PDB Chemical Component R5V
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for R5V
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| CAD |
CAB |
1.531 |
1.530 |
| OAL |
NAK |
1.429 |
1.416 |
| CAA |
CAB |
1.528 |
1.531 |
| CAB |
CAC |
1.523 |
1.529 |
| CAB |
CAE |
1.528 |
1.507 |
| NAK |
C |
1.341 |
1.348 |
| O |
C |
1.230 |
1.213 |
| CAE |
N |
1.339 |
1.348 |
| CAE |
OAF |
1.228 |
1.213 |
| C |
CA |
1.532 |
1.507 |
| N |
CA |
1.471 |
1.465 |
| CA |
CAM |
1.404 |
1.506 |
| CAM |
CAN |
1.393 |
1.383 |
| CAM |
CAW |
1.388 |
1.383 |
| CAN |
CAO |
1.396 |
1.380 |
| CAW |
CAV |
1.386 |
1.381 |
| CAO |
CAP |
1.394 |
1.388 |
| CAV |
CAP |
1.387 |
1.388 |
| CAP |
NAQ |
1.333 |
1.402 |
| NAQ |
NAU |
1.214 |
1.401 |
| NAQ |
CAR |
1.332 |
1.352 |
| NAU |
CAT |
1.331 |
1.309 |
| CAR |
CAS |
1.327 |
1.354 |
| CAT |
CAS |
1.326 |
1.399 |
| CAA |
H1 |
1.099 |
1.090 |
| CAA |
H2 |
1.100 |
1.089 |
| CAA |
H3 |
1.100 |
1.090 |
| CAC |
H4 |
1.100 |
1.090 |
| CAC |
H5 |
1.100 |
1.090 |
| CAC |
H6 |
1.100 |
1.090 |
| CAD |
H7 |
1.100 |
1.090 |
| CAD |
H8 |
1.100 |
1.090 |
| CAD |
H9 |
1.100 |
1.090 |
| N |
H10 |
1.000 |
0.970 |
| CA |
H11 |
1.100 |
1.090 |
| NAK |
H12 |
1.000 |
0.970 |
| OAL |
H13 |
0.950 |
0.967 |
| CAW |
H14 |
1.080 |
1.080 |
| CAV |
H15 |
1.080 |
1.080 |
| CAN |
H16 |
1.080 |
1.080 |
| CAO |
H17 |
1.080 |
1.080 |
| CAT |
H18 |
1.080 |
1.080 |
| CAS |
H19 |
1.080 |
1.080 |
| CAR |
H20 |
1.080 |
1.080 |
Bond Angles for R5V
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CAD |
CAB |
CAE |
108.6 |
109.4 |
| OAL |
NAK |
H12 |
121.1 |
120.1 |
| CAA |
CAB |
CAC |
109.6 |
109.5 |
| CAA |
CAB |
CAE |
109.4 |
109.4 |
| CAB |
CAA |
H1 |
109.5 |
109.5 |
| CAB |
CAA |
H2 |
109.4 |
109.5 |
| CAB |
CAA |
H3 |
109.5 |
109.4 |
| CAC |
CAB |
CAE |
110.6 |
109.5 |
| CAB |
CAC |
H4 |
109.5 |
109.5 |
| CAB |
CAC |
H5 |
109.5 |
109.5 |
| CAB |
CAC |
H6 |
109.5 |
109.5 |
| CAB |
CAE |
N |
115.9 |
120.0 |
| CAB |
CAE |
OAF |
120.9 |
120.0 |
| OAF |
CAE |
N |
123.2 |
120.0 |
| CAE |
N |
CA |
119.4 |
120.0 |
| CAE |
N |
H10 |
120.3 |
120.0 |
| C |
CA |
CAM |
113.1 |
109.5 |
| C |
CA |
H11 |
105.2 |
109.4 |
| N |
CA |
CAM |
116.6 |
109.5 |
| CA |
N |
H10 |
120.3 |
119.9 |
| N |
CA |
H11 |
105.9 |
109.4 |
| CA |
CAM |
CAN |
123.3 |
120.0 |
| CA |
CAM |
CAW |
