PDB Chemical Component R4M
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for R4M
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C19 |
C9 |
1.535 |
1.507 |
| C10 |
C9 |
1.387 |
1.332 |
| C10 |
C11 |
1.469 |
1.507 |
| C9 |
C8 |
1.476 |
1.466 |
| C12 |
C11 |
1.395 |
1.530 |
| C12 |
C13 |
1.462 |
1.507 |
| C14 |
C13 |
1.394 |
1.331 |
| C14 |
C15 |
1.470 |
1.470 |
| C8 |
C7 |
1.389 |
1.346 |
| C13 |
C20 |
1.537 |
1.508 |
| C15 |
O1 |
1.246 |
1.215 |
| C15 |
O2 |
1.255 |
1.347 |
| C7 |
C2' |
1.528 |
1.514 |
| C7 |
C6 |
1.468 |
1.477 |
| C1 |
C6 |
1.388 |
1.397 |
| C1 |
C2 |
1.388 |
1.379 |
| C2' |
C1' |
1.533 |
1.534 |
| C6 |
C5 |
1.379 |
1.396 |
| C2 |
C3 |
1.391 |
1.384 |
| C1' |
C18 |
1.529 |
1.527 |
| C5 |
C18 |
1.524 |
1.504 |
| C5 |
C4 |
1.393 |
1.383 |
| C3 |
C4 |
1.384 |
1.382 |
| C18 |
C4' |
1.528 |
1.530 |
| C2' |
H1 |
1.100 |
1.090 |
| C2' |
H2 |
1.101 |
1.090 |
| C1' |
H3 |
1.100 |
1.090 |
| C1' |
H4 |
1.100 |
1.090 |
| C18 |
H5 |
1.100 |
1.089 |
| C4' |
H6 |
1.100 |
1.091 |
| C4' |
H7 |
1.100 |
1.089 |
| C4' |
H8 |
1.100 |
1.090 |
| C4 |
H9 |
1.080 |
1.081 |
| C3 |
H10 |
1.080 |
1.080 |
| C2 |
H11 |
1.080 |
1.080 |
| C1 |
H12 |
1.080 |
1.080 |
| C8 |
H13 |
1.080 |
1.080 |
| C19 |
H14 |
1.100 |
1.090 |
| C19 |
H15 |
1.100 |
1.090 |
| C19 |
H16 |
1.100 |
1.090 |
| C10 |
H17 |
1.080 |
1.081 |
| C11 |
H18 |
1.100 |
1.090 |
| C11 |
H19 |
1.100 |
1.090 |
| C12 |
H20 |
1.100 |
1.090 |
| C12 |
H21 |
1.100 |
1.091 |
| C20 |
H22 |
1.100 |
1.090 |
| C20 |
H23 |
1.099 |
1.089 |
| C20 |
H24 |
1.100 |
1.090 |
| C14 |
H25 |
1.080 |
1.079 |
| O2 |
H26 |
0.950 |
0.966 |
Bond Angles for R4M
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C11 |
C10 |
H17 |
116.3 |
120.0 |
| C10 |
C11 |
H18 |
108.5 |
109.4 |
| C10 |
C11 |
H19 |
108.5 |
109.5 |
| C9 |
C8 |
H13 |
117.4 |
120.0 |
| C12 |
C11 |
H18 |
108.5 |
109.5 |
| C12 |
C11 |
H19 |
108.5 |
109.5 |
| C12 |
C13 |
C20 |
120.8 |
120.0 |
| C13 |
C12 |
H20 |
105.3 |
109.5 |
| C13 |
C12 |
