PDB Chemical Component RAB
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for RAB
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O5' |
C5' |
1.434 |
1.429 |
| O5' |
H5' |
0.950 |
0.967 |
| C5' |
C4' |
1.516 |
1.529 |
| C5' |
H5'1 |
1.115 |
1.090 |
| C5' |
H5'2 |
1.115 |
1.090 |
| C4' |
O4' |
1.435 |
1.445 |
| C4' |
C3' |
1.492 |
1.544 |
| C4' |
H4' |
1.115 |
1.090 |
| O4' |
C1' |
1.430 |
1.444 |
| C1' |
N9 |
1.645 |
1.465 |
| C1' |
C2' |
1.513 |
1.545 |
| C1' |
H1' |
1.115 |
1.090 |
| N9 |
C4 |
1.393 |
1.372 |
| N9 |
C8 |
1.355 |
1.363 |
| C4 |
N3 |
1.378 |
1.329 |
| C4 |
C5 |
1.393 |
1.405 |
| N3 |
C2 |
1.348 |
1.316 |
| C2 |
N1 |
1.359 |
1.320 |
| C2 |
H2 |
1.102 |
1.081 |
| N1 |
C6 |
1.379 |
1.329 |
| C6 |
N6 |
1.333 |
1.384 |
| C6 |
C5 |
1.439 |
1.405 |
| N6 |
HN61 |
1.020 |
0.970 |
| N6 |
HN62 |
1.020 |
0.970 |
| C5 |
N7 |
1.403 |
1.355 |
| N7 |
C8 |
1.304 |
1.301 |
| C8 |
H8 |
1.103 |
1.080 |
| C2' |
O2' |
1.419 |
1.429 |
| C2' |
C3' |
1.508 |
1.547 |
| C2' |
H2' |
1.115 |
1.090 |
| O2' |
H1 |
0.950 |
0.966 |
| C3' |
O3' |
1.423 |
1.429 |
| C3' |
H3' |
1.115 |
1.090 |
| O3' |
H3 |
0.950 |
0.968 |
Bond Angles for RAB
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C5' |
O5' |
H5' |
110.0 |
106.9 |
| O5' |
C5' |
C4' |
110.0 |
109.5 |
| O5' |
C5' |
H5'1 |
112.0 |
109.5 |
| O5' |
C5' |
H5'2 |
112.0 |
109.5 |
| C4' |
C5' |
H5'1 |
112.0 |
109.5 |
| C4' |
C5' |
H5'2 |
112.0 |
109.4 |
| C5' |
C4' |
O4' |
116.1 |
110.4 |
| C5' |
C4' |
C3' |
114.9 |
110.5 |
| C5' |
C4' |
H4' |
98.8 |
110.3 |
| H5'1 |
C5' |
H5'2 |
98.4 |
109.4 |
| O4' |
C4' |
C3' |
103.0 |
104.8 |
| O4' |
C4' |
H4' |
111.6 |
110.4 |
| C4' |
O4' |
C1' |
111.5 |
105.3 |
| C3' |
C4' |
H4' |
112.9 |
110.4 |
| C4' |
C3' |
C2' |
108.7 |
104.1 |
| C4' |
C3' |
O3' |
106.4 |
110.5 |
| C4' |
C3' |
H3' |
110.7 |
110.5 |
| O4' |
C1' |
N9 |
122.4 |
110.4 |
| O4' |
C1' |
C2' |
102.6 |
104.9 |
| O4' |
C1' |
H1' |
105.5 |
110.4 |
| N9 |
C1' |
C2' |
