PDB Chemical Component RAF

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for RAF

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O6' C6' 1.463 1.429
C6' C5' 1.510 1.530
C5' O2' 1.586 1.443
C5' C4' 1.373 1.550
C4' O4' 1.435 1.429
C4' C3' 1.611 1.548
C3' C2' 1.387 1.541
C3' O3' 1.413 1.429
O2' C2' 1.435 1.438
C2' C1' 1.481 1.530
C2' O1 1.500 1.429
C1' O1' 1.431 1.429
O1 C1 1.438 1.429
C1 O5 1.459 1.429
C1 C2 1.508 1.531
C2 O2 1.462 1.430
C2 C3 1.478 1.531
C3 O3 1.474 1.430
C3 C4 1.491 1.531
C4 C5 1.510 1.531
C4 O4 1.429 1.429
C5 O5 1.444 1.429
C5 C6 1.513 1.529
C6 O6 1.431 1.429
O6 C1X 1.415 1.430
C1X O5X 1.457 1.430
C1X C2X 1.501 1.531
O5X C5X 1.472 1.429
C5X C6X 1.498 1.530
C5X C4X 1.518 1.531
C6X O6X 1.407 1.429
C4X O4X 1.431 1.429
C4X C3X 1.496 1.531
C3X O3X 1.447 1.429
C3X C2X 1.502 1.532
C2X O2X 1.435 1.429
O6' HO6' 0.949 0.967
C6' H6' 1.100 1.090
C6' H6'A 1.101 1.090
C5' H5' 1.100 1.090
C4' H4' 1.100 1.090
O4' HO4' 0.950 0.967
C3' H3' 1.100 1.090
O3' HO3' 0.950 0.967
C1' H1' 1.100 1.090
C1' H1'A 1.100 1.090
O1' HO1' 0.950 0.967
C1 H1 1.101 1.090
C2 H2 1.100 1.091
O2 HO2 0.950 0.966
C3 H3 1.100 1.091
O3 HO3 0.950 0.967
C4 H4 1.100 1.090
O4 HO4 0.950 0.967
C5 H5 1.100 1.091
C6 H6A 1.100 1.089
C6 H6 1.100 1.091
C1X H1X 1.100 1.090
C5X H5X 1.100 1.091
C6X H6XA 1.100 1.091
C6X H6X 1.100 1.090
O6X HO6X 0.950 0.967
C4X H4X 1.100 1.090
O4X HO4X 0.950 0.966
C3X H3X 1.100 1.090
O3X HO3X 0.950 0.968
C2X H2X 1.100 1.089
O2X HO2X 0.950 0.967

Bond Angles for RAF

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O6' C6' H6' 110.0 109.5
O6' C6' H6'A 110.0 109.5
C6' C5' O2' 108.8 110.6
C6' C5' H5' 108.6 110.6
O2' C5' H5' 107.7 110.6
C5' C4' O4' 112.2 110.9
C5' C4' H4' 111.7 110.9
O4' C4' H4' 110.7 110.8
C4' O4' HO4' 109.5 114.0
C4' C3' O3' 112.6 110.5
C4' C3' H3' 106.2 110.5
C3' C2' O1 102.5 109.9
O3' C3' H3' 108.6 110.5
C3' O3' HO3' 109.5 114.0
C2' C1' O1' 102.1 109.5
C2' C1' H1' 111.3 109.5
C2' C1' H1'A 111.3 109.5
C2' O1 C1 121.6 114.0
O1' C1' H1' 111.3 109.5
O1' C1' H1'A 111.3 109.5
C1' O1' HO1' 109.5 114.0
O1 C1 O5 111.2 109.5
O1 C1 C2 109.5 109.5
O1 C1 H1 110.1 109.5