117.4 |
119.9 |
| CAM |
CA |
H11 |
106.6 |
109.5 |
| CAW |
CAM |
CAN |
119.3 |
120.1 |
| CAM |
CAN |
CAO |
119.5 |
120.1 |
| CAM |
CAN |
H16 |
120.2 |
119.9 |
| CAM |
CAW |
CAV |
121.3 |
120.1 |
| CAM |
CAW |
H14 |
119.3 |
120.0 |
| CAN |
CAO |
CAP |
120.6 |
119.9 |
| CAO |
CAN |
H16 |
120.2 |
120.0 |
| CAN |
CAO |
H17 |
119.7 |
120.0 |
| CAW |
CAV |
CAP |
119.6 |
119.9 |
| CAV |
CAW |
H14 |
119.3 |
119.9 |
| CAW |
CAV |
H15 |
120.2 |
120.0 |
| CAV |
CAP |
CAO |
119.6 |
119.9 |
| CAO |
CAP |
NAQ |
121.7 |
120.1 |
| CAP |
CAO |
H17 |
119.7 |
120.0 |
| CAV |
CAP |
NAQ |
118.7 |
120.1 |
| CAP |
CAV |
H15 |
120.2 |
120.0 |
| CAP |
NAQ |
NAU |
125.0 |
126.0 |
| CAP |
NAQ |
CAR |
125.6 |
126.0 |
| NAU |
NAQ |
CAR |
109.4 |
107.9 |
| NAQ |
NAU |
CAT |
110.2 |
108.2 |
| NAQ |
CAR |
CAS |
107.5 |
107.7 |
| NAQ |
CAR |
H20 |
126.2 |
126.2 |
| NAU |
CAT |
CAS |
107.2 |
108.3 |
| NAU |
CAT |
H18 |
126.4 |
125.9 |
| CAR |
CAS |
H19 |
127.1 |
126.0 |
| CAS |
CAT |
H18 |
126.4 |
125.9 |
| CAT |
CAS |
H19 |
127.1 |
126.0 |
| H1 |
CAA |
H2 |
109.5 |
109.6 |
| H1 |
CAA |
H3 |
109.5 |
109.5 |
| H2 |
CAA |
H3 |
109.5 |
109.4 |
| H4 |
CAC |
H5 |
109.5 |
109.4 |
| H4 |
CAC |
H6 |
109.5 |
109.4 |
| H5 |
CAC |
H6 |
109.5 |
109.5 |
| H7 |
CAD |
H8 |
109.4 |
109.5 |
| H7 |
CAD |
H9 |
109.4 |
109.5 |
| H8 |
CAD |
H9 |
109.5 |
109.4 |
Torsion Angles for R5V
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CAA |
CAB |
CAD |
CAE |
240.9 |
119.9 |
| CAD |
CAB |
CAA |
H1 |
180.0 |
180.0 |
| CAD |
CAB |
CAA |
H2 |
300.0 |
300.1 |
| CAD |
CAB |
CAA |
H3 |
60.0 |
60.0 |
| CAC |
CAB |
CAD |
CAE |
120.9 |
240.0 |
| CAD |
CAB |
CAC |
H4 |
180.0 |
300.0 |
| CAD |
CAB |
CAC |
H5 |
300.0 |
60.0 |
| CAD |
CAB |
CAC |
H6 |
60.0 |
180.0 |
| CAD |
CAB |
CAE |
N |
60.7 |
299.9 |
| CAD |
CAB |
CAE |
OAF |
241.4 |
120.0 |
| CAD |
CAB |
CAA |
CAE |
118.6 |
240.1 |
| CAC |
CAB |
CAA |
CAE |
238.6 |
120.0 |
| CAA |
CAB |
CAC |
H4 |
60.4 |
60.0 |
| CAA |
CAB |
CAC |
H5 |
180.4 |
180.0 |
| CAA |
CAB |
CAC |
H6 |
300.4 |
300.1 |
| CAA |
CAB |
CAE |
N |
179.7 |
180.0 |
| CAA |
CAB |
CAE |
OAF |
0.3 |
0.0 |
| H1 |
CAA |
CAB |
H2 |
240.0 |
239.9 |
| H1 |
CAA |
CAB |
H3 |
120.0 |
119.9 |
| H2 |
CAA |
CAB |
H3 |
240.0 |
240.1 |
| CAD |
CAB |
CAC |
CAE |
240.3 |
120.0 |
| CAA |
CAB |
CAC |
CAE |
