PDB Chemical Component R8E
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for R8E
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
CL29 |
C13 |
1.778 |
1.736 |
C13 |
C8 |
1.310 |
1.389 |
C13 |
C12 |
1.357 |
1.383 |
C8 |
O7 |
1.349 |
1.359 |
C8 |
C9 |
1.390 |
1.387 |
O7 |
C4 |
1.409 |
1.359 |
C4 |
C3 |
1.413 |
1.384 |
C4 |
C5 |
1.411 |
1.389 |
C3 |
C2 |
1.394 |
1.395 |
C2 |
C26 |
1.285 |
1.432 |
C2 |
C1 |
1.424 |
1.396 |
C26 |
N27 |
1.105 |
1.136 |
C5 |
C6 |
1.425 |
1.384 |
C6 |
CL28 |
1.785 |
1.735 |
C6 |
C1 |
1.395 |
1.382 |
C12 |
C11 |
1.364 |
1.382 |
C11 |
C10 |
1.332 |
1.388 |
C10 |
C9 |
1.344 |
1.386 |
C10 |
O14 |
1.359 |
1.359 |
O14 |
C15 |
1.393 |
1.430 |
C15 |
C16 |
1.497 |
1.507 |
C16 |
N20 |
1.342 |
1.302 |
C16 |
C17 |
1.526 |
1.458 |
N20 |
N19 |
1.409 |
1.398 |
N19 |
C18 |
1.304 |
1.368 |
C18 |
N24 |
1.330 |
1.329 |
C18 |
C17 |
1.376 |
1.409 |
N24 |
C23 |
1.353 |
1.321 |
C23 |
N25 |
1.480 |
1.389 |
C23 |
C22 |
1.387 |
1.396 |
C22 |
C21 |
1.411 |
1.367 |
C21 |
C17 |
1.411 |
1.402 |
C3 |
H3 |
1.080 |
1.080 |
C5 |
H5 |
1.080 |
1.081 |
C1 |
H1 |
1.080 |
1.079 |
C12 |
H12 |
1.079 |
1.080 |
C11 |
H11 |
1.080 |
1.080 |
C9 |
H9 |
1.080 |
1.080 |
C15 |
H15 |
1.100 |
1.090 |
C15 |
H15A |
1.100 |
1.090 |
N19 |
HN19 |
1.000 |
0.970 |
N25 |
HN25 |
0.999 |
0.970 |
N25 |
HN2A |
1.001 |
0.970 |
C22 |
H22 |
1.080 |
1.080 |
C21 |
H21 |
1.080 |
1.080 |
Bond Angles for R8E
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
CL29 |
C13 |
C8 |
112.3 |
120.0 |
CL29 |
C13 |
C12 |
124.1 |
120.0 |
C8 |
C13 |
C12 |
123.5 |
120.1 |
C13 |
C8 |
O7 |
111.7 |
120.1 |
C13 |
C8 |
C9 |
122.2 |
119.9 |
C13 |
C12 |
C11 |
113.3 |
120.1 |
C13 |
C12 |
H12 |
123.4 |
120.0 |
O7 |
C8 |
C9 |
126.1 |
120.0 |
C8 |
O7 |
C4 |
118.5 |
118.0 |
C8 |
C9 |
C10 |
115.3 |
119.9 |
C8 |
C9 |
H9 |
122.4 |
120.1 |
O7 |
C4 |
C3 |
118.7 |
120.0 |
O7 |
C4 |
C5 |
121.1 |
120.0 |
C3 |
C4 |
C5 |
120.2 |
120.0 |
C4 |
C3 |
C2 |
121.4 |
119.9 |
C4 |
C3 |
H3 |
119.3 |
120.1 |