109.1 |
110.3 |
| N9 |
C1' |
H1' |
98.6 |
110.3 |
| C1' |
N9 |
C4 |
137.2 |
126.3 |
| C1' |
N9 |
C8 |
116.4 |
126.3 |
| C2' |
C1' |
H1' |
119.8 |
110.4 |
| C1' |
C2' |
O2' |
115.2 |
110.6 |
| C1' |
C2' |
C3' |
102.4 |
103.9 |
| C1' |
C2' |
H2' |
111.0 |
110.7 |
| C4 |
N9 |
C8 |
106.3 |
107.4 |
| N9 |
C4 |
N3 |
129.0 |
134.9 |
| N9 |
C4 |
C5 |
104.4 |
106.0 |
| N9 |
C8 |
N7 |
115.1 |
110.0 |
| N9 |
C8 |
H8 |
124.2 |
125.0 |
| N3 |
C4 |
C5 |
126.6 |
119.1 |
| C4 |
N3 |
C2 |
112.7 |
120.6 |
| C4 |
C5 |
C6 |
116.0 |
118.2 |
| C4 |
C5 |
N7 |
111.1 |
107.1 |
| N3 |
C2 |
N1 |
126.9 |
122.5 |
| N3 |
C2 |
H2 |
116.0 |
118.8 |
| N1 |
C2 |
H2 |
117.0 |
118.7 |
| C2 |
N1 |
C6 |
119.6 |
121.2 |
| N1 |
C6 |
N6 |
119.8 |
120.8 |
| N1 |
C6 |
C5 |
118.2 |
118.5 |
| N6 |
C6 |
C5 |
122.0 |
120.8 |
| C6 |
N6 |
HN61 |
108.5 |
120.0 |
| C6 |
N6 |
HN62 |
119.8 |
120.0 |
| C6 |
C5 |
N7 |
132.9 |
134.7 |
| HN61 |
N6 |
HN62 |
108.5 |
120.0 |
| C5 |
N7 |
C8 |
103.1 |
109.4 |
| N7 |
C8 |
H8 |
120.7 |
125.0 |
| O2' |
C2' |
C3' |
110.9 |
110.5 |
| O2' |
C2' |
H2' |
102.5 |
110.4 |
| C2' |
O2' |
H1 |
115.2 |
106.8 |
| C3' |
C2' |
H2' |
115.3 |
110.6 |
| C2' |
C3' |
O3' |
105.3 |
110.5 |
| C2' |
C3' |
H3' |
111.7 |
110.6 |
| O3' |
C3' |
H3' |
113.8 |
110.5 |
| C3' |
O3' |
H3 |
106.4 |
106.7 |
Torsion Angles for RAB
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C4' |
C5' |
O5' |
H5'1 |
125.3 |
120.0 |
| C4' |
C5' |
O5' |
H5'2 |
234.7 |
240.0 |
| O5' |
C5' |
C4' |
O4' |
9.8 |
66.5 |
| O5' |
C5' |
C4' |
C3' |
130.1 |
181.9 |
| O5' |
C5' |
C4' |
H4' |
250.5 |
304.2 |
| H5'1 |
C5' |
O5' |
H5'2 |
109.5 |
119.9 |
| H5' |
O5' |
C5' |
C4' |
180.0 |
180.0 |
| H5' |
O5' |
C5' |
H5'1 |
54.7 |
59.9 |
| H5' |
O5' |
C5' |
H5'2 |
305.3 |
300.0 |
| C4' |
C5' |
O5' |
H5' |
180.0 |
180.0 |
| O5' |
C5' |
C4' |
H5'1 |
234.7 |
240.0 |
| O5' |
C5' |
C4' |
H5'2 |
125.3 |
120.1 |
| H5'1 |
C5' |
C4' |
H5'2 |
250.5 |
240.1 |
| O4' |
C4' |
C5' |
C3' |
239.7 |
