PDB Chemical Component R39

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for R39

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
CAO CAR 1.538 1.531
CAR NBG 1.483 1.470
CAR HAR 1.100 1.090
CAR HARA 1.100 1.091
CAO OAX 1.450 1.431
CAO HAO 1.101 1.090
CAO HAOA 1.100 1.090
OAX CAP 1.444 1.430
CAS CAP 1.543 1.532
CAP HAP 1.100 1.091
CAP HAPA 1.100 1.089
NBG CAS 1.483 1.470
CAS HAS 1.101 1.090
CAS HASA 1.099 1.090
CAT NBG 1.458 1.469
CAT CAQ 1.520 1.530
CAT HAT 1.100 1.090
CAT HATA 1.100 1.090
CAQ OAY 1.442 1.429
CAQ HAQ 1.100 1.089
CAQ HAQA 1.100 1.090
OAY CBC 1.362 1.360
CAJ CBC 1.392 1.387
CBC CAK 1.383 1.387
CAK CAI 1.392 1.381
CAK HAK 1.080 1.081
CBB CAI 1.371 1.389
CAI HAI 1.080 1.080
CAJ CAH 1.396 1.382
CAJ HAJ 1.080 1.080
CAH CBB 1.396 1.388
CAH HAH 1.080 1.080
CBB NAV 1.358 1.401
NAV CAZ 1.321 1.348
NAV HNAV 1.000 0.970
OAE CAZ 1.236 1.216
CAZ NAW 1.349 1.348
NAW CBE 1.349 1.394
NAW HNAW 1.000 0.970
CBE CAN 1.365 1.361
CBE NBH 1.339 1.362
CAN CBF 1.345 1.398
CAN HAN 1.080 1.079
CBF NAU 1.343 1.309
CBF CBI 1.542 1.506
CAD CBI 1.517 1.530
CBI CAC 1.534 1.531
CBI CAB 1.548 1.530
CAC HAC 1.101 1.090
CAC HACA 1.100 1.090
CAC HACB 1.100 1.090
CAD HAD 1.100 1.090
CAD HADA 1.100 1.090
CAD HADB 1.100 1.090
CAB HAB 1.100 1.091
CAB HABA 1.100 1.090
CAB HABB 1.100 1.089
NBH NAU 1.250 1.401
NBH CBD 1.361 1.402
CAL CBD 1.398 1.388
CBD CAM 1.420 1.388
CAL CAF 1.412 1.381
CAL HAL 1.080 1.079
CAF CBA 1.402 1.383
CAF HAF 1.080 1.081
CBA CAA 1.533 1.507
CBA CAG 1.405 1.382
CAA HAA 1.100 1.090
CAA HAAA 1.100 1.090
CAA HAAB 1.100 1.090
CAM CAG 1.407 1.381
CAG HAG 1.080 1.080
CAM HAM 1.080 1.080

Bond Angles for R39

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
CAO CAR NBG 110.1 109.3
CAO CAR HAR 109.3 109.5
CAO CAR HARA 109.1 109.5
NBG CAR HAR 109.2 109.5
NBG CAR HARA 109.1 109.5
CAR NBG CAS 115.0 110.7
HAR CAR HARA 110.0 109.5
OAX CAO HAO 110.1 109.5
OAX CAO HAOA 110.5 109.5
CAO OAX CAP 115.2 113.7
HAO CAO HAOA 108.0 109.5
OAX CAP HAP 108.4 109.5
OAX CAP HAPA 107.7 109.5
CAS CAP HAP 108.5 109.5
CAS CAP HAPA 107.7 109.6
HAP CAP HAPA 112.0 109.5
NBG CAS HAS 108.8 109.5
NBG CAS HASA 108.3 109.6
HAS CAS HASA 111.1 109.5
CAQ CAT HAT 109.8 109.4
CAQ CAT HATA 110.0 109.5
CAT CAQ OAY 103.7 109.5
CAT CAQ HAQ 111.4 109.5
CAT CAQ HAQA 112.7 109.4
HAT CAT HATA 108.8 109.5
OAY CAQ HAQ 111.5 109.5
OAY CAQ HAQA 112.7 109.4
CAQ OAY CBC 114.2 117.0
HAQ CAQ HAQA 105.1 109.5
OAY CBC CAK 116.8 120.0
CBC CAK CAI 121.3 120.0
