5 |
65.0 |
H12 |
C12 |
N2 |
HN2 |
259.4 |
145.0 |
C14 |
C13 |
C12 |
N2 |
109.5 |
65.0 |
C14 |
C13 |
C12 |
H12 |
349.2 |
305.1 |
H14 |
C14 |
C13 |
H14A |
240.0 |
240.0 |
H14 |
C14 |
C13 |
H14B |
119.9 |
120.0 |
H14A |
C14 |
C13 |
H14B |
240.0 |
240.1 |
H13 |
C13 |
C14 |
H13A |
121.0 |
120.0 |
C13 |
C14 |
H14 |
H14A |
120.0 |
120.0 |
C13 |
C14 |
H14 |
H14B |
240.0 |
240.0 |
H14 |
C14 |
C13 |
H13 |
30.6 |
300.0 |
H14 |
C14 |
C13 |
H13A |
269.6 |
180.0 |
H14A |
C14 |
H14 |
H14B |
120.0 |
120.0 |
C13 |
C14 |
H14A |
H14 |
240.0 |
240.0 |
C13 |
C14 |
H14A |
H14B |
120.0 |
119.9 |
H14A |
C14 |
C13 |
H13 |
150.6 |
60.1 |
H14A |
C14 |
C13 |
H13A |
29.6 |
300.0 |
H14 |
C14 |
H14A |
H14B |
240.0 |
239.9 |
C13 |
C14 |
H14B |
H14 |
120.0 |
120.0 |
C13 |
C14 |
H14B |
H14A |
240.0 |
240.1 |
H14B |
C14 |
C13 |
H13 |
270.6 |
180.0 |
H14B |
C14 |
C13 |
H13A |
149.6 |
60.0 |
H14 |
C14 |
H14B |
H14A |
120.0 |
120.1 |
O1 |
C15 |
C12 |
N2 |
10.2 |
65.0 |
O1 |
C15 |
C12 |
H12 |
130.6 |
185.0 |
C12 |
C15 |
O1 |
H15 |
120.0 |
120.0 |
C12 |
C15 |
O1 |
H15A |
240.0 |
240.0 |
H15 |
C15 |
C12 |
N2 |
130.3 |
185.0 |
H15 |
C15 |
C12 |
H12 |
250.6 |
305.0 |
C12 |
C15 |
H15 |
O1 |
240.1 |
240.0 |
C12 |
C15 |
H15 |
H15A |
120.0 |
120.0 |
H15 |
C15 |
O1 |
HO1 |
183.2 |
60.0 |
H15A |
C15 |
C12 |
N2 |
250.2 |
305.0 |
H15A |
C15 |
C12 |
H12 |
10.5 |
65.0 |
C12 |
C15 |
H15A |
O1 |
119.9 |
120.0 |
C12 |
C15 |
H15A |
H15 |
240.0 |
240.0 |
H15A |
C15 |
O1 |
HO1 |
63.3 |
299.9 |
H13 |
C13 |
C12 |
N2 |
229.5 |
185.0 |
H13 |
C13 |
C12 |
H12 |
109.2 |
65.0 |
H13 |
C13 |
C14 |
H14 |
30.6 |
300.0 |
H13 |
C13 |
C14 |
H14A |
150.6 |
60.1 |
H13 |
C13 |
C14 |
H14B |
270.6 |
180.0 |
C14 |
C13 |
H13 |
H13A |
241.0 |
240.0 |
H13A |
C13 |
C12 |
N2 |
350.6 |
305.0 |
H13A |
C13 |
C12 |
H12 |
230.3 |
185.0 |
H13A |
C13 |
C14 |
H14 |
269.6 |
180.0 |
H13A |
C13 |
C14 |
H14A |
29.6 |
300.0 |
H13A |
C13 |
C14 |
H14B |
149.6 |
60.0 |
C14 |
C13 |
H13A |
H13 |
119.3 |
120.0 |
HN2 |
N2 |
C2 |
N1 |
289.8 |
180.0 |
HN2 |
N2 |
C12 |
H12 |
259.4 |
145.0 |
H11 |
C11 |
C9 |
H9 |
68.2 |
180.0 |
C9 |
C11 |
H11 |
H11A |
120.0 |
120.0 |
C9 |
C11 |
H11 |
H11B |
240.0 |
240.0 |
H11A |
C11 |
H11 |
H11B |
120.0 |
120.0 |
H11A |
C11 |
C9 |
H9 |
188.3 |
300.0 |
C9 |
C11 |
H11A |
H11 |
239.9 |
240.0 |
C9 |
C11 |
H11A |
H11B |
120.0 |
120.0 |
H11 |
C11 |
H11A |
H11B |
240.0 |
240.0 |
H11B |
C11 |
C9 |
H9 |
308.3 |
60.0 |
C9 |
C11 |
H11B |
H11 |
120.0 |
120.0 |