244.6 |
| O4' |
C4' |
C5' |
H4' |
119.3 |
122.2 |
| C5' |
C4' |
O4' |
C1' |
105.1 |
159.5 |
| C3' |
C4' |
C5' |
H4' |
239.6 |
237.7 |
| C5' |
C4' |
C3' |
C2' |
232.0 |
217.0 |
| C5' |
C4' |
C3' |
O3' |
119.0 |
98.4 |
| C5' |
C4' |
C3' |
H3' |
355.0 |
335.8 |
| H5'1 |
C5' |
O5' |
H5' |
54.7 |
59.9 |
| O5' |
C5' |
H5'1 |
C4' |
124.2 |
120.1 |
| O5' |
C5' |
H5'1 |
H5'2 |
242.1 |
240.0 |
| C4' |
C5' |
H5'1 |
H5'2 |
117.9 |
119.9 |
| H5'1 |
C5' |
C4' |
O4' |
135.1 |
186.5 |
| H5'1 |
C5' |
C4' |
C3' |
255.4 |
301.9 |
| H5'1 |
C5' |
C4' |
H4' |
15.7 |
64.3 |
| H5'2 |
C5' |
O5' |
H5' |
305.3 |
300.0 |
| O5' |
C5' |
H5'2 |
C4' |
235.8 |
239.9 |
| O5' |
C5' |
H5'2 |
H5'1 |
117.9 |
120.0 |
| C4' |
C5' |
H5'2 |
H5'1 |
242.1 |
240.0 |
| H5'2 |
C5' |
C4' |
O4' |
244.5 |
306.4 |
| H5'2 |
C5' |
C4' |
C3' |
4.8 |
61.8 |
| H5'2 |
C5' |
C4' |
H4' |
125.2 |
184.2 |
| O4' |
C4' |
C5' |
H5'1 |
135.1 |
186.5 |
| O4' |
C4' |
C5' |
H5'2 |
244.5 |
306.4 |
| C5' |
C4' |
O4' |
C3' |
126.5 |
119.0 |
| C5' |
C4' |
O4' |
H4' |
247.9 |
237.8 |
| C3' |
C4' |
O4' |
H4' |
121.4 |
118.8 |
| O4' |
C4' |
C3' |
C2' |
359.3 |
335.9 |
| O4' |
C4' |
C3' |
O3' |
246.3 |
217.3 |
| O4' |
C4' |
C3' |
H3' |
122.3 |
94.7 |
| C4' |
O4' |
C1' |
N9 |
271.7 |
200.7 |
| C4' |
O4' |
C1' |
C2' |
34.5 |
319.5 |
| C4' |
O4' |
C1' |
H1' |
160.7 |
78.4 |
| C3' |
C4' |
C5' |
H5'1 |
255.4 |
301.9 |
| C3' |
C4' |
C5' |
H5'2 |
4.8 |
61.8 |
| C5' |
C4' |
C3' |
O4' |
232.7 |
241.1 |
| C5' |
C4' |
C3' |
H4' |
112.2 |
122.3 |
| O4' |
C4' |
C3' |
H4' |
239.5 |
241.2 |
| C3' |
C4' |
O4' |
C1' |
338.6 |
40.5 |
| C1' |
C2' |
C3' |
C4' |
20.3 |
0.1 |
| O2' |
C2' |
C3' |
C4' |
143.7 |
118.8 |
| C4' |
C3' |
C2' |
H2' |
259.6 |
241.4 |
| C2' |
C3' |
C4' |
O3' |
113.0 |
118.6 |
| C2' |
C3' |
C4' |
H3' |
237.1 |
241.3 |
| O3' |
C3' |
C4' |
H3' |
124.1 |
122.6 |
| C4' |
C3' |
O3' |
H3 |
180.0 |
298.5 |
| H4' |
C4' |
C5' |
H5'1 |
15.7 |
64.3 |
| H4' |
C4' |
C5' |
H5'2 |
125.2 |
184.2 |
