PDB Chemical Component RBZ

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for RBZ

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N3 C2 1.339 1.300
N3 C3A 1.381 1.358
N1 C2 1.367 1.361
N1 C7A 1.430 1.381
N1 C1' 1.511 1.464
C2 H2 1.103 1.080
C7A C3A 1.417 1.406
C7A C7 1.442 1.388
C3A C4 1.427 1.396
C4 C5 1.420 1.367
C4 H4 1.103 1.080
C5 C6 1.466 1.388
C5 C8 1.533 1.506
C6 C7 1.416 1.378
C6 C9 1.518 1.507
C7 H7 1.102 1.080
C8 H81 1.115 1.090
C8 H82 1.115 1.090
C8 H83 1.115 1.090
C9 H91 1.115 1.090
C9 H92 1.115 1.090
C9 H93 1.115 1.090
P O1P 1.508 1.481
P O2P 1.492 1.610
P O3P 1.479 1.609
P O5' 1.590 1.610
O2P HOP2 0.950 0.967
O3P HOP3 0.950 0.968
O5' C5' 1.444 1.430
C5' C4' 1.532 1.530
C5' H5'1 1.115 1.090
C5' H5'2 1.115 1.091
C4' O4' 1.474 1.436
C4' C3' 1.506 1.549
C4' H4' 1.115 1.091
O4' C1' 1.431 1.432
C3' O3' 1.443 1.430
C3' C2' 1.527 1.555
C3' H3' 1.114 1.089
O3' HO'3 0.950 0.967
C2' O2' 1.432 1.429
C2' C1' 1.534 1.543
C2' H2' 1.115 1.090
O2' HO'2 0.950 0.967
C1' H1' 1.115 1.090

Bond Angles for RBZ

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 N3 C3A 106.4 109.7
N3 C2 N1 115.4 110.2
N3 C2 H2 121.3 125.0
N3 C3A C7A 107.0 106.9
N3 C3A C4 131.8 133.6
C2 N1 C7A 102.1 107.2
C2 N1 C1' 129.8 126.4
N1 C2 H2 123.2 124.9
C7A N1 C1' 128.1 126.4
N1 C7A C3A 109.0 106.0
N1 C7A C7 131.5 134.1
N1 C1' O4' 112.5 109.8
N1 C1' C2' 116.4 109.8
N1 C1' H1' 100.4 109.8
C3A C7A C7 119.5 119.9
C7A C3A C4 121.2 119.5
C7A C7 C6 120.3 119.7
C7A C7 H7 120.8 120.2
C3A C4 C5 119.8 119.9
C3A C4 H4 120.4 120.1
C5 C4 H4 119.9 120.0
C4 C5 C6 119.7 120.6
C4 C5 C8 119.1 119.7
C6 C5 C8 121.1 119.7
C5 C6 C7 119.5 120.5
C5 C6 C9 121.4 119.7
C5 C8 H81 108.7 109.5
C5 C8 H82 119.1 109.5
C5 C8 H83 108.7 109.5
C7 C6 C9 119.1 119.8
C6 C7 H7 118.9 120.2
C6 C9 H91 107.9 109.4
C6 C9 H92 121.4 109.5
C6 C9 H93 107.9 109.5
H81 C8 H82 108.7 109.4
H81 C8 H83 101.3 109.4
H82 C8 H83 108.8 109.5
H91 C9 H92 107.9 109.5
H91 C9 H93 101.9 109.5
H92 C9 H93 108.0 109.5
O1P P O2P 109.6 109.5
O1P P O3P 110.0 109.5
O1P P O5' 109.3 109.4
O2P P O3P 108.9 109.5