C2 C1 O5 107.0 109.4
C1 O5 C5 117.3 114.1
O5 C1 H1 109.8 109.5
C1 C2 O2 108.7 109.5
C1 C2 C3 108.6 109.2
C2 C1 H1 109.2 109.5
C1 C2 H2 109.0 109.5
C3 C2 O2 111.6 109.6
O2 C2 H2 109.6 109.5
C2 O2 HO2 109.5 114.0
C2 C3 O3 111.5 109.6
C2 C3 C4 110.1 109.1
C3 C2 H2 109.4 109.6
C2 C3 H3 109.5 109.5
C4 C3 O3 106.8 109.6
O3 C3 H3 109.6 109.5
C3 O3 HO3 109.5 114.0
C3 C4 C5 112.6 109.2
C3 C4 O4 109.0 109.6
C4 C3 H3 109.3 109.6
C3 C4 H4 109.5 109.5
C5 C4 O4 106.1 109.5
C4 C5 O5 111.7 109.4
C4 C5 C6 109.2 109.5
C5 C4 H4 109.3 109.5
C4 C5 H5 109.8 109.4
O4 C4 H4 110.4 109.6
C4 O4 HO4 109.5 114.0
C6 C5 O5 105.5 109.5
O5 C5 H5 110.8 109.5
C5 C6 O6 111.4 109.5
C6 C5 H5 109.8 109.5
C5 C6 H6A 109.0 109.5
C5 C6 H6 109.0 109.5
C6 O6 C1X 112.8 114.0
O6 C6 H6A 109.0 109.5
O6 C6 H6 109.0 109.5
O6 C1X O5X 110.6 109.5
O6 C1X C2X 111.2 109.5
O6 C1X H1X 108.9 109.5
C2X C1X O5X 110.0 109.4
C1X O5X C5X 113.4 114.1
O5X C1X H1X 108.3 109.5
C1X C2X O2X 109.4 109.5
C2X C1X H1X 107.8 109.5
C1X C2X H2X 109.1 109.5
O5X C5X H5X 108.1 109.5
C5X C6X O6X 112.4 109.5
C6X C5X H5X 107.8 109.4
C5X C6X H6XA 108.7 109.5
C5X C6X H6X 108.7 109.4
C5X C4X O4X 107.0 109.5
C5X C4X H4X 108.8 109.5
O6X C6X H6XA 108.7 109.5
O6X C6X H6X 108.7 109.5
C6X O6X HO6X 109.5 114.0
O4X C4X H4X 110.0 109.5
C4X O4X HO4X 109.5 114.0
C4X C3X O3X 110.3 109.5
C4X C3X H3X 109.1 109.6
O3X C3X H3X 109.7 109.5
C3X O3X HO3X 109.5 114.0
C3X C2X O2X 110.2 109.5
C3X C2X H2X 109.0 109.5
O2X C2X H2X 110.0 109.6
C2X O2X HO2X 109.5 114.0
H6' C6' H6'A 109.5 109.5
H1' C1' H1'A 109.5 109.4
H6 C6 H6A 109.5 109.4
H6X C6X H6XA 109.5 109.5

Torsion Angles for RAF

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O6' C6' C5' H5' 308.0 298.8
H6' C6' O6' H6'A 239.3 240.0
O2' C5' C6' H5' 117.0 122.9
C6' C5' C4' O4' 92.5 86.2
C6' C5' C4' H4' 327.5 322.7
C6' C5' O2' H5' 242.4 237.1
O2' C5' C4' O4' 212.7 204.8
O2' C5' C4' H4' 87.7 81.2
O4' C4' C5' H4' 125.0 123.5
C5' C4' O4' HO4' 180.0 298.5
C5' C4' C3' O3' 164.4 139.5
C5' C4' C3' H3' 283.1 262.2
C5' C4' O4' H4' 234.4 236.4
O4' C4' C3' O3' 284.4 257.7
O4' C4' C3' H3' 43.1 20.4
C4' C3' C2' O1 74.5 121.5
O3' C3' C4' H3' 241.2 237.4