| C5' |
C4' |
H4' |
O4' |
122.7 |
122.2 |
| C5' |
C4' |
H4' |
C3' |
238.2 |
237.6 |
| O4' |
C4' |
H4' |
C3' |
115.5 |
115.4 |
| H4' |
C4' |
O4' |
C1' |
217.2 |
281.7 |
| H4' |
C4' |
C3' |
C2' |
119.8 |
94.7 |
| H4' |
C4' |
C3' |
O3' |
6.8 |
336.1 |
| H4' |
C4' |
C3' |
H3' |
242.7 |
213.5 |
| C1' |
O4' |
C4' |
C3' |
338.6 |
40.5 |
| C1' |
O4' |
C4' |
H4' |
217.2 |
281.7 |
| N9 |
C1' |
O4' |
C2' |
237.3 |
241.1 |
| N9 |
C1' |
O4' |
H1' |
111.1 |
122.2 |
| O4' |
C1' |
N9 |
C4 |
80.0 |
202.0 |
| O4' |
C1' |
N9 |
C8 |
262.7 |
22.0 |
| C2' |
C1' |
O4' |
H1' |
233.8 |
241.1 |
| O4' |
C1' |
C2' |
O2' |
207.7 |
265.3 |
| O4' |
C1' |
C2' |
C3' |
328.2 |
23.9 |
| O4' |
C1' |
C2' |
H2' |
91.8 |
142.6 |
| O4' |
C1' |
N9 |
C2' |
119.6 |
115.5 |
| O4' |
C1' |
N9 |
H1' |
245.4 |
237.7 |
| C2' |
C1' |
N9 |
H1' |
125.7 |
122.2 |
| N9 |
C1' |
C2' |
O2' |
339.0 |
24.1 |
| N9 |
C1' |
C2' |
C3' |
99.5 |
142.7 |
| N9 |
C1' |
C2' |
H2' |
223.0 |
261.4 |
| C4 |
N9 |
C1' |
C8 |
177.3 |
180.0 |
| C1' |
N9 |
C4 |
N3 |
2.8 |
0.0 |
| C1' |
N9 |
C4 |
C5 |
182.8 |
180.2 |
| C1' |
N9 |
C8 |
N7 |
177.8 |
180.1 |
| C1' |
N9 |
C8 |
H8 |
357.8 |
0.0 |
| C4' |
C3' |
C2' |
C1' |
20.3 |
0.1 |
| O4' |
C1' |
C2' |
N9 |
228.8 |
241.1 |
| O4' |
C1' |
C2' |
H1' |
116.4 |
119.0 |
| N9 |
C1' |
C2' |
H1' |
247.7 |
237.8 |
| C2' |
C1' |
N9 |
C4 |
320.3 |
86.5 |
| C2' |
C1' |
N9 |
C8 |
143.0 |
266.5 |
| O2' |
C2' |
C1' |
C3' |
239.5 |
241.4 |
| O2' |
C2' |
C1' |
H2' |
115.9 |
122.7 |
| C1' |
C2' |
O2' |
H1 |
180.0 |
176.0 |
| C3' |
C2' |
C1' |
H2' |
236.4 |
241.3 |
| C1' |
C2' |
C3' |
O3' |
134.0 |
118.8 |
| C1' |
C2' |
C3' |
H3' |
257.9 |
241.4 |
| O4' |
C1' |
H1' |
N9 |
127.2 |
122.3 |
| O4' |
C1' |
H1' |
C2' |
245.1 |
244.5 |
| N9 |
C1' |
H1' |
C2' |
117.9 |
122.2 |
| H1' |
C1' |
N9 |
C4 |
194.6 |
324.3 |
| H1' |
C1' |
N9 |
C8 |
17.3 |
144.3 |
| H1' |
C1' |
C2' |
O2' |
91.3 |
146.3 |
| H1' |
C1' |
C2' |
C3' |
211.8 |
264.9 |
| H1' |
C1' |
C2' |
H2' |
335.4 |
