PDB Chemical Component RAR
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for RAR
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C02 |
N01 |
1.378 |
1.386 |
| N01 |
HN01 |
1.000 |
0.970 |
| N01 |
HN0A |
1.000 |
0.969 |
| C03 |
C02 |
1.485 |
1.397 |
| N36 |
C02 |
1.424 |
1.329 |
| C32 |
C03 |
1.471 |
1.381 |
| C03 |
C04 |
1.515 |
1.506 |
| C05 |
C04 |
1.499 |
1.507 |
| C04 |
H04 |
1.100 |
1.091 |
| C04 |
H04A |
1.100 |
1.090 |
| C06 |
C05 |
1.533 |
1.386 |
| C31 |
C05 |
1.530 |
1.377 |
| C07 |
C06 |
1.496 |
1.385 |
| C06 |
H06 |
1.080 |
1.080 |
| O08 |
C07 |
1.366 |
1.359 |
| C10 |
C07 |
1.534 |
1.390 |
| O08 |
C09 |
1.370 |
1.429 |
| C09 |
H09 |
1.100 |
1.090 |
| C09 |
H09A |
1.100 |
1.090 |
| C09 |
H09B |
1.100 |
1.091 |
| O11 |
C10 |
1.357 |
1.358 |
| C10 |
C13 |
1.543 |
1.402 |
| C12 |
O11 |
1.423 |
1.430 |
| C12 |
H12 |
1.100 |
1.089 |
| C12 |
H12A |
1.100 |
1.090 |
| C12 |
H12B |
1.100 |
1.090 |
| C14 |
C13 |
1.529 |
1.469 |
| C13 |
C31 |
1.516 |
1.400 |
| C15 |
C14 |
1.301 |
1.351 |
| C14 |
H14 |
1.080 |
1.080 |
| C16 |
C15 |
1.518 |
1.461 |
| C15 |
H15 |
1.080 |
1.080 |
| O30 |
C16 |
1.151 |
1.219 |
| C16 |
N17 |
1.426 |
1.347 |
| C20 |
N17 |
1.478 |
1.469 |
| N17 |
N18 |
1.431 |
1.402 |
| N18 |
C19 |
1.411 |
1.299 |
| C19 |
C25 |
1.487 |
1.474 |
| C19 |
H19 |
1.080 |
1.080 |
| C21 |
C20 |
1.584 |
1.530 |
| C20 |
C24 |
1.575 |
1.509 |
| C20 |
H20 |
1.100 |
1.090 |
| C22 |
C21 |
1.504 |
1.530 |
| C21 |
H21 |
1.100 |
1.091 |
| C21 |
H21A |
1.100 |
1.090 |
| C23 |
C22 |
1.515 |
1.529 |
| C22 |
H22 |
1.099 |
1.091 |
| C22 |
H22A |
1.100 |
1.091 |
| C23 |
H23 |
1.100 |
1.090 |
| C23 |
H23A |
1.100 |
1.090 |
| C23 |
H23B |
1.100 |
1.091 |
| C24 |
C29 |
1.534 |
1.377 |
| C24 |
C25 |
1.467 |
1.392 |
| C25 |
C26 |
1.537 |
1.395 |
| C26 |
C27 |
1.506 |
1.380 |
| C26 |
H26 |
1.080 |
1.081 |
| C28 |
C27 |
1.489 |
1.384 |
| C27 |
H27 |
1.080 |
1.080 |
| C29 |
C28 |
1.496 |
1.378 |
| C28 |
H28 |
1.080 |
1.080 |
| C29 |
H29 |
1.080 |
1.080 |
| C31 |
H31 |
1.080 |
1.080 |
| N33 |
C32 |
1.410 |
1.325 |
| C32 |
H32 |
1.079 |
1.081 |
| N33 |
C34 |
1.490 |
