PDB Chemical Component RC8

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for RC8

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N2 C2 1.339 1.385
N3 C2 1.347 1.323
C2 N1 1.351 1.327
N3 C4 1.350 1.330
N9 C4 1.323 1.371
C4 C5 1.458 1.404
C5 C6 1.481 1.406
C5 N7 1.343 1.356
N1 C6 1.349 1.328
C6 N6 1.342 1.383
N9 C8 1.337 1.365
C8 N7 1.365 1.301
C8 H8 1.080 1.079
C10 C9 1.577 1.531
C9 N9 1.477 1.465
C9 C11 1.583 1.530
C9 H9 1.100 1.090
C10 H10 1.100 1.090
C10 H10A 1.100 1.089
C10 H10B 1.100 1.090
C13 C12 1.536 1.530
C12 C15 1.529 1.530
C12 N2 1.450 1.466
C12 H12 1.100 1.090
C14 C13 1.512 1.530
C14 H14 1.100 1.090
C14 H14A 1.100 1.090
C14 H14B 1.099 1.091
C15 O1 1.440 1.428
O1 HO1 0.950 0.967
C15 H15 1.100 1.090
C15 H15A 1.100 1.090
C13 H13 1.100 1.091
C13 H13A 1.100 1.090
N2 HN2 1.000 0.970
C11 H11 1.100 1.090
C11 H11A 1.100 1.089
C11 H11B 1.100 1.090
CA' N6 1.450 1.464
N6 HN6 1.000 0.971
CA' C1' 1.506 1.507
CA' HA' 1.100 1.089
CA' HA'A 1.100 1.090
C6' C1' 1.391 1.384
C1' C2' 1.395 1.383
C6' C5' 1.391 1.380
C6' H6' 1.080 1.079
C5' C4' 1.399 1.393
C5' H5' 1.080 1.080
C4' C3' 1.392 1.394
C4' C1B 1.495 1.484
C2' C3' 1.384 1.380
C3' H3' 1.080 1.080
C2' H2' 1.080 1.079
C2B C1B 1.402 1.393
C1B N1B 1.353 1.327
N1B C5B 1.341 1.317
C4B C5B 1.394 1.383
C5B H5B 1.080 1.079
C3B C4B 1.395 1.387
C4B H4B 1.079 1.081
C2B C3B 1.391 1.384
C3B H3B 1.080 1.080
C2B H2B 1.080 1.081

Bond Angles for RC8

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
N2 C2 N1 119.1 118.9
C2 N1 C6 122.0 121.1
C4 C5 C6 116.0 118.3
C4 C5 N7 105.6 107.2
C6 C5 N7 138.4 134.5
C5 C6 N6 122.3 120.7
C5 N7 C8 108.5 109.4
N1 C6 N6 119.2 120.7
C6 N6 HN6 106.7 120.0
N9 C8 N7 109.5 110.0
N9 C8 H8 125.3 125.0
N7 C8 H8 125.3 125.0
C10 C9 N9 114.6 109.5
C10 C9 C11 112.7 109.4
C10 C9 H9 106.1 109.5
N9 C9 C11 116.3 109.5
N9 C9 H9 101.4 109.5
C11 C9 H9 103.8 109.5
C9 C11 H11 109.5 109.5
C9 C11 H11A 109.5 109.4
C9 C11 H11B 109.5 109.5
H10 C10 H10A 109.5 109.5
H10 C10 H10B 109.4 109.4
H10A C10 H10B 109.5 109.5
C13 C12 N2 109.9 109.4
C13 C12 H12 107.5 109.5
C15 C12 N2 108.6 109.5
C15 C12 H12 108.8 109.5
C12 C15 O1 109.4 109.5
C12 C15 H15 109.5 109.5
C12 C15 H15A 109.5 109.5
N2 C12 H12 110.5 109.4