O2P P O5' 108.6 109.4
P O2P HOP2 109.6 106.8
O3P P O5' 110.4 109.5
P O3P HOP3 110.0 106.8
P O5' C5' 119.9 106.8
O5' C5' C4' 113.1 109.5
O5' C5' H5'1 110.9 109.5
O5' C5' H5'2 110.9 109.5
C4' C5' H5'1 110.9 109.5
C4' C5' H5'2 110.8 109.5
C5' C4' O4' 113.7 110.3
C5' C4' C3' 116.3 110.4
C5' C4' H4' 99.4 110.2
H5'1 C5' H5'2 99.5 109.4
O4' C4' C3' 102.1 105.2
O4' C4' H4' 114.3 110.3
C4' O4' C1' 112.5 109.9
C3' C4' H4' 111.6 110.3
C4' C3' O3' 112.4 111.1
C4' C3' C2' 100.5 101.0
C4' C3' H3' 115.1 111.1
O4' C1' C2' 102.5 107.7
O4' C1' H1' 114.8 109.8
O3' C3' C2' 114.2 111.2
O3' C3' H3' 101.8 111.0
C3' O3' HO'3 112.4 106.8
C2' C3' H3' 113.4 111.1
C3' C2' O2' 108.5 110.9
C3' C2' C1' 104.2 102.2
C3' C2' H2' 115.3 110.8
O2' C2' C1' 114.5 111.0
O2' C2' H2' 105.2 110.8
C2' O2' HO'2 108.5 106.8
C1' C2' H2' 109.4 111.0
C2' C1' H1' 110.8 109.9

Torsion Angles for RBZ

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C2 N3 C3A C7A 359.6 360.0
C2 N3 C3A C4 179.6 180.0
N3 C2 N1 C7A 0.2 360.0
N3 C2 N1 C1' 180.4 180.0
N1 C2 N3 H2 180.0 180.1
C3A N3 C2 N1 0.1 0.0
C3A N3 C2 H2 180.1 180.0
N1 C7A C3A N3 0.5 0.0
N3 C3A C7A C7 180.3 180.0
C7A C3A N3 C4 180.0 179.9
N3 C3A C4 C5 179.9 180.0
N3 C3A C4 H4 359.9 360.0
N1 C2 N3 C3A 0.1 0.0
N3 C2 N1 H2 180.0 179.9
C7A N1 C2 C1' 179.8 179.9
C2 N1 C7A C3A 359.6 0.0
C2 N1 C7A C7 179.9 180.0
C2 N1 C1' O4' 191.6 336.6
C2 N1 C1' C2' 309.5 94.8
C2 N1 C1' H1' 69.1 215.7
N3 C3A C7A N1 0.5 0.0
C2 N1 C7A C1' 180.2 180.1
C7A N1 C2 H2 180.2 180.0
C7A N1 C1' O4' 11.8 156.6
C7A N1 C1' C2' 129.7 274.8
C7A N1 C1' H1' 249.3 35.8
C3A C7A N1 C7 179.7 180.0
N1 C7A C3A C4 180.5 179.9
N1 C7A C7 C6 179.6 179.8
N1 C7A C7 H7 359.6 0.1
C2 N1 C1' C7A 179.8 179.9
C1' N1 C2 H2 0.4 0.1
C1' N1 C7A C3A 179.4 180.0
C1' N1 C7A C7 359.7 359.9
C4' O4' C1' N1 124.0 117.9
O4' C1' N1 C2' 242.1 241.8
O4' C1' N1 H1' 122.5 120.9
C3' C2' C1' N1 263.7 219.2
O2' C2' C1' N1 22.1 337.4
N1 C1' C2' H2' 139.8 101.0
C2' C1' N1 H1' 240.4 239.1
H2 C2 N3 C3A 180.1 180.0
N3 C2 H2 N1 180.0 180.1
H2 C2 N1 C7A 180.2 180.0
H2 C2 N1 C1' 0.4 0.1