C4' C3' O3' HO3' 180.0 61.4
C3' C2' C1' O1' 57.8 173.8
C3' C2' C1' H1' 176.6 293.9
C3' C2' C1' H1'A 299.1 53.8
C3' C2' O1 C1 187.9 188.8
C4' C3' O3' H3' 117.4 122.6
O3' C3' C2' O1 310.3 2.8
O2' C2' C1' H1' 43.2 176.0
O2' C2' C1' H1'A 165.6 296.0
O2' C2' O1 C1 299.0 306.6
O1' C1' C2' H1' 241.2 240.0
O1' C1' C2' H1'A 118.8 120.1
C2' C1' O1' HO1' 180.0 180.0
H1' C1' C2' H1'A 237.6 240.1
O1 C2' C1' O1' 175.8 294.9
O1 C2' C1' H1' 294.6 55.0
O1 C2' C1' H1'A 57.0 174.9
C2' O1 C1 O5 108.9 91.1
C2' O1 C1 C2 226.9 211.0
C2' O1 C1 H1 346.9 331.1
C2' C1' O1' H1' 118.8 120.0
C2' C1' O1' H1'A 241.2 240.0
H1' C1' O1' H1'A 122.4 120.0
C2 C1 O1 O5 118.0 119.9
O1 C1 O5 C5 63.3 58.8
O5 C1 O1 H1 121.9 120.0
O1 C1 C2 O2 63.4 57.6
O1 C1 C2 C3 301.8 297.6
C2 C1 O1 H1 239.9 239.9
O1 C1 C2 H2 182.7 177.6
O1 C1 O5 C2 119.6 120.0
O1 C1 O5 H1 237.9 239.9
O5 C1 C2 O2 184.0 177.5
O5 C1 C2 C3 62.4 57.6
C2 C1 O5 H1 118.3 120.0
O5 C1 C2 H2 303.3 297.6
C4 C5 O5 C1 47.3 61.1
C6 C5 O5 C1 165.8 181.2
C1 O5 C5 H5 284.5 301.2
O1 C1 C2 O5 239.4 240.0
O1 C1 C2 H1 120.6 120.1
C2 C1 O5 C5 303.8 298.8
O5 C1 C2 H1 241.3 240.1
C3 C2 C1 O2 238.4 240.0
O2 C2 C1 H2 240.6 239.9
C1 C2 O2 HO2 180.0 60.0
C1 C2 C3 O3 178.2 183.1
C1 C2 C3 C4 296.6 303.1
C3 C2 C1 H2 119.1 120.0
C1 C2 C3 H3 56.8 63.0
O2 C2 C1 O5 184.0 177.5
C1 C2 O2 C3 240.2 240.3
O2 C2 C1 H1 302.7 297.5
C1 C2 O2 H2 119.0 120.1
O2 C2 C3 O3 58.4 63.2
O2 C2 C3 C4 176.8 183.1
C3 C2 O2 H2 238.7 239.8
O2 C2 C3 H3 297.0 303.0
C3 C2 C1 O5 62.4 57.6
C1 C2 C3 O2 119.8 120.0
C3 C2 C1 H1 181.2 177.5
C1 C2 C3 H2 241.2 240.0
O2 C2 C3 H2 121.4 120.1
C3 C2 O2 HO2 299.7 179.7
C4 C3 C2 O3 118.4 119.9
O3 C3 C2 H3 121.4 120.2
C2 C3 O3 HO3 180.0 300.1
C2 C3 C4 C5 53.7 56.9
C2 C3 C4 O4 171.2 176.9
C4 C3 C2 H3 239.8 240.1
C2 C3 C4 H4 292.0 297.1
O3 C3 C2 O2 58.4 63.2
C2 C3 O3 C4 120.4 119.6
O3 C3 C2 H2 297.0 303.1
C2 C3 O3 H3 238.7 239.9
O3 C3 C4 C5 174.9 176.9
O3 C3 C4 O4 292.4 296.8
C4 C3 O3 H3 118.3 120.2
O3 C3 C4 H4 53.2 57.0
C4 C3 C2 O2 176.8 183.1
C2 C3 C4 O3 238.8 240.0
C4 C3 C2 H2 55.4 63.0
C2 C3 C4 H3 120.3 119.9
O3 C3 C4 H3 241.5 239.8
C4 C3 O3 HO3 59.6 180.4
C5 C4 C3 O4 242.6 240.0