H21 |
105.4 |
109.5 |
| C14 |
C15 |
O1 |
116.7 |
120.0 |
| C14 |
C15 |
O2 |
119.1 |
120.0 |
| C15 |
C14 |
H25 |
119.2 |
120.0 |
| C13 |
C20 |
H22 |
109.5 |
109.5 |
| C13 |
C20 |
H23 |
109.5 |
109.5 |
| C13 |
C20 |
H24 |
109.5 |
109.4 |
| O1 |
C15 |
O2 |
124.2 |
120.0 |
| C15 |
O2 |
H26 |
109.5 |
117.0 |
| C7 |
C2' |
H1 |
109.1 |
109.9 |
| C7 |
C2' |
H2 |
109.1 |
109.9 |
| C6 |
C1 |
H12 |
120.2 |
120.1 |
| C1 |
C2 |
H11 |
120.3 |
120.0 |
| C2' |
C1' |
C18 |
112.3 |
109.4 |
| C1' |
C2' |
H1 |
109.1 |
109.9 |
| C1' |
C2' |
H2 |
109.1 |
109.8 |
| C2' |
C1' |
H3 |
108.7 |
109.5 |
| C2' |
C1' |
H4 |
108.8 |
109.5 |
| C2 |
C3 |
H10 |
120.0 |
119.8 |
| C1' |
C18 |
C4' |
110.9 |
109.1 |
| C18 |
C1' |
H3 |
108.7 |
109.5 |
| C18 |
C1' |
H4 |
108.8 |
109.5 |
| C1' |
C18 |
H5 |
107.8 |
109.1 |
| C5 |
C18 |
H5 |
107.8 |
109.1 |
| C5 |
C4 |
H9 |
119.4 |
119.8 |
| C3 |
C4 |
H9 |
119.5 |
119.8 |
| C4' |
C18 |
H5 |
107.8 |
109.1 |
| C18 |
C4' |
H6 |
109.5 |
109.5 |
| C18 |
C4' |
H7 |
109.5 |
109.5 |
| C18 |
C4' |
H8 |
109.5 |
109.4 |
| H1 |
C2' |
H2 |
109.5 |
109.8 |
| H3 |
C1' |
H4 |
109.5 |
109.5 |
| H6 |
C4' |
H7 |
109.5 |
109.5 |
| H6 |
C4' |
H8 |
109.4 |
109.4 |
| H7 |
C4' |
H8 |
109.5 |
109.5 |
| H14 |
C19 |
H15 |
109.5 |
109.5 |
| H14 |
C19 |
H16 |
109.5 |
109.5 |
| H15 |
C19 |
H16 |
109.5 |
109.5 |
| H18 |
C11 |
H19 |
109.5 |
109.5 |
| H20 |
C12 |
H21 |
109.5 |
109.4 |
| H22 |
C20 |
H23 |
109.5 |
109.5 |
| H22 |
C20 |
H24 |
109.4 |
109.5 |
| H23 |
C20 |
H24 |
109.5 |
109.5 |
Torsion Angles for R4M
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C19 |
C9 |
C8 |
H13 |
294.4 |
245.7 |
| C10 |
C9 |
C8 |
H13 |
115.6 |
65.7 |
| C12 |
C11 |
C10 |
H18 |
239.5 |
240.0 |
| C12 |
C11 |
C10 |
H19 |
120.5 |
120.0 |
| H18 |
C11 |
C10 |
H19 |
241.1 |
240.0 |
| C12 |
C11 |
C10 |
H17 |
356.8 |
306.0 |
| C10 |
C11 |
C12 |
H18 |
120.5 |
120.0 |
| C10 |
C11 |
C12 |
H19 |
239.5 |
240.0 |
| H18 |
C11 |
C12 |
H19 |
118.9 |
120.0 |
| C13 |
C12 |
C11 |
H18 |
60.4 |
60.0 |