23.6 |
| C4 |
N9 |
C1' |
C2' |
320.3 |
86.5 |
| C4 |
N9 |
C1' |
H1' |
194.6 |
324.3 |
| C1' |
N9 |
C4 |
C8 |
182.6 |
180.0 |
| C4 |
N9 |
C8 |
N7 |
359.7 |
0.0 |
| C4 |
N9 |
C8 |
H8 |
179.7 |
180.0 |
| N3 |
C4 |
N9 |
C5 |
179.9 |
179.8 |
| N9 |
C4 |
N3 |
C2 |
180.1 |
180.0 |
| N9 |
C4 |
C5 |
C6 |
179.8 |
180.3 |
| N9 |
C4 |
C5 |
N7 |
359.8 |
359.6 |
| C8 |
N9 |
C1' |
C2' |
143.0 |
266.5 |
| C8 |
N9 |
C1' |
H1' |
17.3 |
144.3 |
| C1' |
N9 |
C8 |
C4 |
178.1 |
180.0 |
| C8 |
N9 |
C4 |
N3 |
180.2 |
180.0 |
| C8 |
N9 |
C4 |
C5 |
0.3 |
0.2 |
| C5 |
N7 |
C8 |
N9 |
0.2 |
359.7 |
| N7 |
C8 |
N9 |
H8 |
180.0 |
180.0 |
| N3 |
C4 |
N9 |
C8 |
180.2 |
180.0 |
| N9 |
C4 |
N3 |
C5 |
180.1 |
180.2 |
| N3 |
C4 |
C5 |
C6 |
359.8 |
0.5 |
| N3 |
C4 |
C5 |
N7 |
179.8 |
179.8 |
| C4 |
N3 |
C2 |
N1 |
0.0 |
359.9 |
| C4 |
N3 |
C2 |
H2 |
180.0 |
179.9 |
| C5 |
C4 |
N9 |
C8 |
0.3 |
0.2 |
| N9 |
C4 |
C5 |
N3 |
179.9 |
179.9 |
| C5 |
C4 |
N3 |
C2 |
0.1 |
359.8 |
| N1 |
C6 |
C5 |
C4 |
0.2 |
359.5 |
| N6 |
C6 |
C5 |
C4 |
180.2 |
179.8 |
| C6 |
C5 |
C4 |
N7 |
180.0 |
180.7 |
| C4 |
C5 |
N7 |
C8 |
0.0 |
0.4 |
| C2 |
N3 |
C4 |
C5 |
0.1 |
359.8 |
| N1 |
C2 |
N3 |
H2 |
180.0 |
180.0 |
| N3 |
C2 |
N1 |
C6 |
360.0 |
0.0 |
| N3 |
C2 |
N1 |
H2 |
180.0 |
180.0 |
| C2 |
N1 |
C6 |
N6 |
179.9 |
180.0 |
| C2 |
N1 |
C6 |
C5 |
359.9 |
0.2 |
| N3 |
C2 |
H2 |
N1 |
180.0 |
180.0 |
| H2 |
C2 |
N1 |
C6 |
180.0 |
180.1 |
| C4 |
C5 |
C6 |
N1 |
0.2 |
359.5 |
| C6 |
N1 |
C2 |
H2 |
180.0 |
180.1 |
| N6 |
C6 |
N1 |
C5 |
180.0 |
179.8 |
| N1 |
C6 |
N6 |
HN61 |
54.8 |
360.0 |
| N1 |
C6 |
N6 |
HN62 |
180.0 |
179.7 |
| N1 |
C6 |
C5 |
N7 |
180.1 |
180.5 |
| C4 |
C5 |
C6 |
N6 |
180.2 |
179.8 |
| N1 |
C6 |
N6 |
C5 |
180.0 |
180.2 |
| N6 |
C6 |
C5 |
N7 |
0.2 |
0.7 |
| HN61 |
N6 |
C6 |
HN62 |
234.8 |
180.3 |
| C4 |
C5 |
C6 |
N7 |
180.0 |
179.0 |
| N1 |
C6 |
C5 |
N6 |
180.0 |
179.8 |
| C5 |
C6 |
N6 |
HN61 |
234.7 |
179.8 |
| C5 |
C6 |
N6 |
HN62 |
359.9 |
359.5 |
| C6 |
C5 |
