Atom Nomenclature for R8G

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for R8G

Atom Name (V3) Atom Name (V2)
CAA CAA
CAB CAB
CAC CAC
CAD CAD
OAE OAE
OAF OAF
OAG OAG
OAH OAH
CAI CAI
CAJ CAJ
CAK CAK
CAL CAL
CAM CAM
CAN CAN
CAO CAO
CAP CAP
CAQ CAQ
CAR CAR
CAS CAS
CAT CAT
CAU CAU
CAV CAV
CAW CAW
CAX CAX
CAY CAY
CAZ CAZ
CBA CBA
CBB CBB
CBC CBC
CBD CBD
CBE CBE
CBF CBF
CBG CBG
CBH CBH
CBI CBI
CBJ CBJ
CBK CBK
CBL CBL
NBM NBM
NBN NBN
CBO CBO
CBP CBP
CBQ CBQ
CBR CBR
CBS CBS
CBT CBT
CBU CBU
CBV CBV
CBW CBW
CBX CBX
CBY CBY
CBZ CBZ
NCA NCA
NCB NCB
NCC NCC
NCD NCD
NCE NCE
NCF NCF
NCG NCG
NCH NCH
NCI NCI
NCJ NCJ
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23
H24 H24
H25 H25
H26 H26
H27 H27
H28 H28
H29 H29
H30 H30
H31 H31
H32 H32
H33 H33
H34 H34
H35 H35
H36 H36
H37 H37
H38 H38
H39 H39
H40 H40
H41 H41
H42 H42
H43 H43
H44 H44
H45 H45
H46 H46
H47 H47
H48 H48
H49 H49
H50 H50
H51 H51
H52 H52
H53 H53
H54 H54
H55 H55
H56 H56
H57 H57
H58 H58
H59 H59
H60 H60
H61 H61
H62 H62
H63 H63
H64 H64
H65 H65
H66 H66
H67 H67
H68 H68
H69 H69
H70 H70
H71 H71
H72 H72