PDB Chemical Component R5P

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for R5P

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	O1	1.205	1.208
C1	C2	1.531	1.508
C2	O2	1.428	1.429
C2	C3	1.513	1.529
C3	O3	1.445	1.429
C3	C4	1.535	1.530
C4	O4	1.438	1.430
C4	C5	1.500	1.530
C5	O5	1.419	1.429
O5	P	1.573	1.610
P	O1P	1.487	1.481
P	O2P	1.484	1.610
P	O3P	1.494	1.610
C1	H11	1.080	1.080
C2	HC2	1.100	1.090
O2	HO2	0.950	0.967
C3	HC3	1.100	1.090
O3	HO3	0.950	0.967
C4	HC4	1.100	1.090
O4	HO4	0.949	0.967
C5	H51	1.100	1.090
C5	H52	1.100	1.091
O2P	HOP2	0.950	0.966
O3P	HOP3	0.949	0.967

Bond Angles for R5P

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O1	C1	C2	119.3	120.0
O1	C1	H11	120.3	120.0
C1	C2	O2	113.1	109.5
C1	C2	C3	107.9	109.5
C2	C1	H11	120.4	120.0
C1	C2	HC2	110.3	109.4
O2	C2	C3	103.0	109.5
O2	C2	HC2	111.8	109.5
C2	O2	HO2	109.5	114.0
C2	C3	O3	114.5	109.5
C2	C3	C4	98.3	109.5
C3	C2	HC2	110.5	109.4
C2	C3	HC3	102.0	109.4
O3	C3	C4	133.4	109.5
O3	C3	HC3	102.5	109.5
C3	O3	HO3	109.5	114.0
C3	C4	O4	130.7	109.5
C3	C4	C5	97.3	109.5
C4	C3	HC3	101.8	109.4
C3	C4	HC4	103.5	109.5
O4	C4	C5	114.1	109.5
O4	C4	HC4	104.5	109.4
C4	O4	HO4	109.5	114.0
C4	C5	O5	106.8	109.5
C5	C4	HC4	103.8	109.5
C4	C5	H51	110.1	109.5
C4	C5	H52	110.1	109.5
C5	O5	P	126.3	123.0
O5	C5	H51	110.1	109.5
O5	C5	H52	110.1	109.5
O5	P	O1P	104.1	109.4
O5	P	O2P	103.4	109.5
O5	P	O3P	108.1	109.5
O1P	P	O2P	113.4	109.5
O1P	P	O3P	113.3	109.4
O2P	P	O3P	113.5	109.5
P	O2P	HOP2	109.5	114.0
P	O3P	HOP3	109.5	114.0
H51	C5	H52	109.5	109.5