C4 |
C5 |
C6 |
117.1 |
120.2 |
C4 |
C5 |
H5 |
121.5 |
119.9 |
C3 |
C2 |
C26 |
121.5 |
120.1 |
C3 |
C2 |
C1 |
119.8 |
119.8 |
C2 |
C3 |
H3 |
119.3 |
120.1 |
C26 |
C2 |
C1 |
118.5 |
120.1 |
C2 |
C26 |
N27 |
179.9 |
180.0 |
C2 |
C1 |
C6 |
117.9 |
119.9 |
C2 |
C1 |
H1 |
121.1 |
120.1 |
C5 |
C6 |
CL28 |
123.0 |
119.9 |
C5 |
C6 |
C1 |
123.5 |
120.2 |
C6 |
C5 |
H5 |
121.4 |
119.9 |
CL28 |
C6 |
C1 |
113.5 |
119.9 |
C6 |
C1 |
H1 |
121.0 |
120.0 |
C12 |
C11 |
C10 |
124.7 |
120.1 |
C11 |
C12 |
H12 |
123.3 |
120.0 |
C12 |
C11 |
H11 |
117.7 |
119.9 |
C11 |
C10 |
C9 |
121.0 |
119.9 |
C11 |
C10 |
O14 |
119.8 |
120.0 |
C10 |
C11 |
H11 |
117.6 |
120.0 |
C9 |
C10 |
O14 |
119.2 |
120.0 |
C10 |
C9 |
H9 |
122.4 |
120.0 |
C10 |
O14 |
C15 |
125.9 |
117.0 |
O14 |
C15 |
C16 |
99.3 |
109.4 |
O14 |
C15 |
H15 |
113.0 |
109.5 |
O14 |
C15 |
H15A |
115.1 |
109.5 |
C15 |
C16 |
N20 |
124.4 |
126.2 |
C15 |
C16 |
C17 |
129.0 |
126.1 |
C16 |
C15 |
H15 |
113.1 |
109.5 |
C16 |
C15 |
H15A |
115.1 |
109.5 |
N20 |
C16 |
C17 |
106.6 |
107.7 |
C16 |
N20 |
N19 |
105.7 |
110.1 |
C16 |
C17 |
C18 |
105.6 |
106.4 |
C16 |
C17 |
C21 |
134.8 |
134.2 |
N20 |
N19 |
C18 |
114.4 |
109.2 |
N20 |
N19 |
HN19 |
122.8 |
125.4 |
N19 |
C18 |
N24 |
131.9 |
133.5 |
N19 |
C18 |
C17 |
107.6 |
106.6 |
C18 |
N19 |
HN19 |
122.8 |
125.4 |
N24 |
C18 |
C17 |
120.5 |
119.9 |
C18 |
N24 |
C23 |
121.8 |
121.4 |
C18 |
C17 |
C21 |
119.6 |
119.4 |
N24 |
C23 |
N25 |
116.3 |
119.3 |
N24 |
C23 |
C22 |
121.4 |
121.4 |
N25 |
C23 |
C22 |
122.4 |
119.3 |
C23 |
N25 |
HN25 |
109.5 |
120.0 |
C23 |
N25 |
HN2A |
109.5 |
120.0 |
C23 |
C22 |
C21 |
117.7 |
119.6 |
C23 |
C22 |
H22 |
121.2 |
120.2 |
C22 |
C21 |
C17 |
119.1 |
118.3 |
C21 |
C22 |
H22 |
121.2 |
120.2 |
C22 |
C21 |
H21 |
120.4 |
120.8 |
C17 |
C21 |
H21 |
120.5 |
120.8 |
H15 |
C15 |
H15A |
101.9 |
109.5 |
HN25 |
N25 |
HN2A |
109.4 |
120.0 |
Torsion Angles for R8E
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C8 |
C13 |
CL29 |
C12 |
181.5 |
180.2 |
CL29 |
C13 |