1.325 |
| N35 |
C34 |
1.404 |
1.384 |
| C34 |
N36 |
1.448 |
1.325 |
| N35 |
HN35 |
1.000 |
0.970 |
| N35 |
HN3A |
1.000 |
0.970 |
Bond Angles for RAR
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C02 |
N01 |
HN01 |
109.5 |
120.0 |
| C02 |
N01 |
HN0A |
109.5 |
120.0 |
| HN01 |
N01 |
HN0A |
109.4 |
120.0 |
| C03 |
C04 |
H04 |
108.1 |
109.4 |
| C03 |
C04 |
H04A |
107.2 |
109.5 |
| C05 |
C04 |
H04 |
108.1 |
109.5 |
| C05 |
C04 |
H04A |
107.2 |
109.5 |
| H04 |
C04 |
H04A |
112.7 |
109.4 |
| C07 |
C06 |
H06 |
120.8 |
119.9 |
| O08 |
C09 |
H09 |
109.5 |
109.5 |
| O08 |
C09 |
H09A |
109.5 |
109.5 |
| O08 |
C09 |
H09B |
109.5 |
109.5 |
| H09 |
C09 |
H09A |
109.5 |
109.5 |
| H09 |
C09 |
H09B |
109.4 |
109.4 |
| H09A |
C09 |
H09B |
109.5 |
109.5 |
| O11 |
C10 |
C13 |
120.7 |
120.2 |
| C10 |
C13 |
C31 |
117.1 |
119.6 |
| H12 |
C12 |
H12A |
109.5 |
109.5 |
| H12 |
C12 |
H12B |
109.4 |
109.5 |
| H12A |
C12 |
H12B |
109.5 |
109.5 |
| C14 |
C13 |
C31 |
117.2 |
120.1 |
| C13 |
C31 |
H31 |
119.7 |
120.1 |
| C15 |
C14 |
H14 |
117.5 |
120.0 |
| C16 |
C15 |
H15 |
119.1 |
120.0 |
| C16 |
N17 |
N18 |
115.5 |
120.2 |
| N17 |
N18 |
C19 |
121.5 |
120.0 |
| N18 |
C19 |
C25 |
118.5 |
119.7 |
| N18 |
C19 |
H19 |
120.7 |
120.2 |
| C25 |
C19 |
H19 |
120.7 |
120.1 |
| C19 |
C25 |
C24 |
119.7 |
119.6 |
| C19 |
C25 |
C26 |
120.1 |
120.8 |
| C21 |
C20 |
C24 |
96.1 |
109.6 |
| C21 |
C20 |
H20 |
115.2 |
109.7 |
| C24 |
C20 |
H20 |
118.9 |
109.6 |
| C20 |
C24 |
C29 |
118.7 |
120.7 |
| C20 |
C24 |
C25 |
118.9 |
119.3 |
| C22 |
C21 |
H21 |
110.4 |
109.5 |
| C22 |
C21 |
H21A |
111.1 |
109.5 |
| H21 |
C21 |
H21A |
107.2 |
109.5 |
| C23 |
C22 |
H22 |
110.7 |
109.5 |
| C23 |
C22 |
H22A |
111.5 |
109.4 |
| H22 |
C22 |
H22A |
106.6 |
109.4 |
| H23 |
C23 |
H23A |
109.5 |
109.4 |
| H23 |
C23 |
H23B |
109.4 |
109.4 |
| H23A |
C23 |
H23B |
109.5 |
109.5 |
| C25 |
C24 |
C29 |
122.4 |
120.0 |
| C24 |
C29 |
C28 |
117.0 |
120.3 |
| C24 |
C29 |
H29 |
121.5 |
120.1 |
| C24 |
C25 |
C26 |
120.2 |
119.6 |
| C25 |
C26 |
C27 |
117.3 |
119.7 |
| C25 |
C26 |
H26 |
121.4 |
120.2 |
| C27 |
C26 |
H26 |
121.3 |