120.7 |
240.0 |
| CAC |
CAB |
CAA |
H1 |
300.0 |
59.9 |
| CAC |
CAB |
CAA |
H2 |
59.9 |
180.0 |
| CAC |
CAB |
CAA |
H3 |
179.9 |
300.0 |
| CAC |
CAB |
CAE |
N |
300.5 |
60.0 |
| CAC |
CAB |
CAE |
OAF |
121.1 |
240.0 |
| H4 |
CAC |
CAB |
H5 |
240.0 |
240.0 |
| H4 |
CAC |
CAB |
H6 |
120.0 |
119.9 |
| H5 |
CAC |
CAB |
H6 |
240.0 |
239.9 |
| CAA |
CAB |
CAE |
CAC |
239.2 |
120.0 |
| CAE |
CAB |
CAA |
H1 |
61.4 |
299.9 |
| CAE |
CAB |
CAA |
H2 |
181.4 |
60.0 |
| CAE |
CAB |
CAA |
H3 |
301.3 |
180.0 |
| CAE |
CAB |
CAC |
H4 |
299.7 |
180.0 |
| CAE |
CAB |
CAC |
H5 |
59.7 |
300.0 |
| CAE |
CAB |
CAC |
H6 |
179.7 |
60.1 |
| OAF |
CAE |
CAB |
N |
180.7 |
180.1 |
| CAB |
CAE |
N |
CA |
184.5 |
180.0 |
| CAB |
CAE |
N |
H10 |
4.5 |
0.1 |
| NAK |
C |
CA |
CAM |
120.0 |
60.0 |
| NAK |
C |
CA |
H11 |
4.0 |
299.9 |
| O |
C |
CA |
CAM |
297.5 |
240.0 |
| O |
C |
CA |
H11 |
181.5 |
119.9 |
| CAB |
CAE |
N |
OAF |
180.7 |
180.1 |
| CAE |
N |
CA |
CAM |
258.7 |
205.0 |
| CA |
N |
CAE |
H10 |
180.0 |
180.0 |
| CAE |
N |
CA |
H11 |
17.0 |
325.1 |
| CAB |
CAE |
OAF |
N |
179.3 |
179.9 |
| OAF |
CAE |
N |
CA |
3.8 |
360.0 |
| OAF |
CAE |
N |
H10 |
183.8 |
180.0 |
| N |
CA |
C |
CAM |
131.0 |
120.0 |
| C |
CA |
N |
H10 |
309.6 |
265.0 |
| N |
CA |
C |
H11 |
247.0 |
240.1 |
| C |
CA |
CAM |
CAN |
137.4 |
260.0 |
| C |
CA |
CAM |
CAW |
314.7 |
80.3 |
| CAM |
CA |
C |
H11 |
116.0 |
120.0 |
| CAE |
N |
CA |
H10 |
180.0 |
180.0 |
| C |
CA |
N |
CAM |
230.9 |
240.0 |
| C |
CA |
N |
H11 |
112.6 |
119.9 |
| N |
CA |
CAM |
CAN |
10.5 |
140.0 |
| N |
CA |
CAM |
CAW |
187.8 |
320.3 |
| CAM |
CA |
N |
H11 |
241.6 |
239.9 |
| C |
CA |
CAM |
H11 |
244.8 |
240.0 |
| CAM |
CA |
N |
H10 |
78.7 |
25.0 |
| N |
CA |
CAM |
H11 |
118.0 |
120.0 |
| CAW |
CAM |
CA |
CAN |
177.3 |
180.2 |
| CA |
CAM |
CAN |
CAO |
178.6 |
180.0 |
| CA |
CAM |
CAN |
H16 |
358.6 |
0.0 |
| CA |
CAM |
CAW |
CAV |
181.3 |
180.0 |
| CA |
CAM |
CAW |
H14 |
1.3 |
360.0 |
| CA |
CAM |
CAN |
CAW |
177.3 |
180.2 |
| CAN |
CAM |
CA |
H11 |
252.5 |
20.0 |
| CAN |
CAM |
CAW |
CAV |
358.7 |
0.2 |
| CAN |
CAM |
CAW |
H14 |
178.7 |
180.2 |
| CAM |
CAN |
CAO |
CAP |
359.3 |
359.9 |
| CAO |
CAN |
CAM |
H16 |
180.0 |
180.0 |
| CAM |
CAN |
CAO |
H17 |
179.3 |
180.0 |
| CA |
CAM |
CAW |
CAN |
182.6 |
179.8 |
| CAW |
CAM |
CA |
H11 |