N3 C3A C7A C4 180.0 180.1
C3A C7A N1 C1' 179.4 180.0
N1 C7A C3A C7 180.3 180.0
C3A C7A C7 C6 359.9 359.8
C3A C7A C7 H7 179.9 180.0
C7A C3A C4 C5 359.9 0.0
C7A C3A C4 H4 179.9 180.0
C7 C7A N1 C1' 359.7 359.9
N1 C7A C7 C3A 179.7 180.0
C7 C7A C3A C4 0.3 360.0
C5 C6 C7 C7A 359.7 0.4
C7A C7 C6 C9 180.0 180.0
C6 C7 C7A H7 180.0 179.8
N3 C3A C4 C7A 180.0 179.9
C4 C3A C7A C7 0.3 360.0
C5 C4 C3A H4 180.0 180.0
C3A C4 C5 C6 359.7 0.2
C3A C4 C5 C8 179.7 180.0
C3A C4 C5 H4 180.0 180.0
C6 C5 C4 C8 180.0 180.2
C4 C5 C6 C7 0.4 359.6
C4 C5 C6 C9 180.2 180.0
C4 C5 C8 H81 54.7 90.0
C4 C5 C8 H82 180.0 209.9
C4 C5 C8 H83 305.3 330.0
C3A C4 H4 C5 180.0 180.0
H4 C4 C5 C6 179.7 180.2
H4 C4 C5 C8 359.7 360.0
C7A C7 C6 C5 359.7 0.4
C6 C5 C4 H4 179.7 180.2
C4 C5 C6 C8 180.0 179.8
C6 C5 C8 H81 234.7 269.8
C6 C5 C8 H82 360.0 29.7
C6 C5 C8 H83 125.2 149.8
C7 C6 C5 C9 180.2 179.6
C5 C6 C7 H7 179.7 180.2
C5 C6 C9 H91 54.8 269.6
C5 C6 C9 H92 180.0 29.6
C5 C6 C9 H93 305.3 149.6
C8 C5 C4 H4 359.7 360.0
C4 C5 C8 C6 180.0 180.2
C8 C5 C6 C7 180.5 179.8
C8 C5 C6 C9 0.2 0.2
H81 C8 C5 H82 234.8 240.0
H81 C8 C5 H83 109.5 120.0
H82 C8 C5 H83 234.7 240.0
C7A C7 C6 H7 180.0 180.2
C7 C6 C5 C8 180.5 179.8
C5 C6 C7 C9 179.8 180.4
C7 C6 C9 H91 234.5 90.0
C7 C6 C9 H92 359.8 210.0
C7 C6 C9 H93 125.0 330.0
C9 C6 C5 C8 0.2 0.2
C5 C6 C9 C7 180.2 179.6
C9 C6 C7 H7 360.0 359.8
H91 C9 C6 H92 234.8 240.0
H91 C9 C6 H93 109.5 120.0
H92 C9 C6 H93 234.7 240.0
C7A C7 H7 C6 180.0 179.8
H7 C7 C6 C9 360.0 359.8
C5 C8 H81 H82 131.1 120.0
C5 C8 H81 H83 245.6 240.0
H82 C8 H81 H83 114.5 119.9
C5 C8 H82 H81 234.8 240.0
C5 C8 H82 H83 125.2 120.1
H81 C8 H82 H83 250.5 240.1
C5 C8 H83 H81 114.4 120.0
C5 C8 H83 H82 228.9 239.9
H81 C8 H83 H82 114.4 119.9
C6 C9 H91 H92 132.9 120.0
C6 C9 H91 H93 246.5 240.0
H92 C9 H91 H93 113.6 120.0
C6 C9 H92 H91 234.8 240.0
C6 C9 H92 H93 125.3 120.0
H91 C9 H92 H93 250.5 239.9
C6 C9 H93 H91 113.5 120.0
C6 C9 H93 H92 227.1 240.0
H91 C9 H93 H92 113.6 120.0
O2P P O1P O3P 119.7 120.0
O2P P O1P O5' 241.1 240.1
O1P P O2P HOP2 180.0 300.0
O3P P O1P O5' 121.4 120.0