120.2 |
| C26 |
C27 |
H27 |
119.1 |
119.9 |
| C28 |
C27 |
H27 |
119.0 |
119.8 |
| C29 |
C28 |
H28 |
119.4 |
120.1 |
| N33 |
C32 |
H32 |
120.4 |
120.3 |
| N33 |
C34 |
N36 |
117.7 |
121.7 |
| N35 |
C34 |
N36 |
120.9 |
119.1 |
| HN35 |
N35 |
HN3A |
109.5 |
120.0 |
Torsion Angles for RAR
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| HN01 |
N01 |
C02 |
HN0A |
240.0 |
180.2 |
| C02 |
N01 |
HN01 |
HN0A |
120.0 |
179.8 |
| C02 |
N01 |
HN0A |
HN01 |
240.0 |
180.2 |
| C03 |
C02 |
N01 |
HN01 |
356.4 |
359.9 |
| C03 |
C02 |
N01 |
HN0A |
116.3 |
179.7 |
| N36 |
C02 |
N01 |
HN01 |
176.9 |
179.7 |
| N36 |
C02 |
N01 |
HN0A |
296.8 |
359.5 |
| C32 |
C03 |
C04 |
H04 |
137.1 |
25.1 |
| C32 |
C03 |
C04 |
H04A |
258.9 |
145.0 |
| C05 |
C04 |
C03 |
H04 |
240.0 |
240.0 |
| C05 |
C04 |
C03 |
H04A |
118.2 |
120.1 |
| H04 |
C04 |
C03 |
H04A |
238.2 |
240.1 |
| C03 |
C04 |
C05 |
H04 |
120.0 |
120.0 |
| C03 |
C04 |
C05 |
H04A |
241.8 |
239.9 |
| H04 |
C04 |
C05 |
H04A |
121.8 |
119.9 |
| C03 |
C04 |
H04 |
H04A |
118.3 |
120.0 |
| C05 |
C04 |
H04 |
H04A |
241.7 |
240.0 |
| C03 |
C04 |
H04A |
H04 |
241.1 |
240.0 |
| C05 |
C04 |
H04A |
H04 |
118.9 |
120.0 |
| C06 |
C05 |
C04 |
H04 |
118.4 |
330.0 |
| C06 |
C05 |
C04 |
H04A |
356.6 |
210.1 |
| C31 |
C05 |
C04 |
H04 |
298.2 |
149.7 |
| C31 |
C05 |
C04 |
H04A |
176.4 |
29.8 |
| O08 |
C07 |
C06 |
H06 |
359.0 |
360.0 |
| C10 |
C07 |
C06 |
H06 |
180.3 |
180.0 |
| H09 |
C09 |
O08 |
H09A |
240.0 |
240.0 |
| H09 |
C09 |
O08 |
H09B |
120.0 |
120.0 |
| H09A |
C09 |
O08 |
H09B |
240.0 |
240.0 |
| O08 |
C09 |
H09 |
H09A |
120.0 |
120.0 |
| O08 |
C09 |
H09 |
H09B |
240.0 |
240.0 |
| H09A |
C09 |
H09 |
H09B |
120.0 |
120.0 |
| O08 |
C09 |
H09A |
H09 |
240.0 |
240.0 |
| O08 |
C09 |
H09A |
H09B |
120.0 |
120.0 |
| H09 |
C09 |
H09A |
H09B |
240.0 |
240.0 |
| O08 |
C09 |
H09B |
H09 |
120.0 |
120.0 |
| O08 |
C09 |
H09B |
H09A |
240.0 |
240.0 |
| H09 |
C09 |
H09B |
H09A |
120.0 |
120.0 |
| O11 |
C10 |
C13 |
C31 |
179.6 |
179.8 |
| C14 |
C13 |
C10 |
C31 |
180.8 |
180.2 |
| C10 |
C13 |
C31 |
H31 |
180.1 |
180.0 |
| C12 |
O11 |
C10 |
C13 |
239.2 |