| C13 |
C12 |
C11 |
H19 |
301.5 |
300.0 |
| C12 |
C13 |
C20 |
H22 |
180.0 |
95.5 |
| C12 |
C13 |
C20 |
H23 |
300.0 |
215.5 |
| C12 |
C13 |
C20 |
H24 |
60.0 |
335.5 |
| H20 |
C12 |
C13 |
H21 |
115.7 |
120.0 |
| C14 |
C13 |
C12 |
H20 |
47.7 |
335.0 |
| C14 |
C13 |
C12 |
H21 |
292.0 |
215.0 |
| C14 |
C13 |
C20 |
H22 |
359.8 |
275.5 |
| C14 |
C13 |
C20 |
H23 |
119.8 |
35.5 |
| C14 |
C13 |
C20 |
H24 |
239.8 |
155.6 |
| O1 |
C15 |
C14 |
O2 |
178.9 |
180.0 |
| C14 |
C15 |
O2 |
H26 |
178.8 |
179.9 |
| C8 |
C7 |
C2' |
H1 |
286.4 |
18.0 |
| C8 |
C7 |
C2' |
H2 |
45.9 |
256.9 |
| C20 |
C13 |
C12 |
H20 |
227.5 |
155.0 |
| C20 |
C13 |
C12 |
H21 |
111.8 |
35.0 |
| H22 |
C20 |
C13 |
H23 |
240.0 |
240.0 |
| H22 |
C20 |
C13 |
H24 |
120.0 |
120.0 |
| H23 |
C20 |
C13 |
H24 |
240.0 |
240.0 |
| C14 |
C15 |
O1 |
O2 |
181.1 |
180.0 |
| O1 |
C15 |
C14 |
H25 |
335.0 |
186.2 |
| O1 |
C15 |
O2 |
H26 |
360.0 |
360.0 |
| C14 |
C15 |
O2 |
O1 |
178.9 |
180.0 |
| O2 |
C15 |
C14 |
H25 |
156.1 |
6.3 |
| C1' |
C2' |
C7 |
H1 |
239.7 |
119.5 |
| C1' |
C2' |
C7 |
H2 |
120.2 |
240.5 |
| C7 |
C2' |
C1' |
H3 |
166.8 |
183.9 |
| C7 |
C2' |
C1' |
H4 |
285.9 |
304.1 |
| H1 |
C2' |
C7 |
H2 |
240.5 |
121.0 |
| C6 |
C7 |
C2' |
H1 |
106.3 |
198.0 |
| C6 |
C7 |
C2' |
H2 |
225.8 |
77.0 |
| C7 |
C6 |
C1 |
H12 |
350.8 |
0.5 |
| C6 |
C1 |
C2 |
H11 |
179.5 |
180.0 |
| C1 |
C2 |
C3 |
H10 |
180.5 |
180.0 |
| C7 |
C2' |
C1' |
H1 |
120.2 |
240.5 |
| C7 |
C2' |
C1' |
H2 |
239.8 |
119.5 |
| C2' |
C1' |
C18 |
C4' |
183.7 |
184.9 |
| C18 |
C1' |
C2' |
H3 |
239.6 |
240.0 |
| C18 |
C1' |
C2' |
H4 |
120.4 |
119.9 |
| C2' |
C1' |
C18 |
H5 |
66.0 |
65.7 |
| H1 |
C2' |
C1' |
H2 |
119.6 |
239.1 |
| H3 |
C1' |
C2' |
H4 |
240.9 |
239.9 |
| C6 |
C5 |
C18 |
H5 |
266.8 |
262.3 |
| C6 |
C5 |
C4 |
H9 |
179.1 |
180.2 |
| C2 |
C3 |
C4 |
H9 |
180.2 |
180.0 |
| C18 |
C1' |
C2' |
H1 |
286.1 |
183.5 |
| C18 |
C1' |
C2' |
H2 |
166.6 |
304.5 |
| C2' |
C1' |
C18 |
H3 |
120.4 |
120.0 |
| C2' |
C1' |
C18 |
H4 |
239.6 |
240.1 |