C3 C4 C5 O5 316.0 302.5
C3 C4 C5 C6 199.7 182.4
C5 C4 C3 H4 121.8 119.9
C3 C4 C5 H5 79.3 62.4
O4 C4 C3 H4 239.2 239.8
C3 C4 O4 HO4 180.0 59.9
C1 O5 C5 C4 47.3 61.1
C5 C4 C3 O3 174.9 176.9
C3 C4 C5 O4 119.1 120.0
C5 C4 C3 H3 293.4 297.1
C3 C4 C5 H4 238.1 240.2
O4 C4 C5 H4 119.0 120.2
C5 C4 O4 HO4 301.4 179.6
C6 C5 C4 O5 243.7 239.9
O5 C5 C4 H5 236.7 240.1
C4 C5 C6 O6 196.6 182.6
C6 C5 C4 H5 120.4 120.0
C4 C5 C6 H6A 316.9 302.7
C4 C5 C6 H6 76.3 62.6
O4 C4 C3 O3 292.4 296.8
C3 C4 O4 C5 238.5 240.2
O4 C4 C3 H3 50.8 57.0
C3 C4 O4 H4 120.3 120.1
O4 C4 C5 O5 196.9 182.5
O4 C4 C5 C6 80.6 62.4
C5 C4 O4 H4 241.7 239.9
O4 C4 C5 H5 320.2 302.4
C5 O5 C1 H1 185.4 178.9
O5 C5 C4 O4 196.9 182.5
C4 C5 O5 C6 241.5 240.0
O5 C5 C4 H4 77.9 62.3
C4 C5 O5 H5 122.8 119.9
O5 C5 C6 O6 76.4 62.6
C6 C5 O5 H5 241.3 240.0
O5 C5 C6 H6A 196.7 182.7
O5 C5 C6 H6 316.1 302.7
C1 O5 C5 C6 165.8 181.2
C6 C5 C4 O4 80.6 62.4
C4 C5 C6 O5 120.2 120.0
C6 C5 C4 H4 321.6 302.3
C4 C5 C6 H5 239.6 240.0
O5 C5 C6 H5 119.4 120.0
C5 C6 O6 C1X 196.5 173.7
O6 C6 C5 H6A 239.7 240.0
O6 C6 C5 H6 120.3 120.0
H6 C6 C5 H6A 119.4 120.0
O6 C6 C5 O5 76.4 62.6
O6 C6 C5 H5 317.0 302.6
C5 C6 O6 H6A 120.3 120.1
C5 C6 O6 H6 239.7 240.0
C6 O6 C1X O5X 69.3 66.6
C6 O6 C1X C2X 191.8 186.5
C6 O6 C1X H1X 310.4 306.5
H6 C6 O6 H6A 240.6 240.1
C1X O6 C6 H6A 76.2 53.6
C1X O6 C6 H6 316.8 293.7
C2X C1X O6 O5X 122.5 119.9
O6 C1X O5X C5X 65.7 58.8
O5X C1X O6 H1X 118.9 120.0
O6 C1X C2X O2X 57.7 57.5
C2X C1X O6 H1X 241.4 240.0
O6 C1X C2X H2X 177.9 177.7
O6 C1X O5X C2X 123.2 120.0
O6 C1X O5X H1X 240.8 240.0
O5X C1X C2X O2X 180.5 177.5
C2X C1X O5X H1X 117.6 120.0
O5X C1X C2X H2X 300.7 297.7
C1X O5X C5X H5X 294.5 301.1
O6 C1X C2X O5X 237.2 240.0
O6 C1X C2X H1X 119.3 120.0
C2X C1X O5X C5X 302.5 298.9
O5X C1X C2X H1X 242.1 240.0
C3X C2X C1X O2X 239.3 240.1
C3X C2X C1X H2X 119.1 119.9
O2X C2X C1X H2X 239.7 239.8
C1X C2X O2X HO2X 180.0 60.1
C5X O5X C1X H1X 184.9 178.8
O5X C5X C6X O6X 300.5 65.0
C6X C5X O5X H5X 244.8 240.1
O5X C5X C6X H6XA 60.9 185.0
O5X C5X C6X H6X 180.0 304.9
O5X C5X C4X H4X 189.7 182.4
C1X O5X C5X C6X 179.3 181.2
O5X C5X C6X H5X 115.4 120.0
C6X C5X C4X O4X 310.0 302.3