C12 N2 HN2 106.5 120.0
C13 C14 H14 109.5 109.5
C13 C14 H14A 109.4 109.4
C13 C14 H14B 109.5 109.4
C14 C13 H13 108.7 109.5
C14 C13 H13A 108.1 109.5
H14 C14 H14A 109.5 109.5
H14 C14 H14B 109.4 109.5
H14A C14 H14B 109.5 109.4
C15 O1 HO1 109.5 114.0
H15 C15 H15A 109.4 109.5
H13 C13 H13A 111.4 109.5
H11 C11 H11A 109.5 109.5
H11 C11 H11B 109.4 109.5
H11A C11 H11B 109.5 109.5
CA' N6 HN6 106.7 120.0
C1' CA' HA' 109.9 109.5
C1' CA' HA'A 110.2 109.4
CA' C1' C2' 119.1 119.9
HA' CA' HA'A 108.4 109.4
C6' C1' C2' 120.9 120.3
C1' C2' C3' 120.0 120.1
C1' C2' H2' 120.0 120.0
C5' C6' H6' 120.5 120.0
C6' C5' C4' 120.3 119.9
C6' C5' H5' 119.8 120.1
C4' C5' H5' 119.9 120.0
C5' C4' C3' 120.1 119.7
C5' C4' C1B 120.9 120.1
C3' C4' C1B 119.0 120.1
C4' C3' H3' 120.2 120.0
C4' C1B N1B 119.3 119.7
C2' C3' H3' 120.1 120.1
C1B N1B C5B 121.5 121.6
N1B C5B H5B 119.9 119.6
C4B C5B H5B 120.0 119.5
C3B C4B H4B 120.1 120.3
C2B C3B H3B 120.4 120.8

Torsion Angles for RC8

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
N2 C2 N1 C6 180.0 180.0
C2 N1 C6 N6 180.0 179.9
N9 C4 C5 N7 359.9 360.0
C6 C5 C4 N7 179.7 180.0
C4 C5 C6 N6 180.2 180.0
C4 C5 N7 C8 0.1 360.0
C2 N1 C6 C5 0.2 359.5
C4 C5 C6 N7 180.4 180.0
C6 C5 N7 C8 180.5 180.0
N1 C6 C5 N6 179.8 180.5
C5 C6 N6 HN6 280.9 360.0
C4 C5 N7 C6 179.6 180.0
N7 C5 C6 N6 359.8 0.0
N9 C8 N7 C5 360.0 0.1
C5 N7 C8 H8 180.0 180.0
N1 C6 C5 N7 179.6 180.5
C5 C6 N1 N6 180.2 179.5
N1 C6 N6 HN6 101.1 179.5
N6 C6 C5 N7 359.8 0.0
CA' N6 C6 HN6 240.0 180.0
C5 N7 C8 N9 360.0 0.1
N7 C8 N9 H8 180.0 180.0
N9 C8 N7 H8 180.0 180.0
N9 C8 H8 N7 180.0 180.0
N9 C9 C10 C11 136.0 240.1
N9 C9 C10 H9 249.0 120.0
C11 C9 C10 H9 113.0 240.0
C10 C9 C11 H11 313.9 300.0
C10 C9 C11 H11A 73.9 60.0
C10 C9 C11 H11B 193.9 180.0
C9 N9 C8 N7 179.0 180.0
C9 N9 C8 H8 359.0 0.0
C10 C9 N9 C11 225.6 119.9
C10 C9 N9 H9 113.8 240.0
C11 C9 N9 H9 248.2 120.0
N9 C9 C11 H11 178.7 60.0
N9 C9 C11 H11A 298.7 180.0
N9 C9 C11 H11B 58.7 300.0
C10 C9 C11 N9 135.2 240.0
C10 C9 C11 H9 245.6 120.0
N9 C9 C11 H9 110.4 240.0
H11 C11 C9 H11A 240.0 240.0
H11 C11 C9 H11B 120.0 120.0
H11A C11 C9 H11B 240.0 240.0
C10 C9 H9 N9 240.0 120.0
C10 C9 H9 C11 119.0 240.0
N9 C9 H9 C11 239.0 120.0
H9 C9 C11 H11 68.2 180.0
