PDB Chemical Component R24
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for R24
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
C2 |
1.413 |
1.393 |
| C2 |
C3 |
1.399 |
1.361 |
| C4 |
C1 |
1.401 |
1.363 |
| C4 |
C5 |
1.405 |
1.402 |
| C5 |
C6 |
1.414 |
1.415 |
| C6 |
C3 |
1.405 |
1.406 |
| C6 |
N7 |
1.353 |
1.338 |
| C8 |
C5 |
1.407 |
1.415 |
| C8 |
C10 |
1.393 |
1.386 |
| C10 |
C11 |
1.409 |
1.388 |
| C11 |
N7 |
1.326 |
1.313 |
| C12 |
N9 |
1.364 |
1.396 |
| C12 |
C17 |
1.396 |
1.390 |
| C13 |
C12 |
1.418 |
1.388 |
| C14 |
C13 |
1.415 |
1.387 |
| C14 |
C15 |
1.380 |
1.389 |
| C15 |
C16 |
1.406 |
1.382 |
| N38 |
C1 |
1.346 |
1.479 |
| N38 |
O40 |
1.360 |
1.218 |
| O39 |
N38 |
1.360 |
1.218 |
| N9 |
C8 |
1.368 |
1.387 |
| C16 |
C17 |
1.395 |
1.381 |
| N18 |
C14 |
1.364 |
1.400 |
| N18 |
C19 |
1.348 |
1.348 |
| C19 |
O20 |
1.228 |
1.216 |
| N21 |
C19 |
1.326 |
1.348 |
| C22 |
N21 |
1.348 |
1.394 |
| C22 |
C26 |
1.337 |
1.361 |
| C25 |
C26 |
1.351 |
1.398 |
| C25 |
C27 |
1.545 |
1.507 |
| C27 |
C29 |
1.550 |
1.530 |
| C27 |
C30 |
1.538 |
1.530 |
| C28 |
C27 |
1.552 |
1.531 |
| N24 |
C25 |
1.323 |
1.308 |
| N23 |
C22 |
1.357 |
1.361 |
| N23 |
N24 |
1.246 |
1.401 |
| C31 |
N23 |
1.351 |
1.401 |
| C32 |
C31 |
1.409 |
1.388 |
| C33 |
C32 |
1.414 |
1.381 |
| C34 |
C33 |
1.407 |
1.383 |
| C34 |
C35 |
1.396 |
1.382 |
| C37 |
C34 |
1.574 |
1.507 |
| C35 |
C36 |
1.405 |
1.381 |
| C36 |
C31 |
1.404 |
1.389 |
| C2 |
H2 |
1.080 |
1.080 |
| C3 |
H3 |
1.080 |
1.080 |
| C4 |
H4 |
1.080 |
1.080 |
| C10 |
H10 |
1.080 |
1.080 |
| C11 |
H11 |
1.080 |
1.080 |
| C13 |
H13 |
1.080 |
1.080 |
| C15 |
H15 |
1.080 |
1.080 |
| N9 |
HN9 |
1.000 |
0.971 |
| C17 |
H17 |
1.080 |
1.080 |
| C16 |
H16 |
1.080 |
1.080 |
| N18 |
HN18 |
1.000 |
0.970 |
| N21 |
HN21 |
1.001 |
0.969 |
| C26 |
H26 |
1.080 |
1.080 |
| C29 |
H29 |
1.100 |
1.090 |
| C29 |
H29A |
1.100 |
1.090 |
| C29 |
H29B |
1.100 |
1.090 |
| C30 |
H30 |
1.100 |
1.090 |
| C30 |
H30A |
1.100 |
1.090 |
| C30 |
H30B |
1.100 |
1.089 |
| C28 |
H28 |
1.100 |
1.090 |
| C28 |
H28A |
1.100 |
1.090 |
| C28 |
H28B |
1.100 |
1.090 |
| C32 |
H32 |
1.080 |
1.081 |
| C33 |
H33 |
1.080 |
1.080 |
| C37 |
H37 |
1.100 |
1.090 |
| C37 |
H37A |
1.100 |
1.089 |
| C37 |
H37B |
1.100 |
1.090 |
| C35 |
H35 |
1.080 |
1.080 |
| C36 |
H36 |
1.080 |
1.080 |
Bond Angles for R24