69.8 |
200.3 |
| CAW |
CAM |
CAN |
CAO |
1.4 |
359.8 |
| CAW |
CAM |
CAN |
H16 |
181.4 |
179.8 |
| CAM |
CAW |
CAV |
CAP |
0.6 |
0.0 |
| CAV |
CAW |
CAM |
H14 |
180.0 |
180.0 |
| CAM |
CAW |
CAV |
H15 |
180.6 |
180.0 |
| CAM |
CAN |
CAO |
H16 |
180.0 |
180.0 |
| CAV |
CAP |
CAO |
CAN |
359.9 |
0.3 |
| CAN |
CAO |
CAP |
NAQ |
180.9 |
180.0 |
| CAP |
CAO |
CAN |
H17 |
180.0 |
179.9 |
| CAV |
CAW |
CAM |
CAN |
358.7 |
0.2 |
| CAM |
CAW |
CAV |
H14 |
180.0 |
180.0 |
| CAW |
CAV |
CAP |
CAO |
0.1 |
359.7 |
| CAW |
CAV |
CAP |
NAQ |
179.2 |
180.0 |
| CAP |
CAV |
CAW |
H15 |
180.0 |
180.0 |
| CAP |
CAO |
CAN |
H16 |
179.3 |
179.9 |
| CAN |
CAO |
CAP |
H17 |
180.0 |
180.1 |
| CAV |
CAP |
CAO |
NAQ |
179.0 |
180.3 |
| CAO |
CAP |
CAV |
H15 |
180.1 |
179.7 |
| CAO |
CAP |
NAQ |
NAU |
187.0 |
180.3 |
| CAO |
CAP |
NAQ |
CAR |
9.2 |
0.0 |
| CAN |
CAO |
CAP |
CAV |
359.9 |
0.3 |
| CAP |
CAV |
CAW |
H14 |
180.6 |
180.0 |
| CAW |
CAV |
CAP |
H15 |
180.0 |
180.0 |
| CAO |
CAP |
CAV |
NAQ |
180.9 |
179.7 |
| CAV |
CAP |
CAO |
H17 |
179.9 |
180.3 |
| CAV |
CAP |
NAQ |
NAU |
7.9 |
360.0 |
| CAV |
CAP |
NAQ |
CAR |
190.2 |
179.7 |
| CAV |
CAP |
NAQ |
CAO |
181.0 |
179.7 |
| NAQ |
CAP |
CAO |
H17 |
0.9 |
360.0 |
| NAQ |
CAP |
CAV |
H15 |
359.2 |
0.0 |
| NAU |
NAQ |
CAP |
CAR |
177.8 |
180.3 |
| CAP |
NAQ |
NAU |
CAT |
180.9 |
180.0 |
| CAP |
NAQ |
CAR |
CAS |
179.1 |
179.9 |
| CAP |
NAQ |
CAR |
H20 |
359.1 |
0.0 |
| CAP |
NAQ |
NAU |
CAR |
181.9 |
179.8 |
| NAU |
NAQ |
CAR |
CAS |
1.0 |
359.7 |
| NAU |
NAQ |
CAR |
H20 |
181.0 |
179.8 |
| NAQ |
NAU |
CAT |
CAS |
0.6 |
360.0 |
| NAQ |
NAU |
CAT |
H18 |
180.6 |
180.0 |
| CAP |
NAQ |
CAR |
NAU |
178.1 |
180.2 |
| CAR |
NAQ |
NAU |
CAT |
359.0 |
0.2 |
| NAQ |
CAR |
CAS |
H19 |
179.3 |
180.1 |
| CAT |
NAU |
NAQ |
CAR |
359.0 |
0.2 |
| CAS |
CAT |
NAU |
H18 |
180.0 |
179.9 |
| NAU |
CAT |
CAS |
H19 |
180.1 |
180.0 |
| NAQ |
CAR |
CAS |
H20 |
180.0 |
180.1 |
| CAR |
CAS |
CAT |
H18 |
180.0 |
179.8 |
| CAT |
CAS |
CAR |
H19 |
180.0 |
180.2 |
| NAQ |
CAR |
CAS |
CAT |
359.4 |
0.3 |
| NAU |
CAT |
CAS |
H18 |
180.0 |
180.1 |
| CAR |
CAS |
CAT |
H19 |
180.0 |
179.8 |
| H1 |
CAA |
CAB |
CAC |
300.0 |
59.9 |
| H1 |
CAA |
CAB |
CAE |
61.4 |
299.9 |
| CAB |
CAA |
H1 |
H2 |
120.0 |
120.1 |
| CAB |
CAA |
H1 |
H3 |
240.0 |
240.1 |
| H2 |