H9 C9 C11 H11A 188.3 300.0
H9 C9 C11 H11B 308.3 60.0
H10 C10 C9 N9 253.0 60.0
H10 C10 C9 C11 117.0 180.0
H10 C10 C9 H9 4.0 300.0
H10A C10 H10 H10B 120.0 120.1
H10A C10 C9 N9 13.0 180.0
H10A C10 C9 C11 237.0 300.0
H10A C10 C9 H9 124.0 60.0
H10 C10 H10A H10B 240.0 240.0
H10B C10 C9 N9 133.0 300.1
H10B C10 C9 C11 357.0 60.0
H10B C10 C9 H9 244.1 180.0
H10 C10 H10B H10A 120.0 120.1
C15 C12 C13 N2 120.5 120.0
C15 C12 C13 H12 240.8 239.9
C13 C12 C15 H15 9.0 65.0
C13 C12 C15 H15A 128.9 185.0
N2 C12 C13 H12 120.3 120.0
C13 C12 N2 HN2 140.9 25.0
C13 C12 C15 N2 238.7 240.0
C13 C12 C15 H12 118.4 120.1
N2 C12 C15 H12 239.7 240.0
C15 C12 N2 HN2 18.6 265.0
C12 C15 O1 HO1 303.2 180.0
H15 C15 C12 H15A 240.0 240.0
C12 N2 C2 N1 169.7 0.1
C13 C12 N2 H12 241.6 240.0
C15 C12 N2 H12 119.3 120.0
N2 C12 C15 O1 10.2 65.0
N2 C12 C15 H15 130.3 185.0
N2 C12 C15 H15A 250.2 305.0
C13 C12 H12 N2 119.9 120.0
C15 C12 H12 N2 240.9 240.0
H12 C12 C15 O1 130.6 185.0
H12 C12 C15 H15 250.6 305.0
H12 C12 C15 H15A 10.5 65.0
H12 C12 N2 HN2 259.4 145.0
C14 C13 C12 N2 109.5 65.0
C14 C13 C12 H12 349.2 305.1
H14 C14 C13 H14A 240.0 240.0
H14 C14 C13 H14B 119.9 120.0
H14A C14 C13 H14B 240.0 240.1
H13 C13 C14 H13A 121.0 120.0
C13 C14 H14 H14A 120.0 120.0
C13 C14 H14 H14B 240.0 240.0
H14 C14 C13 H13 30.6 300.0
H14 C14 C13 H13A 269.6 180.0
H14A C14 H14 H14B 120.0 120.0
C13 C14 H14A H14 240.0 240.0
C13 C14 H14A H14B 120.0 119.9
H14A C14 C13 H13 150.6 60.1
H14A C14 C13 H13A 29.6 300.0
H14 C14 H14A H14B 240.0 239.9
C13 C14 H14B H14 120.0 120.0
C13 C14 H14B H14A 240.0 240.1
H14B C14 C13 H13 270.6 180.0
H14B C14 C13 H13A 149.6 60.0
H14 C14 H14B H14A 120.0 120.1
O1 C15 C12 N2 10.2 65.0
O1 C15 C12 H12 130.6 185.0
C12 C15 O1 H15 120.0 120.0
C12 C15 O1 H15A 240.0 240.0
H15 C15 C12 N2 130.3 185.0
H15 C15 C12 H12 250.6 305.0
C12 C15 H15 O1 240.1 240.0
C12 C15 H15 H15A 120.0 120.0
H15 C15 O1 HO1 183.2 60.0
H15A C15 C12 N2 250.2 305.0
H15A C15 C12 H12 10.5 65.0
C12 C15 H15A O1 119.9 120.0
C12 C15 H15A H15 240.0 240.0
H15A C15 O1 HO1 63.3 299.9
H13 C13 C12 N2 229.5 185.0
H13 C13 C12 H12 109.2 65.0
H13 C13 C14 H14 30.6 300.0
H13 C13 C14 H14A 150.6 60.1
H13 C13 C14 H14B 270.6 180.0
C14 C13 H13 H13A 241.0 240.0