C8 |
O7 |
1.7 |
0.1 |
CL29 |
C13 |
C8 |
C9 |
180.0 |
180.0 |
CL29 |
C13 |
C12 |
C11 |
182.0 |
180.0 |
CL29 |
C13 |
C12 |
H12 |
2.0 |
359.9 |
CL29 |
C13 |
C8 |
C12 |
178.5 |
179.8 |
C8 |
C13 |
C12 |
C11 |
0.3 |
359.8 |
C8 |
C13 |
C12 |
H12 |
180.3 |
179.7 |
O7 |
C8 |
C13 |
C9 |
181.8 |
180.1 |
C13 |
C8 |
O7 |
C4 |
139.6 |
180.6 |
C13 |
C8 |
C9 |
C10 |
357.2 |
360.0 |
C13 |
C8 |
C9 |
H9 |
177.2 |
180.0 |
CL29 |
C13 |
C12 |
C8 |
181.7 |
180.2 |
C12 |
C13 |
C8 |
O7 |
183.3 |
180.3 |
C12 |
C13 |
C8 |
C9 |
1.5 |
0.2 |
C13 |
C12 |
C11 |
C10 |
359.3 |
0.0 |
C11 |
C12 |
C13 |
H12 |
180.0 |
180.1 |
C13 |
C12 |
C11 |
H11 |
179.3 |
179.9 |
O7 |
C8 |
C13 |
C12 |
183.3 |
180.3 |
C13 |
C8 |
O7 |
C9 |
178.1 |
179.9 |
O7 |
C8 |
C9 |
C10 |
175.1 |
179.9 |
O7 |
C8 |
C9 |
H9 |
355.1 |
359.9 |
C8 |
O7 |
C4 |
C3 |
119.6 |
90.1 |
C8 |
O7 |
C4 |
C5 |
301.6 |
269.7 |
C9 |
C8 |
C13 |
C12 |
1.5 |
0.2 |
C13 |
C8 |
C9 |
O7 |
182.1 |
180.1 |
C9 |
C8 |
O7 |
C4 |
321.5 |
0.6 |
C11 |
C10 |
C9 |
C8 |
2.4 |
359.8 |
C8 |
C9 |
C10 |
O14 |
183.1 |
180.0 |
C10 |
C9 |
C8 |
H9 |
180.0 |
180.0 |
C4 |
O7 |
C8 |
C9 |
321.5 |
0.6 |
C3 |
C4 |
O7 |
C5 |
178.0 |
180.4 |
O7 |
C4 |
C3 |
C2 |
180.4 |
180.0 |
O7 |
C4 |
C3 |
H3 |
0.4 |
359.9 |
O7 |
C4 |
C5 |
C6 |
180.0 |
180.0 |
O7 |
C4 |
C5 |
H5 |
0.0 |
0.1 |
O7 |
C4 |
C3 |
C5 |
182.0 |
179.6 |
C3 |
C4 |
C5 |
C6 |
2.1 |
359.7 |
C3 |
C4 |
C5 |
H5 |
182.1 |
179.7 |
C4 |
C3 |
C2 |
C26 |
183.5 |
180.0 |
C4 |
C3 |
C2 |
C1 |
359.8 |
360.0 |
C2 |
C3 |
C4 |
H3 |
180.0 |
180.1 |
O7 |
C4 |
C5 |
C3 |
177.9 |
180.4 |
C5 |
C4 |
C3 |
C2 |
358.4 |
0.3 |
C5 |
C4 |
C3 |
H3 |
178.4 |
180.2 |
C4 |
C5 |
C6 |
CL28 |
179.1 |
180.0 |
C4 |
C5 |
C6 |
C1 |
359.2 |
0.0 |
C6 |
C5 |
C4 |
H5 |
180.0 |
180.0 |
C2 |
C3 |
C4 |
C5 |
358.4 |
0.3 |
C4 |
C3 |
C2 |
H3 |
180.0 |
179.9 |
C26 |
C2 |
C3 |
C1 |
183.7 |
180.0 |
C3 |
C2 |
C26 |
N27 |
115.9 |
292.2 |
C3 |
C2 |
C1 |
C6 |
1.5 |
359.7 |
C3 |
C2 |
C1 |
H1 |
181.5 |
180.0 |
C3 |
C2 |
C26 |
C1 |
176.4 |
180.0 |
C26 |
C2 |