O1P P O3P HOP3 180.0 180.0
O1P P O5' C5' 59.2 55.0
O1P P O2P O3P 239.6 240.0
O1P P O2P O5' 119.4 119.9
O3P P O2P O5' 239.8 240.0
O2P P O3P HOP3 59.8 60.0
O2P P O5' C5' 178.7 175.0
O1P P O3P O2P 120.2 120.0
O1P P O3P O5' 239.3 240.0
O2P P O3P O5' 119.1 120.0
O3P P O2P HOP2 300.4 60.0
O3P P O5' C5' 298.0 295.0
O1P P O5' O2P 240.4 240.1
O1P P O5' O3P 121.2 120.0
O2P P O5' O3P 240.7 240.0
O5' P O2P HOP2 60.6 180.1
O5' P O3P HOP3 300.8 300.0
P O5' C5' C4' 108.0 180.0
P O5' C5' H5'1 342.8 59.9
P O5' C5' H5'2 233.3 300.0
HOP2 O2P P O3P 300.4 60.0
HOP2 O2P P O5' 60.6 180.1
HOP3 O3P P O5' 300.8 300.0
C4' C5' O5' H5'1 125.3 120.1
C4' C5' O5' H5'2 234.8 240.0
O5' C5' C4' O4' 51.8 66.4
O5' C5' C4' C3' 170.0 182.2
O5' C5' C4' H4' 289.9 304.4
H5'1 C5' O5' H5'2 109.5 119.9
O5' C5' C4' H5'1 234.7 240.0
O5' C5' C4' H5'2 125.3 120.0
H5'1 C5' C4' H5'2 250.5 240.0
O4' C4' C5' C3' 241.8 244.2
O4' C4' C5' H4' 121.9 122.0
C5' C4' O4' C1' 102.0 143.5
C3' C4' C5' H4' 240.1 237.8
C5' C4' C3' O3' 152.7 86.6
C5' C4' C3' C2' 274.5 204.6
C5' C4' C3' H3' 36.8 322.5
O5' C5' H5'1 C4' 126.5 120.1
O5' C5' H5'1 H5'2 243.3 240.0
C4' C5' H5'1 H5'2 116.7 120.0
H5'1 C5' C4' O4' 177.0 186.4
H5'1 C5' C4' C3' 295.3 302.3
H5'1 C5' C4' H4' 55.2 64.4
O5' C5' H5'2 C4' 233.5 240.0
O5' C5' H5'2 H5'1 116.8 120.0
C4' C5' H5'2 H5'1 243.3 240.0
H5'2 C5' C4' O4' 286.5 306.4
H5'2 C5' C4' C3' 44.7 62.2
H5'2 C5' C4' H4' 164.6 184.4
N1 C1' O4' C4' 124.0 117.9
O4' C4' C5' H5'1 177.0 186.4
O4' C4' C5' H5'2 286.5 306.4
C5' C4' O4' C3' 126.1 119.1
C5' C4' O4' H4' 246.8 238.0
C3' C4' O4' H4' 120.7 119.0
O4' C4' C3' O3' 277.1 205.6
O4' C4' C3' C2' 38.9 323.6
O4' C4' C3' H3' 161.2 81.5
C4' O4' C1' C2' 358.2 358.3
C4' O4' C1' H1' 238.0 238.7
C3' C4' C5' H5'1 295.3 302.3
C3' C4' C5' H5'2 44.7 62.2
C5' C4' C3' O4' 235.6 241.0
C5' C4' C3' H4' 113.1 122.1
O4' C4' C3' H4' 237.5 241.1
C3' C4' O4' C1' 335.9 24.4
O3' C3' C4' C2' 238.2 242.0
O3' C3' C4' H3' 115.9 124.1
C4' C3' O3' HO'3 180.0 180.0
C2' C3' C4' H3' 237.7 242.1
C4' C3' C2' O2' 196.3 275.7
C4' C3' C2' C1' 318.7 34.1