270.0 |
| H12A |
C12 |
H12 |
H12B |
120.0 |
120.1 |
| H12 |
C12 |
H12A |
H12B |
240.1 |
239.9 |
| H12 |
C12 |
H12B |
H12A |
120.0 |
120.1 |
| C10 |
C13 |
C14 |
C31 |
179.2 |
179.8 |
| C14 |
C13 |
C31 |
H31 |
359.4 |
359.8 |
| C15 |
C14 |
C13 |
C31 |
190.1 |
0.2 |
| H14 |
C14 |
C13 |
C31 |
10.1 |
180.2 |
| C16 |
C15 |
C14 |
H14 |
355.4 |
0.1 |
| H15 |
C15 |
C14 |
H14 |
175.4 |
180.0 |
| O30 |
C16 |
C15 |
H15 |
359.8 |
180.0 |
| N17 |
C16 |
C15 |
H15 |
175.2 |
0.1 |
| C16 |
N17 |
N18 |
C19 |
157.2 |
148.1 |
| N17 |
N18 |
C19 |
C25 |
358.0 |
1.3 |
| N17 |
N18 |
C19 |
H19 |
178.0 |
181.4 |
| C25 |
C19 |
N18 |
H19 |
180.0 |
179.9 |
| N18 |
C19 |
C25 |
C24 |
14.0 |
13.5 |
| N18 |
C19 |
C25 |
C26 |
193.4 |
193.9 |
| N18 |
C19 |
C25 |
H19 |
180.0 |
180.1 |
| C20 |
C24 |
C25 |
C19 |
360.0 |
1.3 |
| C19 |
C25 |
C24 |
C29 |
179.4 |
181.1 |
| C24 |
C25 |
C19 |
C26 |
180.5 |
179.7 |
| C19 |
C25 |
C26 |
C27 |
180.5 |
179.3 |
| C19 |
C25 |
C26 |
H26 |
0.5 |
359.4 |
| N18 |
C19 |
H19 |
C25 |
180.0 |
179.9 |
| H19 |
C19 |
C25 |
C24 |
194.0 |
193.4 |
| H19 |
C19 |
C25 |
C26 |
13.4 |
13.8 |
| C24 |
C20 |
C21 |
H20 |
126.0 |
120.4 |
| C21 |
C20 |
C24 |
C29 |
276.5 |
273.2 |
| C21 |
C20 |
C24 |
C25 |
96.0 |
92.9 |
| C19 |
C25 |
C24 |
C20 |
360.0 |
1.3 |
| C21 |
C20 |
C24 |
H20 |
236.7 |
239.5 |
| C25 |
C24 |
C20 |
C29 |
179.5 |
179.8 |
| C20 |
C24 |
C29 |
C28 |
179.5 |
178.9 |
| C20 |
C24 |
C29 |
H29 |
359.5 |
359.3 |
| C20 |
C24 |
C25 |
C26 |
180.5 |
181.0 |
| C21 |
C20 |
H20 |
C24 |
113.2 |
120.4 |
| H20 |
C20 |
C24 |
C29 |
39.8 |
33.7 |
| H20 |
C20 |
C24 |
C25 |
219.3 |
213.4 |
| C22 |
C21 |
C20 |
C24 |
106.0 |
175.9 |
| C22 |
C21 |
C20 |
H20 |
340.1 |
55.5 |
| H21 |
C21 |
C22 |
H21A |
118.8 |
120.0 |
| H21 |
C21 |
C20 |
C24 |
226.0 |
295.9 |
| H21 |
C21 |
C20 |
H20 |
100.0 |
175.5 |
| C22 |
C21 |
H21 |
H21A |
238.8 |
240.0 |
| H21A |
C21 |
C20 |
C24 |
344.8 |
55.9 |
| H21A |
C21 |
C20 |
H20 |
218.9 |
295.5 |
| C22 |
C21 |
H21A |
H21 |
120.8 |
120.0 |
| C23 |
C22 |
C21 |
H21 |
325.3 |
60.0 |
| C23 |
C22 |
C21 |
H21A |
206.4 |
300.0 |
| H22 |
C22 |
C23 |
H22A |
118.6 |
119.9 |