CBC CAK HAK 119.3 120.0
CAI CAK HAK 119.4 120.0
CAK CAI HAI 119.8 120.0
CBB CAI HAI 119.8 120.1
CAH CAJ HAJ 120.7 120.0
CAJ CAH CBB 121.9 120.0
CAJ CAH HAH 119.0 120.0
CBB CAH HAH 119.1 120.0
CAH CBB NAV 119.3 120.0
CBB NAV CAZ 123.2 120.0
CBB NAV HNAV 118.4 120.0
CAZ NAV HNAV 118.4 120.0
NAV CAZ NAW 117.1 120.0
OAE CAZ NAW 122.2 120.0
CAZ NAW CBE 125.2 120.0
CAZ NAW HNAW 117.4 120.0
CBE NAW HNAW 117.4 120.1
NAW CBE CAN 128.8 126.3
NAW CBE NBH 123.4 126.2
CAN CBE NBH 107.7 107.4
CBE CAN CBF 104.4 107.9
CBE CAN HAN 127.8 126.1
CBE NBH NAU 110.2 107.8
CBE NBH CBD 126.7 126.1
CBF CAN HAN 127.8 126.1
CAN CBF NAU 109.1 108.5
CAN CBF CBI 128.4 125.7
CBI CBF NAU 122.6 125.8
CBF CBI CAC 112.4 109.5
CBF CBI CAB 108.6 109.5
CAD CBI CAB 111.1 109.4
CAC CBI CAB 107.3 109.5
CBI CAC HAC 109.5 109.4
CBI CAC HACA 109.4 109.5
CBI CAC HACB 109.5 109.5
CBI CAB HAB 109.5 109.4
CBI CAB HABA 109.5 109.5
CBI CAB HABB 109.5 109.5
HAC CAC HACA 109.5 109.5
HAC CAC HACB 109.4 109.5
HACA CAC HACB 109.5 109.5
HAD CAD HADA 109.4 109.4
HAD CAD HADB 109.5 109.4
HADA CAD HADB 109.5 109.5
HAB CAB HABA 109.5 109.5
HAB CAB HABB 109.5 109.4
HABA CAB HABB 109.5 109.5
NBH CBD CAM 118.9 120.0
CAL CBD CAM 120.1 119.9
CBD CAM CAG 120.0 119.9
CBD CAM HAM 120.0 120.0
CAF CAL HAL 119.9 120.0
CAL CAF CBA 119.1 120.1
CAL CAF HAF 120.4 120.0
CBA CAF HAF 120.5 119.9
CAF CBA CAA 119.6 119.9
CAF CBA CAG 121.5 120.1
CAA CBA CAG 118.9 119.9
CBA CAA HAA 109.5 109.5
CBA CAA HAAA 109.4 109.5
CBA CAA HAAB 109.4 109.5
CBA CAG HAG 120.5 120.0
HAA CAA HAAA 109.5 109.4
HAA CAA HAAB 109.5 109.4
HAAA CAA HAAB 109.5 109.5
CAM CAG HAG 120.5 119.9

Torsion Angles for R39

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
NBG CAR CAO HAR 240.0 240.0
NBG CAR CAO HARA 119.7 120.0
CAO CAR NBG CAS 347.9 58.7
HAR CAR CAO HARA 239.7 239.9
CAO CAR NBG HAR 120.0 120.0
CAO CAR NBG HARA 240.3 240.1
HAR CAR NBG HARA 120.3 120.1
CAR NBG CAS HAS 198.9 181.5
CAR NBG CAS HASA 78.0 61.3
CAO CAR HAR NBG 239.4 240.2
CAO CAR HAR HARA 119.7 120.1
NBG CAR HAR HARA 240.3 239.9
HAR CAR NBG CAS 227.8 298.7
CAO CAR HARA NBG 120.4 119.8
CAO CAR HARA HAR 240.2 239.9
NBG CAR HARA HAR 119.8 120.1
HARA CAR NBG CAS 107.6 178.6
OAX CAO CAR NBG 61.6 303.1
OAX CAO CAR HAR 181.6 63.1
OAX CAO CAR HARA 301.9 183.2
HAO CAO OAX HAOA 119.2 120.1
CAO OAX CAP HAP 121.9 61.2
CAO OAX CAP HAPA 243.3 181.3
HAO CAO CAR NBG 181.6 63.0
HAO CAO CAR HAR 301.6 183.0
HAO CAO CAR HARA 61.9 303.1
OAX CAO HAO HAOA 239.2 239.9
