Atom Nomenclature for R82

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for R82

Atom Name (V3) Atom Name (V2)
C1 C1
O2 O2
C3 C3
C4 C4
C5 C5
O6 O6
C7 C7
C8 C8
C9 C9
C10 C10
N11 N11
C12 C12
O13 O13
C14 C14
S15 S15
O16 O16
O17 O17
N18 N18
C19 C19
C20 C20
C21 C21
C22 C22
C23 C23
C24 C24
C25 C25
C26 C26
C27 C27
H11C H11C
H12C H12C
H13C H13C
H4 H4
H71C H71C
H72C H72C
H73C H73C
H9 H9
H11 H11
H141 H141
H142 H142
H143 H143
H19 H19
H201 H201
H202 H202
H203 H203
H211 H211
H212 H212
H23 H23
H24 H24
H25 H25
H26 H26