| H22 |
C22 |
C21 |
H21 |
85.2 |
180.0 |
| H22 |
C22 |
C21 |
H21A |
326.4 |
60.0 |
| C23 |
C22 |
H22 |
H22A |
238.5 |
240.1 |
| H22A |
C22 |
C21 |
H21 |
203.8 |
300.0 |
| H22A |
C22 |
C21 |
H21A |
85.0 |
180.0 |
| C23 |
C22 |
H22A |
H22 |
121.0 |
120.0 |
| H23 |
C23 |
C22 |
H22 |
234.8 |
60.0 |
| H23 |
C23 |
C22 |
H22A |
116.2 |
300.0 |
| H23A |
C23 |
H23 |
H23B |
120.0 |
120.0 |
| H23A |
C23 |
C22 |
H22 |
354.8 |
180.0 |
| H23A |
C23 |
C22 |
H22A |
236.2 |
60.0 |
| H23 |
C23 |
H23A |
H23B |
240.0 |
240.1 |
| H23B |
C23 |
C22 |
H22 |
114.8 |
300.0 |
| H23B |
C23 |
C22 |
H22A |
356.2 |
180.1 |
| H23 |
C23 |
H23B |
H23A |
120.0 |
119.9 |
| C29 |
C24 |
C20 |
H20 |
39.8 |
33.7 |
| C20 |
C24 |
C29 |
C25 |
179.4 |
179.8 |
| C29 |
C24 |
C25 |
C26 |
359.9 |
0.8 |
| C24 |
C29 |
C28 |
H28 |
180.0 |
180.1 |
| C24 |
C25 |
C19 |
H19 |
194.0 |
193.4 |
| C19 |
C25 |
C24 |
C26 |
179.5 |
180.3 |
| C25 |
C24 |
C20 |
H20 |
219.3 |
213.4 |
| C20 |
C24 |
C25 |
C29 |
180.6 |
180.2 |
| C25 |
C24 |
C29 |
C28 |
0.1 |
359.1 |
| C25 |
C24 |
C29 |
H29 |
180.1 |
179.5 |
| C24 |
C25 |
C26 |
C27 |
360.0 |
359.6 |
| C24 |
C25 |
C26 |
H26 |
180.0 |
179.7 |
| C26 |
C25 |
C19 |
H19 |
13.4 |
13.8 |
| C19 |
C25 |
C26 |
C24 |
180.5 |
179.7 |
| C26 |
C25 |
C24 |
C29 |
359.9 |
0.8 |
| C27 |
C26 |
C25 |
H26 |
180.0 |
179.9 |
| C25 |
C26 |
C27 |
H27 |
180.1 |
180.0 |
| C25 |
C26 |
C27 |
H26 |
180.0 |
180.1 |
| C28 |
C27 |
C26 |
H27 |
180.0 |
180.0 |
| C25 |
C26 |
H26 |
C27 |
180.0 |
179.9 |
| H26 |
C26 |
C27 |
H27 |
0.1 |
359.9 |
| C24 |
C29 |
C28 |
C27 |
0.1 |
0.6 |
| C28 |
C27 |
C26 |
H26 |
180.1 |
180.0 |
| C26 |
C27 |
C28 |
H27 |
180.0 |
180.0 |
| H27 |
C27 |
C26 |
H26 |
0.1 |
359.9 |
| C24 |
C29 |
C28 |
H29 |
180.0 |
180.4 |
| C29 |
C28 |
C27 |
H27 |
179.9 |
179.9 |
| H28 |
C28 |
C27 |
H27 |
359.9 |
0.4 |
| C24 |
C29 |
H29 |
C28 |
180.0 |
179.6 |
| H29 |
C29 |
C28 |
H28 |
0.0 |
359.7 |
| C34 |
N33 |
C32 |
H32 |
179.9 |
180.0 |
| N35 |
C34 |
N33 |
N36 |
178.9 |
180.2 |
| N33 |
C34 |
N35 |
N36 |
181.2 |
179.8 |
| HN35 |
N35 |
C34 |
N36 |
15.5 |
180.2 |
| HN3A |
N35 |
C34 |
N36 |
135.6 |
0.3 |