Torsion Angles for R5P

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O1	C1	C2	O2	294.2	0.0
O1	C1	C2	C3	180.9	240.0
C2	C1	O1	H11	180.0	180.2
O1	C1	C2	HC2	60.2	120.0
O1	C1	C2	H11	180.0	179.8
O2	C2	C1	C3	113.3	120.1
O2	C2	C1	HC2	234.0	240.0
C1	C2	O2	HO2	24.3	299.9
C1	C2	C3	O3	82.5	300.0
C1	C2	C3	C4	296.3	180.0
C3	C2	C1	HC2	120.8	119.9
C1	C2	C3	HC3	192.3	60.1
C1	C2	O2	C3	243.8	240.0
O2	C2	C1	H11	114.2	180.3
C1	C2	O2	HC2	125.2	120.0
O2	C2	C3	O3	322.6	180.0
O2	C2	C3	C4	176.5	60.0
C3	C2	O2	HC2	241.3	240.0
O2	C2	C3	HC3	72.5	300.1
C1	C2	C3	O2	119.8	120.0
C3	C2	C1	H11	0.9	60.2
C1	C2	C3	HC2	239.4	240.1
O2	C2	C3	HC2	119.5	120.1
C3	C2	O2	HO2	140.5	59.9
O3	C3	C2	C4	146.1	120.0
O3	C3	C2	HC3	250.1	239.9
C2	C3	O3	HO3	180.0	300.1
C2	C3	C4	O4	311.3	300.0
C2	C3	C4	C5	180.5	180.0
C4	C3	C2	HC3	104.0	119.9
C2	C3	C4	HC4	74.3	60.0
C2	C3	O3	C4	229.4	240.0
O3	C3	C2	HC2	203.1	59.9
C2	C3	O3	HC3	109.6	120.0
O3	C3	C4	O4	175.5	180.0
O3	C3	C4	C5	44.7	60.0
C4	C3	O3	HC3	240.2	240.0
O3	C3	C4	HC4	298.6	299.9
C2	C3	C4	O3	135.8	120.1
C4	C3	C2	HC2	56.9	299.9
C2	C3	C4	HC3	255.8	240.1
O3	C3	C4	HC3	120.1	120.0
C4	C3	O3	HO3	310.6	60.1
O4	C4	C3	C5	130.8	120.0
O4	C4	C3	HC4	237.0	240.0
C3	C4	O4	HO4	180.0	300.0
C3	C4	C5	O5	190.8	185.0
C5	C4	C3	HC4	106.2	120.0
C3	C4	C5	H51	310.4	305.0
C3	C4	C5	H52	71.2	65.0
C3	C4	O4	C5	235.3	239.9
O4	C4	C3	HC3	55.5	60.0
C3	C4	O4	HC4	122.6	120.0
O4	C4	C5	O5	49.8	64.9
C5	C4	O4	HC4	247.3	240.0
O4	C4	C5	H51	169.4	185.0
O4	C4	C5	H52	290.2	305.0
C3	C4	C5	O4	141.0	120.0
C5	C4	C3	HC3	284.6	300.0
C3	C4	C5	HC4	254.1	240.0
O4	C4	C5	HC4	113.1	119.9
C5	C4	O4	HO4	304.6	60.1
C4	C5	O5	P	185.5	180.0
O5	C5	C4	H51	240.4	239.9
O5	C5	C4	H52	119.6	120.0
H51	C5	C4	H52	239.1	240.0
O5	C5	C4	HC4	296.7	305.0
C4	C5	O5	H51	119.6	120.0
C4	C5	O5	H52	240.4	240.0
C5	O5	P	O1P	159.9	55.1
C5	O5	P	O2P	278.6	175.0
C5	O5	P	O3P	39.2	295.1
H51	C5	O5	H52	120.9	120.0
P	O5	C5	H51	65.9	59.9
P	O5	C5	H52	305.0	299.9
O1P	P	O5	O2P	241.3	240.0
O1P	P	O5	O3P	120.7	120.0
O2P	P	O5	O3P	239.4	239.9
O5	P	O2P	HOP2	247.9	180.0
O5	P	O3P	HOP3	114.8	300.0
O5	P	O1P	O2P	111.7	120.0
O5	P	O1P	O3P	242.9	240.0
O2P	P	O1P	O3P	131.2	120.0
O1P	P	O2P	HOP2	360.0	300.0
O1P	P	O3P	HOP3	0.0	180.0
O5	P	O2P	O1P	247.9	240.0
O5	P	O2P	O3P	116.8	120.1
O1P	P	O2P	O3P	228.9	240.0
O2P	P	O3P	HOP3	228.8	60.1
O5	P	O3P	O1P	114.8	120.0
O5	P	O3P	O2P	245.9	240.0
O1P	P	O3P	O2P	131.2	120.0
O3P	P	O2P	HOP2	131.1	59.9
O1	C1	H11	C2	180.0	180.2
H11	C1	C2	O2	114.2	180.3
H11	C1	C2	C3	0.9	60.2
H11	C1	C2	HC2	240.2	300.3
C1	C2	HC2	O2	233.3	240.0
C1	C2	HC2	C3	119.2	120.0
HC2	C2	C1	H11	240.2	300.3
O2	C2	HC2	C3	245.9	239.9
HC2	C2	O2	HO2	259.2	180.0
HC2	C2	C3	O3	203.1	59.9
HC2	C2	C3	C4	56.9	299.9
HC2	C2	C3	HC3	313.0	180.0
HO2	O2	C2	C3	140.5	59.9
HO2	O2	C2	HC2	259.2	180.0
C2	C3	HC3	O3	241.2	239.9
C2	C3	HC3	C4	101.3	120.0
HC3	C3	C2	HC2	313.0	180.0
O3	C3	HC3	C4	220.1	240.0
HC3	C3	O3	HO3	70.5	180.0
HC3	C3	C4	O4	55.5	60.0
HC3	C3	C4	C5	284.6	300.0
HC3	C3	C4	HC4	178.5	180.0
HO3	O3	C3	C4	310.6	60.1
HO3	O3	C3	HC3	70.5	180.0
C3	C4	HC4	O4	221.1	240.0
C3	C4	HC4	C5	101.2	120.0
HC4	C4	C3	HC3	178.5	180.0
O4	C4	HC4	C5	240.1	240.0
HC4	C4	O4	HO4	57.4	180.0
HC4	C4	C5	O5	296.7	305.0
HC4	C4	C5	H51	56.3	65.1
HC4	C4	C5	H52	177.1	185.0
HO4	O4	C4	C5	304.6	60.1
HO4	O4	C4	HC4	57.4	180.0
C4	C5	H51	O5	242.5	239.9
H51	C5	C4	HC4	56.3	65.1
C4	C5	H51	H52	121.2	120.0
H51	C5	O5	P	65.9	59.9
O5	C5	H51	H52	238.7	240.0
C4	C5	H52	O5	117.5	120.0
H52	C5	C4	HC4	177.1	185.0
C4	C5	H52	H51	238.8	240.0
H52	C5	O5	P	305.0	299.9
O5	C5	H52	H51	121.3	120.0
HOP2	O2P	P	O3P	131.1	59.9