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C1 |
C2 |
C3 |
120.2 |
121.0 |
| C1 |
C2 |
H2 |
119.9 |
119.4 |
| C3 |
C2 |
H2 |
119.9 |
119.5 |
| C2 |
C3 |
H3 |
120.1 |
120.1 |
| C4 |
C5 |
C6 |
120.0 |
119.7 |
| C5 |
C4 |
H4 |
120.1 |
120.2 |
| C5 |
C6 |
N7 |
121.5 |
120.0 |
| C6 |
C3 |
H3 |
120.0 |
120.2 |
| C6 |
N7 |
C11 |
120.0 |
121.7 |
| C8 |
C10 |
C11 |
121.7 |
119.7 |
| C8 |
C10 |
H10 |
119.1 |
120.2 |
| C10 |
C11 |
N7 |
120.8 |
121.8 |
| C11 |
C10 |
H10 |
119.2 |
120.1 |
| C10 |
C11 |
H11 |
119.6 |
119.1 |
| N7 |
C11 |
H11 |
119.6 |
119.1 |
| N9 |
C12 |
C17 |
119.6 |
120.1 |
| C13 |
C12 |
N9 |
121.3 |
120.1 |
| C12 |
N9 |
HN9 |
117.8 |
120.0 |
| C13 |
C12 |
C17 |
119.0 |
119.9 |
| C12 |
C17 |
H17 |
120.4 |
120.0 |
| C14 |
C13 |
H13 |
119.2 |
120.1 |
| C14 |
C15 |
C16 |
121.0 |
120.1 |
| C14 |
C15 |
H15 |
119.5 |
120.0 |
| C15 |
C16 |
C17 |
121.1 |
120.1 |
| C16 |
C15 |
H15 |
119.5 |
119.9 |
| C15 |
C16 |
H16 |
119.5 |
119.9 |
| C16 |
C17 |
H17 |
120.3 |
119.9 |
| N18 |
C19 |
O20 |
123.6 |
120.0 |
| C19 |
N18 |
HN18 |
116.7 |
120.0 |
| C22 |
N21 |
HN21 |
115.1 |
120.0 |
| C22 |
C26 |
H26 |
127.7 |
126.0 |
| C25 |
C26 |
H26 |
127.6 |
126.1 |
| C25 |
C27 |
C29 |
105.3 |
109.5 |
| C25 |
C27 |
C30 |
114.6 |
109.5 |
| C29 |
C27 |
C30 |
108.2 |
109.5 |
| C27 |
C29 |
H29 |
109.5 |
109.5 |
| C27 |
C29 |
H29A |
109.5 |
109.5 |
| C27 |
C29 |
H29B |
109.4 |
109.5 |
| C27 |
C30 |
H30 |
109.5 |
109.4 |
| C27 |
C30 |
H30A |
109.5 |
109.5 |
| C27 |
C30 |
H30B |
109.4 |
109.4 |
| C33 |
C32 |
H32 |
120.2 |
120.1 |
| C34 |
C33 |
H33 |
119.4 |
120.0 |
| C37 |
C34 |
C35 |
119.6 |
120.0 |
| C34 |
C35 |
C36 |
120.5 |
120.1 |
| C34 |
C35 |
H35 |
119.7 |
120.0 |
| C36 |
C35 |
H35 |
119.8 |
120.0 |
| C35 |
C36 |
H36 |
119.3 |
120.1 |
| H29 |
C29 |
H29A |
109.5 |
109.4 |
| H29 |
C29 |
H29B |
109.5 |
109.5 |
| H29A |
C29 |
H29B |
109.5 |
109.4 |
| H30 |
C30 |
H30A |
109.5 |
109.5 |
| H30 |
C30 |
H30B |
109.5 |
109.5 |
| H30A |
C30 |
H30B |
109.5 |
109.5 |
| H28 |
C28 |
H28A |
109.5 |
109.5 |
| H28 |
C28 |
H28B |
109.5 |
109.5 |
| H28A |
C28 |
H28B |
109.5 |
109.5 |
| H37 |
C37 |
H37A |
109.4 |
109.5 |
| H37 |
C37 |
H37B |
109.4 |
109.5 |
| H37A |
C37 |
H37B |
109.5 |
109.5 |
Torsion Angles for R24
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C3 |
C2 |
C1 |
H2 |
180.0 |
180.0 |
| C1 |
C2 |
C3 |
H3 |
179.3 |
180.0 |