N7 |
C8 |
180.1 |
179.5 |
| HN61 |
N6 |
C6 |
C5 |
234.7 |
179.8 |
| C6 |
N6 |
HN61 |
HN62 |
131.6 |
179.7 |
| HN62 |
N6 |
C6 |
C5 |
359.9 |
359.5 |
| C6 |
N6 |
HN62 |
HN61 |
234.8 |
180.3 |
| N9 |
C8 |
N7 |
C5 |
0.2 |
359.7 |
| C4 |
C5 |
N7 |
C6 |
180.0 |
180.9 |
| C5 |
N7 |
C8 |
H8 |
180.2 |
179.7 |
| N9 |
C8 |
N7 |
H8 |
180.0 |
180.0 |
| N9 |
C8 |
H8 |
N7 |
180.0 |
180.0 |
| C4' |
C3' |
C2' |
O2' |
143.7 |
118.8 |
| O2' |
C2' |
C1' |
H1' |
91.3 |
146.3 |
| C1' |
C2' |
O2' |
C3' |
115.8 |
114.5 |
| C1' |
C2' |
O2' |
H2' |
239.3 |
237.2 |
| C3' |
C2' |
O2' |
H2' |
123.6 |
122.7 |
| O2' |
C2' |
C3' |
O3' |
257.4 |
237.4 |
| O2' |
C2' |
C3' |
H3' |
21.4 |
0.1 |
| C2' |
C3' |
C4' |
H4' |
119.8 |
94.7 |
| C4' |
C3' |
C2' |
O3' |
246.3 |
241.3 |
| C4' |
C3' |
C2' |
H3' |
122.3 |
118.7 |
| C3' |
C2' |
C1' |
H1' |
211.8 |
264.9 |
| C1' |
C2' |
C3' |
O2' |
236.5 |
241.4 |
| C1' |
C2' |
C3' |
H2' |
120.6 |
118.8 |
| O2' |
C2' |
C3' |
H2' |
244.1 |
237.4 |
| C3' |
C2' |
O2' |
H1 |
64.2 |
61.5 |
| O3' |
C3' |
C2' |
H3' |
236.0 |
237.4 |
| C2' |
C3' |
O3' |
H3 |
64.7 |
183.8 |
| H2' |
C2' |
C1' |
H1' |
335.4 |
23.6 |
| C1' |
C2' |
H2' |
O2' |
123.5 |
122.8 |
| C1' |
C2' |
H2' |
C3' |
244.1 |
245.4 |
| O2' |
C2' |
H2' |
C3' |
120.6 |
122.6 |
| H2' |
C2' |
O2' |
H1 |
300.6 |
298.8 |
| H2' |
C2' |
C3' |
O3' |
13.3 |
0.0 |
| H2' |
C2' |
C3' |
H3' |
137.3 |
122.6 |
| H1 |
O2' |
C2' |
C3' |
64.2 |
61.5 |
| H1 |
O2' |
C2' |
H2' |
300.6 |
298.8 |
| O3' |
C3' |
C4' |
H4' |
6.8 |
336.1 |
| C4' |
C3' |
O3' |
C2' |
115.3 |
114.7 |
| C4' |
C3' |
O3' |
H3' |
237.9 |
237.4 |
| O3' |
C3' |
C2' |
H2' |
13.3 |
0.0 |
| C2' |
C3' |
O3' |
H3' |
122.6 |
122.7 |
| H3' |
C3' |
C4' |
H4' |
242.7 |
213.5 |
| C4' |
C3' |
H3' |
C2' |
238.8 |
245.3 |
| C4' |
C3' |
H3' |
O3' |
119.7 |
122.6 |
| H3' |
C3' |
C2' |
H2' |
137.3 |
122.6 |
| C2' |
C3' |
H3' |
O3' |
240.9 |
237.4 |
| H3' |
C3' |
O3' |
H3 |
302.1 |
61.1 |
| H3 |
O3' |
C3' |
H3' |
302.1 |
61.1 |