HAO CAO OAX CAP 183.9 298.7
HAOA CAO CAR NBG 300.8 183.2
HAOA CAO CAR HAR 60.8 303.2
HAOA CAO CAR HARA 181.1 63.2
OAX CAO HAOA HAO 120.5 120.1
HAOA CAO OAX CAP 64.7 178.6
CAP OAX CAO HAO 183.9 298.7
CAP OAX CAO HAOA 64.7 178.6
CAS CAP OAX HAP 240.0 240.1
CAS CAP OAX HAPA 118.7 120.0
HAP CAP OAX HAPA 238.7 239.9
CAR NBG CAS CAP 318.9 301.4
OAX CAP CAS HAP 120.0 119.9
OAX CAP CAS HAPA 241.3 240.0
HAP CAP CAS HAPA 121.4 120.2
OAX CAP HAP HAPA 118.7 120.1
CAS CAP HAP HAPA 241.3 239.8
OAX CAP HAPA HAP 240.9 239.9
CAS CAP HAPA HAP 119.2 120.1
CAS NBG CAR HAR 227.8 298.7
CAS NBG CAR HARA 107.6 178.6
NBG CAS CAP HAP 288.1 297.0
NBG CAS CAP HAPA 166.8 176.8
HAS CAS NBG HASA 120.8 120.1
HAS CAS CAP HAP 48.1 56.8
HAS CAS CAP HAPA 286.8 296.7
NBG CAS HAS HASA 240.8 239.8
HASA CAS CAP HAP 169.0 177.0
HASA CAS CAP HAPA 47.6 56.8
NBG CAS HASA HAS 119.4 120.1
CAT NBG CAR HAR 351.3 62.4
CAT NBG CAR HARA 231.0 302.4
CAT NBG CAS HAS 77.5 57.7
CAT NBG CAS HASA 316.7 297.6
HAT CAT CAQ HATA 119.6 120.0
OAY CAQ CAT HAQ 240.0 240.0
OAY CAQ CAT HAQA 122.1 119.9
CAT CAQ OAY CBC 204.1 180.0
HAQ CAQ CAT HAQA 242.2 240.0
CAQ CAT HAT HATA 239.6 240.0
HAT CAT CAQ OAY 321.8 305.4
HAT CAT CAQ HAQ 81.8 65.4
HAT CAT CAQ HAQA 199.7 185.4
CAQ CAT HATA HAT 120.2 120.0
HATA CAT CAQ OAY 202.2 185.3
HATA CAT CAQ HAQ 322.2 305.4
HATA CAT CAQ HAQA 80.0 65.4
OAY CAQ CAT HAT 321.8 305.4
OAY CAQ CAT HATA 202.2 185.3
CAT CAQ OAY HAQ 120.0 120.1
CAT CAQ OAY HAQA 237.8 240.1
HAQ CAQ OAY HAQA 117.9 120.0
CAQ OAY CBC CAK 175.5 180.0
HAQ CAQ CAT HAT 81.8 65.4
HAQ CAQ CAT HATA 322.2 305.4
CAT CAQ HAQ OAY 244.7 240.0
CAT CAQ HAQ HAQA 122.3 120.0
OAY CAQ HAQ HAQA 237.6 240.0
HAQ CAQ OAY CBC 84.1 59.9
HAQA CAQ CAT HAT 199.7 185.4
HAQA CAQ CAT HATA 80.0 65.4
CAT CAQ HAQA OAY 116.9 120.0
CAT CAQ HAQA HAQ 238.5 240.0
OAY CAQ HAQA HAQ 121.6 120.0
HAQA CAQ OAY CBC 326.3 299.9
CBC OAY CAQ HAQ 84.1 59.9
CBC OAY CAQ HAQA 326.3 299.9
OAY CBC CAK CAI 180.2 180.0
OAY CBC CAK HAK 0.2 0.0
CAJ CBC CAK HAK 180.8 180.2
CAI CAK CBC HAK 180.0 180.0
CBC CAK CAI HAI 179.1 180.0
CBC CAK CAI HAK 180.0 180.0
CBB CAI CAK HAI 180.0 180.1
CBC CAK HAK CAI 180.0 180.0
HAK CAK CAI HAI 359.1 360.0
CBB CAI CAK HAK 179.0 180.0
CAK CAI CBB HAI 180.0 179.9
HAI CAI CAK HAK 359.1 360.0
CBB CAH CAJ HAH 180.0 179.9
CAJ CAH CBB NAV 179.6 180.1
HAJ CAJ CAH CBB 179.8 180.0
HAJ CAJ CAH HAH 359.8 0.1
CAH CBB CAI HAI 180.5 179.7
CBB CAH CAJ HAJ 179.8 180.0
CAJ CAH CBB HAH 180.0 180.1
CAH CBB NAV CAZ 71.1 147.2
CAH CBB NAV HNAV 251.1 327.1