C3 |
H3 |
3.4 |
0.1 |
C26 |
C2 |
C1 |
C6 |
177.9 |
179.7 |
C26 |
C2 |
C1 |
H1 |
357.9 |
0.0 |
C3 |
C2 |
C1 |
C26 |
183.6 |
180.0 |
C1 |
C2 |
C3 |
H3 |
179.8 |
180.1 |
C1 |
C2 |
C26 |
N27 |
299.5 |
112.2 |
C5 |
C6 |
C1 |
C2 |
359.1 |
0.3 |
CL28 |
C6 |
C1 |
C2 |
179.1 |
180.3 |
C6 |
C1 |
C2 |
H1 |
180.0 |
179.7 |
N27 |
C26 |
C2 |
C1 |
299.5 |
112.2 |
C4 |
C5 |
C6 |
H5 |
180.0 |
180.0 |
C2 |
C1 |
C6 |
C5 |
359.1 |
0.3 |
CL28 |
C6 |
C5 |
C1 |
179.9 |
180.0 |
C5 |
C6 |
C1 |
H1 |
179.0 |
180.0 |
C2 |
C1 |
C6 |
CL28 |
179.1 |
180.3 |
C5 |
C6 |
CL28 |
C1 |
180.1 |
180.0 |
CL28 |
C6 |
C5 |
H5 |
359.1 |
0.0 |
CL28 |
C6 |
C1 |
H1 |
359.1 |
359.9 |
C2 |
C1 |
C6 |
H1 |
180.0 |
180.3 |
C5 |
C6 |
C1 |
CL28 |
179.9 |
180.0 |
C1 |
C6 |
C5 |
H5 |
179.2 |
180.0 |
C13 |
C12 |
C11 |
H12 |
180.0 |
179.9 |
C12 |
C11 |
C10 |
C9 |
359.2 |
0.2 |
C12 |
C11 |
C10 |
O14 |
178.5 |
180.0 |
C10 |
C11 |
C12 |
H11 |
180.0 |
180.1 |
C8 |
C9 |
C10 |
C11 |
2.4 |
359.8 |
C10 |
C11 |
C12 |
H12 |
179.3 |
180.1 |
C12 |
C11 |
C10 |
H11 |
180.0 |
179.9 |
C9 |
C10 |
C11 |
O14 |
180.7 |
180.2 |
C11 |
C10 |
C9 |
H9 |
182.4 |
179.8 |
C11 |
C10 |
O14 |
C15 |
33.0 |
360.0 |
C8 |
C9 |
C10 |
H9 |
180.0 |
180.0 |
C11 |
C10 |
C9 |
O14 |
179.3 |
179.8 |
C9 |
C10 |
C11 |
H11 |
179.3 |
180.3 |
C9 |
C10 |
O14 |
C15 |
212.3 |
179.8 |
C11 |
C10 |
O14 |
C9 |
180.7 |
180.2 |
O14 |
C10 |
C11 |
H11 |
358.6 |
0.1 |
O14 |
C10 |
C9 |
H9 |
3.1 |
360.0 |
C10 |
O14 |
C15 |
C16 |
67.9 |
180.0 |
C10 |
O14 |
C15 |
H15 |
187.9 |
300.0 |
C10 |
O14 |
C15 |
H15A |
304.4 |
60.0 |
O14 |
C15 |
C16 |
N20 |
228.1 |
90.0 |
O14 |
C15 |
C16 |
C17 |
47.6 |
269.6 |
C16 |
C15 |
O14 |
H15 |
240.0 |
240.0 |
C16 |
C15 |
O14 |
H15A |
123.5 |
120.0 |
H15 |
C15 |
O14 |
H15A |
243.5 |
240.0 |
O14 |
C15 |
C16 |
H15 |
120.0 |
120.0 |
O14 |
C15 |
C16 |
H15A |
236.5 |
240.0 |
N20 |
C16 |
C15 |
C17 |
180.5 |
180.4 |
C15 |
C16 |
N20 |
N19 |
178.9 |
179.9 |
C15 |
C16 |
C17 |
C18 |
180.8 |
179.9 |
C15 |
C16 |
C17 |
C21 |
0.7 |
0.7 |