C6X C5X C4X H4X 68.8 62.4
O6X C6X C5X H6XA 239.6 240.0
O6X C6X C5X H6X 120.4 120.0
C5X C6X O6X HO6X 180.0 180.0
H6X C6X C5X H6XA 119.1 120.0
C1X O5X C5X C4X 52.8 61.1
O4X C4X C5X H4X 241.3 239.9
C5X C4X O4X HO4X 180.0 180.0
C5X C4X C3X O3X 174.0 176.9
C5X C4X C3X H3X 294.6 297.0
O6X C6X C5X H5X 185.1 305.0
C5X C6X O6X H6XA 120.4 120.0
C5X C6X O6X H6X 239.6 240.0
H6X C6X O6X H6XA 240.9 240.0
C5X C4X O4X H4X 117.9 120.1
O4X C4X C3X O3X 55.1 56.9
O4X C4X C3X H3X 175.7 177.1
O3X C3X C4X H3X 239.4 239.8
C4X C3X O3X HO3X 180.0 184.4
C4X C3X C2X O2X 180.5 183.1
C4X C3X C2X H2X 59.7 62.9
C4X C3X O3X H3X 120.2 120.2
O3X C3X C2X O2X 59.6 63.3
O3X C3X C2X H2X 298.8 303.0
C3X C2X C1X O5X 59.8 57.6
C1X C2X C3X O2X 120.1 119.9
C3X C2X C1X H1X 177.7 177.6
C1X C2X C3X H2X 240.9 240.1
O2X C2X C3X H2X 120.8 120.3
C3X C2X O2X HO2X 300.0 179.7
O2X C2X C1X O5X 180.5 177.5
O2X C2X C1X H1X 298.3 297.5
C1X C2X O2X H2X 119.7 120.2
C3X C2X O2X H2X 239.8 239.8
HO6' O6' C6' H6' 299.7 294.1
HO6' O6' C6' H6'A 60.3 54.1
O6' C6' H6' H6'A 121.0 120.0
H6' C6' C5' O2' 305.3 301.7
H6' C6' C5' H5' 188.3 178.8
O6' C6' H6'A H6' 239.0 240.0
H6'A C6' C5' O2' 184.6 181.8
H6'A C6' C5' H5' 67.6 58.9
C6' C5' H5' O2' 117.7 122.9
H5' C5' C4' O4' 329.0 323.3
H5' C5' C4' H4' 204.0 199.8
C5' C4' H4' O4' 125.8 123.6
H4' C4' O4' HO4' 305.6 62.1
H4' C4' C3' O3' 46.1 21.3
H4' C4' C3' H3' 164.9 144.0
HO4' O4' C4' H4' 305.6 62.1
C4' C3' H3' O3' 238.6 237.4
H3' C3' C2' O1 187.5 240.2
H3' C3' O3' HO3' 62.6 298.8
HO3' O3' C3' H3' 62.6 298.8
C2' C1' H1' O1' 246.9 240.0
C2' C1' H1' H1'A 123.4 119.9
O1' C1' H1' H1'A 236.5 240.0
H1' C1' O1' HO1' 61.2 60.0
C2' C1' H1'A O1' 113.1 120.0
C2' C1' H1'A H1' 236.6 240.1
O1' C1' H1'A H1' 123.5 120.0
H1'A C1' O1' HO1' 298.8 300.0
HO1' O1' C1' H1' 61.2 60.0
HO1' O1' C1' H1'A 298.8 300.0
O1 C1 H1 O5 122.8 120.0
O1 C1 H1 C2 239.7 239.9
C2 C1 H1 O5 243.0 240.1
H1 C1 O5 C5 185.4 178.9
H1 C1 C2 O2 302.7 297.5
H1 C1 C2 C3 181.2 177.5
H1 C1 C2 H2 62.1 57.5
H2 C2 C1 O5 303.3 297.6
C1 C2 H2 O2 241.2 239.9
C1 C2 H2 C3 118.6 119.8
H2 C2 C1 H1 62.1 57.5
C3 C2 H2 O2 122.6 120.1
H2 C2 O2 HO2 61.0 299.9
H2 C2 C3 O3 297.0 303.1