HAH CAH CAJ HAJ 359.8 0.1
CAJ CAH HAH CBB 180.0 179.9
HAH CAH CBB NAV 359.6 360.0
NAV CBB CAI HAI 0.9 360.0
NAV CBB CAH HAH 359.6 360.0
CAZ NAV CBB HNAV 180.0 180.1
CBB NAV CAZ NAW 182.0 174.8
CBB NAV CAZ HNAV 180.0 179.9
OAE CAZ NAV NAW 183.1 179.9
NAV CAZ NAW CBE 181.2 179.9
NAV CAZ NAW HNAW 1.2 359.9
CBB NAV HNAV CAZ 180.0 180.1
HNAV NAV CAZ NAW 2.0 354.9
OAE CAZ NAV HNAV 185.1 174.8
NAV CAZ OAE NAW 176.7 180.1
OAE CAZ NAW CBE 358.0 0.0
OAE CAZ NAW HNAW 178.0 180.0
NAW CAZ NAV HNAV 2.0 354.9
CBE NAW CAZ HNAW 180.0 180.0
CAZ NAW CBE CAN 33.7 0.0
CAZ NAW CBE NBH 210.2 179.7
CAZ NAW CBE HNAW 180.0 180.0
CAN CBE NAW NBH 183.5 180.4
NAW CBE CAN CBF 177.7 180.0
NAW CBE CAN HAN 357.7 360.0
NAW CBE NBH NAU 181.9 179.9
NAW CBE NBH CBD 2.4 0.1
CAZ NAW HNAW CBE 180.0 180.0
HNAW NAW CBE CAN 213.7 180.0
HNAW NAW CBE NBH 30.2 359.7
CAN CBE NAW HNAW 213.7 180.0
NAW CBE CAN NBH 176.9 179.7
CAN CBE NBH NAU 359.0 359.6
CAN CBE NBH CBD 179.5 179.7
CBF CAN CBE HAN 180.0 180.0
CBE CAN CBF NAU 359.7 360.0
CBE CAN CBF CBI 179.0 180.0
NBH CBE NAW HNAW 30.2 359.7
NAW CBE NBH CAN 182.9 180.3
NBH CBE CAN CBF 0.8 0.3
NBH CBE CAN HAN 180.8 180.3
CBE NBH CBD CAM 224.4 145.0
CBF CAN CBE NBH 0.8 0.3
CBE CAN CBF HAN 180.0 180.0
CBI CBF CAN NAU 179.4 180.0
CAN CBF CBI CAC 190.1 75.0
CAN CBF CBI CAB 71.6 315.0
HAN CAN CBE NBH 180.8 180.3
CBE CAN HAN CBF 180.0 180.0
HAN CAN CBF NAU 179.7 180.0
HAN CAN CBF CBI 359.0 0.0
CBE NBH NAU CBF 0.8 0.4
NAU CBF CAN HAN 179.7 180.0
CAN CBF NAU CBI 179.4 180.0
NAU CBF CBI CAC 9.4 255.0
NAU CBF CBI CAB 250.9 135.0
CBI CBF CAN HAN 359.0 0.0
CAN CBF CBI NAU 180.7 180.0
CAD CBI CBF CAB 238.1 240.0
CAC CBI CBF CAB 118.6 120.0
CBF CBI CAC HAC 101.1 60.0
CBF CBI CAC HACA 221.2 180.0
CBF CBI CAC HACB 341.2 300.0
CBF CBI CAB HAB 83.1 60.0
CBF CBI CAB HABA 203.1 180.0
CBF CBI CAB HABB 323.1 300.0
CAD CBI CBF NAU 129.0 15.0
CBF CBI CAD CAB 120.4 120.0
CAC CBI CAD CAB 243.0 240.1
CAD CBI CAC HAC 339.9 300.0
CAD CBI CAC HACA 99.9 60.0
CAD CBI CAC HACB 220.0 180.0
CAD CBI CAB HAB 204.4 180.0
CAD CBI CAB HABA 324.4 300.0
CAD CBI CAB HABB 84.4 60.1
CAC CBI CBF NAU 9.4 255.0
CBF CBI CAC CAB 240.7 240.0
CAD CBI CAC CAB 119.5 119.9
CAC CBI CAB HAB 321.4 299.9
CAC CBI CAB HABA 81.4 59.9
CAC CBI CAB HABB 201.4 180.0
HAC CAC CBI HACA 240.0 240.0
HAC CAC CBI HACB 120.0 120.0
HACA CAC CBI HACB 240.0 240.0
CAB CBI CBF NAU 250.9 135.0
CBF CBI CAB CAC 121.7 120.0
CAB CBI CAC HAC 220.4 180.0
CAB CBI CAC HACA 340.4 300.1