CAA |
H1 |
H3 |
120.0 |
120.0 |
| H2 |
CAA |
CAB |
CAC |
59.9 |
180.0 |
| H2 |
CAA |
CAB |
CAE |
181.4 |
60.0 |
| CAB |
CAA |
H2 |
H1 |
240.0 |
240.0 |
| CAB |
CAA |
H2 |
H3 |
120.0 |
119.9 |
| H1 |
CAA |
H2 |
H3 |
240.0 |
240.0 |
| H3 |
CAA |
CAB |
CAC |
179.9 |
300.0 |
| H3 |
CAA |
CAB |
CAE |
301.3 |
180.0 |
| CAB |
CAA |
H3 |
H1 |
120.0 |
119.9 |
| CAB |
CAA |
H3 |
H2 |
240.0 |
240.0 |
| H1 |
CAA |
H3 |
H2 |
120.0 |
120.1 |
| H4 |
CAC |
CAB |
CAE |
299.7 |
180.0 |
| CAB |
CAC |
H4 |
H5 |
120.0 |
120.0 |
| CAB |
CAC |
H4 |
H6 |
240.0 |
240.0 |
| H5 |
CAC |
H4 |
H6 |
120.0 |
120.0 |
| H5 |
CAC |
CAB |
CAE |
59.7 |
300.0 |
| CAB |
CAC |
H5 |
H4 |
240.0 |
240.0 |
| CAB |
CAC |
H5 |
H6 |
120.0 |
120.1 |
| H4 |
CAC |
H5 |
H6 |
240.0 |
240.0 |
| H6 |
CAC |
CAB |
CAE |
179.7 |
60.1 |
| CAB |
CAC |
H6 |
H4 |
120.0 |
119.9 |
| CAB |
CAC |
H6 |
H5 |
240.0 |
239.9 |
| H4 |
CAC |
H6 |
H5 |
120.0 |
120.0 |
| H7 |
CAD |
CAB |
CAE |
299.1 |
300.0 |
| H8 |
CAD |
H7 |
H9 |
120.0 |
120.0 |
| H8 |
CAD |
CAB |
CAE |
59.1 |
60.1 |
| H7 |
CAD |
H8 |
H9 |
240.1 |
240.0 |
| H9 |
CAD |
CAB |
CAE |
179.1 |
180.0 |
| H7 |
CAD |
H9 |
H8 |
119.9 |
120.0 |
| CAE |
N |
H10 |
CA |
180.0 |
180.0 |
| H10 |
N |
CA |
CAM |
78.7 |
25.0 |
| H10 |
N |
CA |
H11 |
197.0 |
145.0 |
| C |
CA |
H11 |
CAM |
120.3 |
120.0 |
| N |
CA |
H11 |
CAM |
235.2 |
240.0 |
| H11 |
CA |
N |
H10 |
197.0 |
145.0 |
| H11 |
CA |
CAM |
CAN |
252.5 |
20.0 |
| H11 |
CA |
CAM |
CAW |
69.8 |
200.3 |
| H13 |
OAL |
NAK |
H12 |
179.2 |
360.0 |
| H14 |
CAW |
CAM |
CAN |
178.7 |
180.2 |
| CAM |
CAW |
H14 |
CAV |
180.0 |
180.0 |
| H14 |
CAW |
CAV |
CAP |
180.6 |
180.0 |
| H14 |
CAW |
CAV |
H15 |
0.6 |
360.0 |
| CAW |
CAV |
H15 |
CAP |
180.0 |
180.0 |
| H15 |
CAV |
CAW |
H14 |
0.6 |
360.0 |
| H15 |
CAV |
CAP |
CAO |
180.1 |
179.7 |
| H15 |
CAV |
CAP |
NAQ |
359.2 |
0.0 |
| CAM |
CAN |
H16 |
CAO |
180.0 |
180.0 |
| H16 |
CAN |
CAO |
CAP |
179.3 |
179.9 |
| H16 |
CAN |
CAO |
H17 |
359.3 |
0.0 |
| CAN |
CAO |
H17 |
CAP |
180.0 |
179.9 |
| H17 |
CAO |
CAN |
H16 |
359.3 |
0.0 |
| H17 |
CAO |
CAP |
NAQ |
0.9 |
360.0 |
| NAU |
CAT |
H18 |
CAS |
180.0 |
179.9 |
| H18 |
CAT |
CAS |
H19 |
0.1 |
359.9 |
| H19 |
CAS |
CAT |
H18 |
0.1 |
359.9 |
| NAQ |
CAR |
H20 |
CAS |
180.0 |
179.9 |
| H20 |
CAR |
CAS |
H19 |
359.3 |
0.0 |