H2 C2 C3 C4 55.4 63.0
H2 C2 C3 H3 175.6 182.9
HO2 O2 C2 H2 61.0 299.9
H3 C3 C2 O2 297.0 303.0
C2 C3 H3 O3 122.5 120.2
C2 C3 H3 C4 239.3 240.4
H3 C3 C2 H2 175.6 182.9
C4 C3 H3 O3 243.2 239.8
H3 C3 O3 HO3 301.3 60.2
H3 C3 C4 C5 293.4 297.1
H3 C3 C4 O4 50.8 57.0
H3 C3 C4 H4 171.6 177.2
HO3 O3 C3 H3 301.3 60.2
H4 C4 C3 O3 53.2 57.0
C3 C4 H4 C5 123.8 119.7
C3 C4 H4 O4 240.0 239.8
H4 C4 C3 H3 171.6 177.2
C5 C4 H4 O4 116.3 120.1
H4 C4 C5 O5 77.9 62.3
H4 C4 C5 C6 321.6 302.3
H4 C4 C5 H5 201.2 182.3
H4 C4 O4 HO4 59.7 299.8
HO4 O4 C4 H4 59.7 299.8
H5 C5 C4 O4 320.2 302.4
C4 C5 H5 O5 236.1 240.1
C4 C5 H5 C6 120.0 120.0
H5 C5 C4 H4 201.2 182.3
C6 C5 H5 O5 116.1 120.1
H5 C5 C6 O6 317.0 302.6
H5 C5 C6 H6A 77.3 62.6
H5 C5 C6 H6 196.7 182.6
H6A C6 C5 O5 196.7 182.7
C5 C6 H6A O6 238.2 240.0
H6A C6 C5 H5 77.3 62.6
C5 C6 H6A H6 119.1 120.0
H6A C6 O6 C1X 76.2 53.6
O6 C6 H6A H6 240.9 240.0
H6 C6 C5 O5 316.1 302.7
C5 C6 H6 O6 121.8 120.0
H6 C6 C5 H5 196.7 182.6
C5 C6 H6 H6A 240.9 240.0
H6 C6 O6 C1X 316.8 293.7
O6 C6 H6 H6A 119.1 120.0
O6 C1X H1X O5X 120.3 120.0
O6 C1X H1X C2X 239.2 240.0
C2X C1X H1X O5X 241.1 240.0
H1X C1X O5X C5X 184.9 178.8
H1X C1X C2X O2X 298.3 297.5
H1X C1X C2X H2X 58.6 57.7
H5X C5X C6X O6X 185.1 305.0
H5X C5X C6X H6XA 305.5 65.0
H5X C5X C6X H6X 64.7 185.0
H5X C5X C4X O4X 189.5 182.3
H5X C5X C4X H4X 308.3 302.4
C5X C6X H6XA O6X 237.3 240.0
H6XA C6X C5X H5X 305.5 65.0
C5X C6X H6XA H6X 118.7 120.0
O6X C6X H6XA H6X 241.4 240.0
H6XA C6X O6X HO6X 59.5 60.0
C5X C6X H6X O6X 122.7 120.0
H6X C6X C5X H5X 64.7 185.0
C5X C6X H6X H6XA 241.3 240.0
O6X C6X H6X H6XA 118.7 120.0
H6X C6X O6X HO6X 300.4 300.0
HO6X O6X C6X H6XA 59.5 60.0
HO6X O6X C6X H6X 300.4 300.0
C5X C4X H4X O4X 243.2 239.9
H4X C4X O4X HO4X 62.1 59.9
H4X C4X C3X O3X 293.7 296.8
H4X C4X C3X H3X 54.3 57.0
HO4X O4X C4X H4X 62.1 59.9
C4X C3X H3X O3X 239.0 239.8
H3X C3X O3X HO3X 59.8 64.2
H3X C3X C2X O2X 300.6 303.1
H3X C3X C2X H2X 179.8 182.8
HO3X O3X C3X H3X 59.8 64.2
H2X C2X C1X O5X 300.7 297.7
C1X C2X H2X O2X 240.1 239.8
H2X C2X C1X H1X 58.6 57.7
C3X C2X H2X O2X 120.9 120.2
H2X C2X O2X HO2X 60.2 299.9
HO2X O2X C2X H2X 60.2 299.9