H15 |
C15 |
C16 |
H15A |
116.5 |
120.0 |
C15 |
C16 |
N20 |
C17 |
179.6 |
179.7 |
N20 |
C16 |
C15 |
H15 |
108.1 |
330.1 |
N20 |
C16 |
C15 |
H15A |
351.6 |
210.0 |
N20 |
C16 |
C17 |
C18 |
0.3 |
359.6 |
N20 |
C16 |
C17 |
C21 |
180.3 |
180.4 |
C16 |
N20 |
N19 |
C18 |
0.9 |
360.0 |
C16 |
N20 |
N19 |
HN19 |
180.9 |
180.0 |
C15 |
C16 |
C17 |
N20 |
180.4 |
180.3 |
C17 |
C16 |
C15 |
H15 |
287.6 |
149.7 |
C17 |
C16 |
C15 |
H15A |
171.1 |
29.6 |
C17 |
C16 |
N20 |
N19 |
359.3 |
0.2 |
N19 |
C18 |
C17 |
C16 |
0.2 |
0.4 |
N24 |
C18 |
C17 |
C16 |
180.3 |
180.2 |
C18 |
C17 |
C16 |
C21 |
180.1 |
179.2 |
C22 |
C21 |
C17 |
C16 |
179.3 |
179.6 |
C16 |
C17 |
C21 |
H21 |
359.3 |
359.4 |
N19 |
N20 |
C16 |
C17 |
359.3 |
0.2 |
N20 |
N19 |
C18 |
N24 |
179.2 |
180.0 |
N20 |
N19 |
C18 |
C17 |
359.3 |
359.8 |
C18 |
N19 |
N20 |
HN19 |
180.0 |
180.0 |
C16 |
C17 |
C18 |
N19 |
0.2 |
0.4 |
N20 |
N19 |
C18 |
HN19 |
180.0 |
180.0 |
N24 |
C18 |
N19 |
C17 |
179.9 |
180.2 |
N19 |
C18 |
N24 |
C23 |
180.1 |
180.0 |
N19 |
C18 |
C17 |
C21 |
180.3 |
179.7 |
C16 |
C17 |
C18 |
N24 |
180.3 |
180.2 |
N19 |
C18 |
N24 |
C17 |
180.1 |
179.7 |
N24 |
C18 |
N19 |
HN19 |
359.2 |
0.0 |
N24 |
C18 |
C17 |
C21 |
0.3 |
359.5 |
C18 |
N24 |
C23 |
N25 |
181.1 |
180.1 |
C18 |
N24 |
C23 |
C22 |
0.1 |
360.0 |
C16 |
C17 |
C18 |
C21 |
180.0 |
180.7 |
N19 |
C18 |
C17 |
N24 |
179.9 |
180.2 |
C17 |
C18 |
N19 |
HN19 |
179.3 |
179.8 |
C17 |
C18 |
N24 |
C23 |
360.0 |
0.3 |
C22 |
C21 |
C17 |
C18 |
359.3 |
0.5 |
C18 |
C17 |
C21 |
H21 |
179.3 |
180.3 |
C23 |
N24 |
C18 |
C17 |
360.0 |
0.3 |
N25 |
C23 |
N24 |
C22 |
181.0 |
180.1 |
N24 |
C23 |
N25 |
HN25 |
347.5 |
359.9 |
N24 |
C23 |
N25 |
HN2A |
107.4 |
180.0 |
N24 |
C23 |
C22 |
C21 |
359.5 |
360.0 |
N24 |
C23 |
C22 |
H22 |
179.5 |
180.0 |
N24 |
C23 |
N25 |
C22 |
179.0 |
179.9 |
N25 |
C23 |
C22 |
C21 |
178.4 |
179.9 |
N25 |
C23 |
C22 |
H22 |
358.4 |
360.0 |
HN25 |
N25 |
C23 |
HN2A |
240.0 |
179.9 |
N24 |
C23 |
C22 |
N25 |
181.0 |
180.1 |
C22 |
C23 |
N25 |
HN25 |