| C5 |
C18 |
C1' |
H5 |
241.8 |
239.6 |
| C4' |
C18 |
C1' |
H5 |
117.8 |
119.2 |
| C1' |
C18 |
C4' |
H6 |
180.0 |
59.9 |
| C1' |
C18 |
C4' |
H7 |
300.0 |
180.0 |
| C1' |
C18 |
C4' |
H8 |
60.0 |
300.0 |
| H3 |
C1' |
C18 |
H4 |
119.1 |
120.1 |
| C5 |
C18 |
C1' |
H3 |
187.3 |
185.4 |
| C5 |
C18 |
C1' |
H4 |
68.2 |
65.3 |
| C1' |
C18 |
C5 |
H5 |
118.1 |
120.4 |
| C4' |
C18 |
C5 |
H5 |
242.3 |
240.9 |
| C5 |
C18 |
C4' |
H6 |
55.5 |
298.2 |
| C5 |
C18 |
C4' |
H7 |
175.5 |
58.3 |
| C5 |
C18 |
C4' |
H8 |
295.5 |
178.3 |
| C4 |
C5 |
C18 |
H5 |
84.9 |
82.3 |
| C3 |
C4 |
C5 |
H9 |
180.0 |
180.0 |
| C5 |
C4 |
C3 |
H9 |
180.0 |
180.0 |
| C4' |
C18 |
C1' |
H3 |
63.3 |
64.9 |
| C4' |
C18 |
C1' |
H4 |
304.2 |
304.8 |
| C1' |
C18 |
C4' |
H5 |
242.2 |
240.8 |
| C5 |
C18 |
C4' |
H5 |
117.8 |
119.1 |
| H6 |
C4' |
C18 |
H7 |
240.0 |
239.9 |
| H6 |
C4' |
C18 |
H8 |
120.0 |
119.9 |
| H7 |
C4' |
C18 |
H8 |
240.0 |
240.0 |
| C7 |
C2' |
H1 |
H2 |
119.3 |
238.9 |
| H1 |
C2' |
C1' |
C18 |
286.1 |
183.5 |
| C1' |
C2' |
H1 |
H2 |
240.7 |
120.9 |
| H1 |
C2' |
C1' |
H3 |
46.5 |
303.5 |
| H1 |
C2' |
C1' |
H4 |
165.7 |
63.6 |
| C7 |
C2' |
H2 |
H1 |
240.7 |
121.1 |
| H2 |
C2' |
C1' |
C18 |
166.6 |
304.5 |
| C1' |
C2' |
H2 |
H1 |
119.3 |
239.0 |
| H2 |
C2' |
C1' |
H3 |
287.0 |
64.4 |
| H2 |
C2' |
C1' |
H4 |
46.1 |
184.5 |
| C2' |
C1' |
H3 |
C18 |
237.4 |
240.1 |
| H3 |
C1' |
C2' |
H1 |
46.5 |
303.5 |
| H3 |
C1' |
C2' |
H2 |
287.0 |
64.4 |
| C2' |
C1' |
H3 |
H4 |
118.7 |
120.1 |
| H3 |
C1' |
C18 |
C4' |
63.3 |
64.9 |
| C18 |
C1' |
H3 |
H4 |
241.3 |
239.9 |
| H3 |
C1' |
C18 |
H5 |
305.5 |
305.7 |
| C2' |
C1' |
H4 |
C18 |
122.6 |
119.9 |
| H4 |
C1' |
C2' |
H1 |
165.7 |
63.6 |
| H4 |
C1' |
C2' |
H2 |
46.1 |
184.5 |
| C2' |
C1' |
H4 |
H3 |
241.3 |
239.9 |
| H4 |
C1' |
C18 |
C4' |
304.2 |
304.8 |
| C18 |
C1' |
H4 |
H3 |
118.7 |
120.1 |
| H4 |
C1' |
C18 |
H5 |
186.4 |
185.6 |
| C1' |
C18 |
H5 |
C4' |
119.8 |
119.2 |
| H5 |
C18 |
C1' |
H3 |
305.5 |
305.7 |
| H5 |
C18 |
C1' |
H4 |