H13A C13 C12 N2 350.6 305.0
H13A C13 C12 H12 230.3 185.0
H13A C13 C14 H14 269.6 180.0
H13A C13 C14 H14A 29.6 300.0
H13A C13 C14 H14B 149.6 60.0
C14 C13 H13A H13 119.3 120.0
HN2 N2 C2 N1 289.8 180.0
HN2 N2 C12 H12 259.4 145.0
H11 C11 C9 H9 68.2 180.0
C9 C11 H11 H11A 120.0 120.0
C9 C11 H11 H11B 240.0 240.0
H11A C11 H11 H11B 120.0 120.0
H11A C11 C9 H9 188.3 300.0
C9 C11 H11A H11 239.9 240.0
C9 C11 H11A H11B 120.0 120.0
H11 C11 H11A H11B 240.0 240.0
H11B C11 C9 H9 308.3 60.0
C9 C11 H11B H11 120.0 120.0
C9 C11 H11B H11A 240.0 240.0
H11 C11 H11B H11A 120.0 120.0
C6 N6 CA' HN6 120.0 180.0
C1' CA' N6 HN6 344.1 360.0
HA' CA' C1' HA'A 119.4 119.9
C6' C1' CA' C2' 180.2 180.3
CA' C1' C2' C3' 180.1 179.7
CA' C1' C2' H2' 0.1 0.1
HA' CA' N6 HN6 104.1 120.0
C1' CA' HA' HA'A 239.5 240.1
HA' CA' C1' C2' 284.1 329.9
HA'A CA' N6 HN6 223.6 240.0
C1' CA' HA'A HA' 120.3 120.0
HA'A CA' C1' C2' 164.7 210.0
C6' C1' CA' HA' 104.3 150.3
C6' C1' CA' HA'A 344.9 30.3
CA' C1' C6' C2' 179.8 179.7
C6' C1' C2' C3' 360.0 359.4
C6' C1' C2' H2' 180.0 179.7
C2' C1' CA' HA' 284.1 329.9
C2' C1' CA' HA'A 164.7 210.0
C1' C2' C3' H3' 180.0 180.3
C5' C6' C1' C2' 0.3 0.3
C4' C5' C6' H5' 180.0 180.1
C6' C5' C4' C3' 0.4 359.9
C6' C5' C4' C1B 180.3 180.0
H6' C6' C1' C2' 180.3 180.3
H6' C6' C5' C4' 179.6 180.1
H6' C6' C5' H5' 359.5 360.0
C4' C5' C6' H6' 179.6 180.1
C6' C5' C4' H5' 180.0 179.9
C3' C4' C5' C1B 180.0 180.0
C5' C4' C3' H3' 179.9 180.0
C5' C4' C1B N1B 194.2 360.0
H5' C5' C6' H6' 359.5 360.0
C6' C5' H5' C4' 180.0 180.1
H5' C5' C4' C3' 180.4 180.0
H5' C5' C4' C1B 0.4 0.0
C1' C2' C3' C4' 359.9 0.6
C3' C4' C5' H5' 180.4 180.0
C5' C4' C3' C1B 180.0 180.0
C3' C4' C1B N1B 14.2 180.0
C2' C3' C4' H3' 180.0 179.8
C1B C4' C5' H5' 0.4 0.0
C5' C4' C1B C3' 180.0 180.0
C1B C4' C3' H3' 359.9 360.0
C4' C1B N1B C5B 179.7 180.0
C1' C2' C3' H2' 180.0 180.4
C2' C3' C4' C1B 179.9 179.7
C4' C3' C2' H3' 180.0 180.3
H3' C3' C4' C1B 359.9 360.0
C1' C2' H2' C3' 180.0 179.6
H2' C2' C3' H3' 359.9 360.0
C1B N1B C5B H5B 180.4 180.0
C4B C5B N1B H5B 180.0 180.0
N1B C5B C4B H5B 180.0 180.0
C3B C4B C5B H5B 179.7 180.0
H4B C4B C5B H5B 359.7 360.0
C2B C3B C4B H4B 180.2 179.7
H3B C3B C4B H4B 0.2 0.0
H2B C2B C3B H3B 359.7 360.0