168.4 |
180.0 |
C22 |
C23 |
N25 |
HN2A |
288.4 |
0.1 |
C23 |
C22 |
C21 |
C17 |
0.8 |
359.8 |
C21 |
C22 |
C23 |
H22 |
180.0 |
180.0 |
C23 |
C22 |
C21 |
H21 |
180.8 |
179.9 |
C16 |
C17 |
C21 |
C22 |
179.3 |
179.6 |
C18 |
C17 |
C21 |
C22 |
359.3 |
0.5 |
C23 |
C22 |
C21 |
H22 |
180.0 |
180.0 |
C17 |
C21 |
C22 |
H21 |
180.0 |
179.8 |
C16 |
C17 |
C21 |
C18 |
180.1 |
179.1 |
C17 |
C21 |
C22 |
H22 |
180.8 |
179.7 |
C22 |
C21 |
C17 |
H21 |
180.0 |
180.2 |
H3 |
C3 |
C4 |
C5 |
178.4 |
180.2 |
C4 |
C3 |
H3 |
C2 |
180.0 |
180.1 |
H3 |
C3 |
C2 |
C26 |
3.4 |
0.1 |
H3 |
C3 |
C2 |
C1 |
179.8 |
180.1 |
C4 |
C5 |
H5 |
C6 |
180.0 |
180.0 |
H5 |
C5 |
C6 |
CL28 |
359.1 |
0.0 |
H5 |
C5 |
C6 |
C1 |
179.2 |
180.0 |
C2 |
C1 |
H1 |
C6 |
180.0 |
179.7 |
C13 |
C12 |
H12 |
C11 |
180.0 |
180.1 |
H12 |
C12 |
C11 |
C10 |
179.3 |
180.1 |
H12 |
C12 |
C11 |
H11 |
359.3 |
0.0 |
C12 |
C11 |
H11 |
C10 |
180.0 |
180.1 |
H11 |
C11 |
C12 |
H12 |
359.3 |
0.0 |
H11 |
C11 |
C10 |
C9 |
179.3 |
180.3 |
H11 |
C11 |
C10 |
O14 |
358.6 |
0.1 |
C8 |
C9 |
H9 |
C10 |
180.0 |
180.0 |
H9 |
C9 |
C10 |
O14 |
3.1 |
360.0 |
O14 |
C15 |
H15 |
C16 |
248.2 |
240.0 |
O14 |
C15 |
H15 |
H15A |
124.1 |
120.0 |
H15 |
C15 |
C16 |
N20 |
108.1 |
330.1 |
H15 |
C15 |
C16 |
C17 |
287.6 |
149.7 |
C16 |
C15 |
H15 |
H15A |
235.9 |
240.0 |
O14 |
C15 |
H15A |
C16 |
114.6 |
120.0 |
O14 |
C15 |
H15A |
H15 |
237.3 |
240.0 |
H15A |
C15 |
C16 |
N20 |
351.6 |
210.0 |
H15A |
C15 |
C16 |
C17 |
171.1 |
29.6 |
C16 |
C15 |
H15A |
H15 |
122.7 |
120.0 |
N20 |
N19 |
HN19 |
C18 |
180.0 |
180.0 |
HN19 |
N19 |
C18 |
N24 |
359.2 |
0.0 |
HN19 |
N19 |
C18 |
C17 |
179.3 |
179.8 |
HN25 |
N25 |
C23 |
C22 |
168.4 |
180.0 |
C23 |
N25 |
HN25 |
HN2A |
120.0 |
180.1 |
HN2A |
N25 |
C23 |
C22 |
288.4 |
0.1 |
C23 |
N25 |
HN2A |
HN25 |
240.0 |
179.9 |
C23 |
C22 |
H22 |
C21 |
180.0 |
180.0 |
H22 |
C22 |
C21 |
C17 |
180.8 |
179.7 |
H22 |
C22 |
C21 |
H21 |
0.8 |
359.9 |
C22 |
C21 |
H21 |
C17 |
180.0 |
179.8 |
H21 |
C21 |
C22 |
H22 |
0.8 |
359.9 |