C9 |
C11 |
H11B |
H11A |
240.0 |
240.0 |
H11 |
C11 |
H11B |
H11A |
120.0 |
120.0 |
C6 |
N6 |
CA' |
HN6 |
120.0 |
180.0 |
C1' |
CA' |
N6 |
HN6 |
344.1 |
360.0 |
HA' |
CA' |
C1' |
HA'A |
119.4 |
119.9 |
C6' |
C1' |
CA' |
C2' |
180.2 |
180.3 |
CA' |
C1' |
C2' |
C3' |
180.1 |
179.7 |
CA' |
C1' |
C2' |
H2' |
0.1 |
0.1 |
HA' |
CA' |
N6 |
HN6 |
104.1 |
120.0 |
C1' |
CA' |
HA' |
HA'A |
239.5 |
240.1 |
HA' |
CA' |
C1' |
C2' |
284.1 |
329.9 |
HA'A |
CA' |
N6 |
HN6 |
223.6 |
240.0 |
C1' |
CA' |
HA'A |
HA' |
120.3 |
120.0 |
HA'A |
CA' |
C1' |
C2' |
164.7 |
210.0 |
C6' |
C1' |
CA' |
HA' |
104.3 |
150.3 |
C6' |
C1' |
CA' |
HA'A |
344.9 |
30.3 |
CA' |
C1' |
C6' |
C2' |
179.8 |
179.7 |
C6' |
C1' |
C2' |
C3' |
360.0 |
359.4 |
C6' |
C1' |
C2' |
H2' |
180.0 |
179.7 |
C2' |
C1' |
CA' |
HA' |
284.1 |
329.9 |
C2' |
C1' |
CA' |
HA'A |
164.7 |
210.0 |
C1' |
C2' |
C3' |
H3' |
180.0 |
180.3 |
C5' |
C6' |
C1' |
C2' |
0.3 |
0.3 |
C4' |
C5' |
C6' |
H5' |
180.0 |
180.1 |
C6' |
C5' |
C4' |
C3' |
0.4 |
359.9 |
C6' |
C5' |
C4' |
C1B |
180.3 |
180.0 |
H6' |
C6' |
C1' |
C2' |
180.3 |
180.3 |
H6' |
C6' |
C5' |
C4' |
179.6 |
180.1 |
H6' |
C6' |
C5' |
H5' |
359.5 |
360.0 |
C4' |
C5' |
C6' |
H6' |
179.6 |
180.1 |
C6' |
C5' |
C4' |
H5' |
180.0 |
179.9 |
C3' |
C4' |
C5' |
C1B |
180.0 |
180.0 |
C5' |
C4' |
C3' |
H3' |
179.9 |
180.0 |
C5' |
C4' |
C1B |
N1B |
194.2 |
360.0 |
H5' |
C5' |
C6' |
H6' |
359.5 |
360.0 |
C6' |
C5' |
H5' |
C4' |
180.0 |
180.1 |
H5' |
C5' |
C4' |
C3' |
180.4 |
180.0 |
H5' |
C5' |
C4' |
C1B |
0.4 |
0.0 |
C1' |
C2' |
C3' |
C4' |
359.9 |
0.6 |
C3' |
C4' |
C5' |
H5' |
180.4 |
180.0 |
C5' |
C4' |
C3' |
C1B |
180.0 |
180.0 |
C3' |
C4' |
C1B |
N1B |
14.2 |
180.0 |
C2' |
C3' |
C4' |
H3' |
180.0 |
179.8 |
C1B |
C4' |
C5' |
H5' |
0.4 |
0.0 |
C5' |
C4' |
C1B |
C3' |
180.0 |
180.0 |
C1B |
C4' |
C3' |
H3' |
359.9 |
360.0 |
C4' |
C1B |
N1B |
C5B |
179.7 |
180.0 |
C1' |
C2' |
C3' |
H2' |
180.0 |
180.4 |
C2' |
C3' |
C4' |
C1B |
179.9 |
179.7 |
C4' |
C3' |
C2' |
H3' |
180.0 |
180.3 |
H3' |
C3' |
C4' |
C1B |
359.9 |
360.0 |
C1' |
C2' |
H2' |
C3' |
180.0 |
179.6 |
H2' |
C2' |
C3' |
H3' |
359.9 |
360.0 |
C1B |
N1B |
C5B |
H5B |
180.4 |
180.0 |
C4B |
C5B |
N1B |
H5B |
180.0 |
180.0 |
N1B |
C5B |
C4B |
H5B |
180.0 |
180.0 |
C3B |
C4B |
C5B |
H5B |
179.7 |
180.0 |
H4B |
C4B |
C5B |
H5B |
359.7 |
360.0 |
C2B |
C3B |
C4B |
H4B |
180.2 |
179.7 |
H3B |
C3B |
C4B |
H4B |
0.2 |
0.0 |
H2B |
C2B |
C3B |
H3B |
359.7 |
360.0 |