186.4 |
185.6 |
| H5 |
C18 |
C4' |
H6 |
297.7 |
179.1 |
| H5 |
C18 |
C4' |
H7 |
57.8 |
299.2 |
| H5 |
C18 |
C4' |
H8 |
177.8 |
59.2 |
| H6 |
C4' |
C18 |
H5 |
297.7 |
179.1 |
| C18 |
C4' |
H6 |
H7 |
120.0 |
120.0 |
| C18 |
C4' |
H6 |
H8 |
240.0 |
240.1 |
| H7 |
C4' |
H6 |
H8 |
120.0 |
120.0 |
| H7 |
C4' |
C18 |
H5 |
57.8 |
299.2 |
| C18 |
C4' |
H7 |
H6 |
240.0 |
240.0 |
| C18 |
C4' |
H7 |
H8 |
120.0 |
120.0 |
| H6 |
C4' |
H7 |
H8 |
240.0 |
240.0 |
| H8 |
C4' |
C18 |
H5 |
177.8 |
59.2 |
| C18 |
C4' |
H8 |
H6 |
120.0 |
119.9 |
| C18 |
C4' |
H8 |
H7 |
240.0 |
240.0 |
| H6 |
C4' |
H8 |
H7 |
120.0 |
120.1 |
| H10 |
C3 |
C4 |
H9 |
0.2 |
360.0 |
| H11 |
C2 |
C3 |
H10 |
0.5 |
359.9 |
| H12 |
C1 |
C2 |
H11 |
359.5 |
0.0 |
| H15 |
C19 |
H14 |
H16 |
120.0 |
120.1 |
| H14 |
C19 |
H15 |
H16 |
240.0 |
239.9 |
| H14 |
C19 |
H16 |
H15 |
120.0 |
120.1 |
| H17 |
C10 |
C11 |
H18 |
117.3 |
66.0 |
| H17 |
C10 |
C11 |
H19 |
236.2 |
186.0 |
| H18 |
C11 |
C10 |
H17 |
117.3 |
66.0 |
| C10 |
C11 |
H18 |
H19 |
118.3 |
120.0 |
| C12 |
C11 |
H18 |
H19 |
241.7 |
240.0 |
| H19 |
C11 |
C10 |
H17 |
236.2 |
186.0 |
| C10 |
C11 |
H19 |
H18 |
241.7 |
240.0 |
| C12 |
C11 |
H19 |
H18 |
118.3 |
120.0 |
| H20 |
C12 |
C11 |
H18 |
182.6 |
180.1 |
| H20 |
C12 |
C11 |
H19 |
63.6 |
60.0 |
| H20 |
C12 |
C13 |
C20 |
227.5 |
155.0 |
| C13 |
C12 |
H20 |
H21 |
247.1 |
240.0 |
| H21 |
C12 |
C11 |
H18 |
298.3 |
300.0 |
| H21 |
C12 |
C11 |
H19 |
179.3 |
180.0 |
| H21 |
C12 |
C13 |
C20 |
111.8 |
35.0 |
| C13 |
C12 |
H21 |
H20 |
112.8 |
120.0 |
| C13 |
C20 |
H22 |
H23 |
120.0 |
120.0 |
| C13 |
C20 |
H22 |
H24 |
240.0 |
240.1 |
| H23 |
C20 |
H22 |
H24 |
120.0 |
120.1 |
| C13 |
C20 |
H23 |
H22 |
240.0 |
240.0 |
| C13 |
C20 |
H23 |
H24 |
120.0 |
120.0 |
| H22 |
C20 |
H23 |
H24 |
240.0 |
240.0 |
| C13 |
C20 |
H24 |
H22 |
120.0 |
120.0 |
| C13 |
C20 |
H24 |
H23 |
240.0 |
240.0 |
| H22 |
C20 |
H24 |
H23 |
120.0 |
120.1 |
| H25 |
C14 |
C15 |
O1 |
335.0 |
186.2 |
| H25 |
C14 |
C15 |
O2 |
156.1 |
6.3 |