C4' C3' C2' H2' 78.7 152.3
H4' C4' C5' H5'1 55.2 64.4
H4' C4' C5' H5'2 164.6 184.4
C5' C4' H4' O4' 121.5 122.0
C5' C4' H4' C3' 236.7 237.8
O4' C4' H4' C3' 115.2 115.7
H4' C4' O4' C1' 215.2 265.4
H4' C4' C3' O3' 39.6 324.5
H4' C4' C3' C2' 161.4 82.5
H4' C4' C3' H3' 283.7 200.4
N1 C1' O4' C2' 125.8 119.5
N1 C1' O4' H1' 246.0 239.2
C1' O4' C4' C3' 335.9 24.4
C1' O4' C4' H4' 215.2 265.4
C3' C2' C1' O4' 26.9 338.7
O2' C2' C1' O4' 145.3 96.9
O4' C1' C2' H2' 263.1 220.5
C2' C1' O4' H1' 120.2 119.6
O3' C3' C4' H4' 39.6 324.5
C4' C3' O3' C2' 113.7 111.6
C4' C3' O3' H3' 236.3 235.8
C2' C3' O3' H3' 122.6 124.2
O3' C3' C2' O2' 316.9 33.7
O3' C3' C2' C1' 79.3 152.0
O3' C3' C2' H2' 199.2 270.3
N1 C1' C2' C3' 263.7 219.2
C2' C3' C4' H4' 161.4 82.5
C4' C3' C2' O3' 239.4 242.1
C4' C3' C2' H3' 123.5 117.9
O4' C1' C2' C3' 26.9 338.7
O3' C3' C2' H3' 244.0 235.9
C2' C3' O3' HO'3 66.3 68.4
O2' C2' C3' C1' 237.6 241.7
O2' C2' C3' H2' 117.6 123.4
C3' C2' O2' HO'2 180.0 298.6
C1' C2' C3' H2' 240.1 241.7
C3' C2' C1' H1' 149.9 98.3
H3' C3' C4' H4' 283.7 200.4
C4' C3' H3' O3' 121.9 124.2
C4' C3' H3' C2' 245.0 248.4
O3' C3' H3' C2' 123.1 124.2
H3' C3' O3' HO'3 303.7 304.2
H3' C3' C2' O2' 72.8 157.8
H3' C3' C2' C1' 195.3 276.1
H3' C3' C2' H2' 315.2 34.4
HO'3 O3' C3' C2' 66.3 68.4
HO'3 O3' C3' H3' 303.7 304.2
N1 C1' C2' O2' 22.1 337.4
O4' C1' C2' O2' 145.3 96.9
O2' C2' C3' H3' 72.8 157.8
C3' C2' O2' C1' 115.9 112.8
C3' C2' O2' H2' 236.1 236.6
C1' C2' O2' H2' 120.2 123.7
O2' C2' C1' H1' 268.3 216.5
N1 C1' C2' O4' 236.8 240.5
N1 C1' C2' H1' 113.8 120.9
O4' C1' C2' H1' 237.0 240.4
C1' C2' C3' H3' 195.3 276.1
C3' C2' C1' O2' 241.6 241.8
C3' C2' C1' H2' 123.8 118.2
O2' C2' C1' H2' 242.2 236.4
C1' C2' O2' HO'2 64.1 185.7
H2' C2' C3' H3' 315.2 34.4
C3' C2' H2' O2' 119.5 123.5
C3' C2' H2' C1' 243.0 247.2
O2' C2' H2' C1' 123.5 123.7
H2' C2' O2' HO'2 303.9 62.0
H2' C2' C1' H1' 26.0 340.1
HO'2 O2' C2' C1' 64.1 185.7
HO'2 O2' C2' H2' 303.9 62.0
N1 C1' H1' O4' 120.9 120.8
N1 C1' H1' C2' 236.4 239.1
O4' C1' H1' C2' 115.5 118.3
H1' C1' C2' H2' 26.0 340.1