CAB CBI CAC HACB 100.5 60.1
HAB CAB CBI HABA 240.0 240.0
HAB CAB CBI HABB 120.0 119.9
HABA CAB CBI HABB 240.0 239.9
HAC CAC CBI CAB 220.4 180.0
CBI CAC HAC HACA 120.0 120.0
CBI CAC HAC HACB 240.0 240.0
HACA CAC HAC HACB 120.0 120.0
HACA CAC CBI CAB 340.4 300.1
CBI CAC HACA HAC 240.0 240.0
CBI CAC HACA HACB 120.0 120.0
HAC CAC HACA HACB 240.0 240.0
HACB CAC CBI CAB 100.5 60.1
CBI CAC HACB HAC 120.0 120.0
CBI CAC HACB HACA 240.0 240.0
HAC CAC HACB HACA 120.0 120.0
HAD CAD CBI CAB 262.3 299.9
HADA CAD HAD HADB 120.0 119.9
HADA CAD CBI CAB 22.2 59.9
HAD CAD HADA HADB 240.0 240.1
HADB CAD CBI CAB 142.3 180.0
HAD CAD HADB HADA 120.0 119.9
CBI CAB HAB HABA 120.0 120.0
CBI CAB HAB HABB 240.0 240.0
HABA CAB HAB HABB 120.0 120.0
CBI CAB HABA HAB 240.0 240.0
CBI CAB HABA HABB 120.0 120.0
HAB CAB HABA HABB 240.0 240.0
CBI CAB HABB HAB 120.0 119.9
CBI CAB HABB HABA 240.0 239.9
HAB CAB HABB HABA 120.0 120.0
CBE NBH NAU CBD 180.5 180.2
CBE NBH CBD NAU 179.5 179.8
CAL CBD NBH CAM 182.1 180.2
NBH CBD CAM CAG 181.2 179.7
NBH CBD CAM HAM 1.2 359.9
NBH CBD CAL CAM 177.9 179.8
CAL CBD CAM CAG 359.1 359.5
CAL CBD CAM HAM 179.2 179.7
CBD CAM CAG HAG 180.3 180.3
CAF CAL CBD CAM 0.5 0.3
CBA CAF CAL HAF 180.0 180.0
CAL CAF CBA CAA 180.1 180.0
CAL CAF CBA CAG 358.9 360.0
HAL CAL CBD CAM 180.5 180.3
HAL CAL CAF CBA 180.5 180.0
HAL CAL CAF HAF 0.5 0.1
CBA CAF CAL HAL 180.5 180.0
CAL CAF CBA HAF 180.0 180.0
CAA CBA CAF CAG 181.3 180.0
CAF CBA CAA HAA 10.5 90.0
CAF CBA CAA HAAA 130.5 210.0
CAF CBA CAA HAAB 250.5 330.1
CAF CBA CAG HAG 180.8 180.0
HAF CAF CAL HAL 0.5 0.1
CAL CAF HAF CBA 180.0 180.0
HAF CAF CBA CAA 0.1 360.0
HAF CAF CBA CAG 178.8 180.0
CAA CBA CAF HAF 0.1 360.0
CAF CBA CAA CAG 178.8 180.0
CAA CBA CAG HAG 359.5 360.0
HAA CAA CBA HAAA 240.0 240.0
HAA CAA CBA HAAB 120.0 119.9
HAAA CAA CBA HAAB 240.0 239.9
CBD CAM CAG CBA 0.3 0.5
CAG CBA CAF HAF 178.8 180.0
CAF CBA CAG CAA 181.3 180.0
CAG CBA CAA HAA 191.8 270.0
CAG CBA CAA HAAA 311.7 30.0
CAG CBA CAA HAAB 71.8 150.1
CAM CAG CBA HAG 180.0 179.8
HAA CAA CBA CAG 191.8 270.0
CBA CAA HAA HAAA 120.0 120.0
CBA CAA HAA HAAB 240.0 240.0
HAAA CAA HAA HAAB 120.1 120.0
HAAA CAA CBA CAG 311.7 30.0
CBA CAA HAAA HAA 240.0 240.0
CBA CAA HAAA HAAB 120.0 120.1
HAA CAA HAAA HAAB 240.0 240.1
HAAB CAA CBA CAG 71.8 150.1
CBA CAA HAAB HAA 120.0 120.0
CBA CAA HAAB HAAA 240.0 239.9
HAA CAA HAAB HAAA 120.0 119.9
CBD CAM CAG HAM 180.0 180.3
CBA CAG CAM HAG 180.0 180.2
CBD CAM HAM CAG 180.0 179.7
HAM CAM CAG HAG 0.2 0.1