| C1 |
C2 |
C3 |
H2 |
180.0 |
180.0 |
| C6 |
C3 |
C2 |
H3 |
180.0 |
180.0 |
| C4 |
C1 |
C2 |
H2 |
180.6 |
180.0 |
| C4 |
C5 |
C6 |
N7 |
180.7 |
180.0 |
| C6 |
C5 |
C4 |
H4 |
179.5 |
180.0 |
| C5 |
C6 |
C3 |
H3 |
180.2 |
180.0 |
| C5 |
C6 |
N7 |
C11 |
359.0 |
359.9 |
| C6 |
C3 |
C2 |
H2 |
179.4 |
180.0 |
| C2 |
C3 |
C6 |
H3 |
180.0 |
180.0 |
| N7 |
C6 |
C3 |
H3 |
359.9 |
359.9 |
| C10 |
C11 |
N7 |
C6 |
1.2 |
0.1 |
| C6 |
N7 |
C11 |
H11 |
181.2 |
180.0 |
| C8 |
C5 |
C4 |
H4 |
359.6 |
360.0 |
| C8 |
C5 |
C6 |
N7 |
0.6 |
0.1 |
| C8 |
C10 |
C11 |
N7 |
359.0 |
360.0 |
| C11 |
C10 |
C8 |
H10 |
180.0 |
180.0 |
| C8 |
C10 |
C11 |
H11 |
179.0 |
180.0 |
| C6 |
N7 |
C11 |
C10 |
1.2 |
0.1 |
| C8 |
C10 |
C11 |
H10 |
180.0 |
180.0 |
| N7 |
C11 |
C10 |
H11 |
180.0 |
180.0 |
| N7 |
C11 |
C10 |
H10 |
179.0 |
180.0 |
| C10 |
C11 |
N7 |
H11 |
180.0 |
180.0 |
| C13 |
C12 |
N9 |
C17 |
182.3 |
179.8 |
| N9 |
C12 |
C17 |
H17 |
0.3 |
0.1 |
| C13 |
C12 |
C17 |
N9 |
177.8 |
180.2 |
| C17 |
C12 |
N9 |
HN9 |
231.1 |
318.6 |
| C15 |
C16 |
C17 |
C12 |
2.0 |
359.6 |
| C16 |
C17 |
C12 |
H17 |
180.0 |
180.2 |
| N9 |
C12 |
C13 |
C17 |
177.7 |
180.2 |
| C13 |
C12 |
N9 |
HN9 |
53.4 |
138.4 |
| C13 |
C12 |
C17 |
H17 |
178.1 |
180.3 |
| C14 |
C13 |
C12 |
N9 |
179.2 |
180.0 |
| C14 |
C13 |
C12 |
C17 |
1.5 |
359.7 |
| C15 |
C14 |
C13 |
H13 |
178.9 |
180.0 |
| C14 |
C15 |
C16 |
C17 |
358.4 |
0.2 |
| C16 |
C15 |
C14 |
H15 |
180.0 |
180.1 |
| C14 |
C15 |
C16 |
H16 |
178.4 |
180.0 |
| C14 |
C15 |
C16 |
H15 |
180.0 |
179.9 |
| C15 |
C16 |
C17 |
H17 |
182.0 |
179.8 |
| N38 |
C1 |
C2 |
H2 |
359.8 |
359.7 |
| N9 |
C8 |
C10 |
H10 |
1.1 |
0.0 |
| C12 |
C17 |
C16 |
H17 |
180.0 |
179.8 |
| C17 |
C16 |
C15 |
H15 |
178.4 |
180.2 |
| C15 |
C16 |
C17 |
H16 |
180.0 |
179.8 |
| N18 |
C14 |
C13 |
H13 |
358.6 |
360.0 |
| N18 |
C14 |
C15 |
H15 |
1.4 |
360.0 |
| O20 |
C19 |
N18 |
HN18 |
178.9 |
174.1 |
| N21 |
C19 |
N18 |
HN18 |
1.4 |
354.2 |
| C26 |
C22 |
N21 |
HN21 |
203.1 |
180.0 |
| C25 |
C26 |
C22 |
H26 |
180.0 |
180.0 |
| C22 |
C26 |
C25 |
H26 |
180.0 |
180.0 |
| C27 |
C25 |
C26 |
H26 |
1.6 |
0.0 |
| C29 |
C27 |
C25 |
C30 |
118.8 |
240.0 |
| C25 |
C27 |
C29 |
H29 |
257.1 |
60.0 |
| C25 |
C27 |
C29 |
H29A |
17.1 |
180.0 |
| C25 |
C27 |
C29 |
H29B |
137.1 |
300.0 |
| C25 |
C27 |
C30 |
H30 |
303.5 |
60.0 |
| C25 |
C27 |
C30 |
H30A |
63.5 |
180.0 |
| C25 |
C27 |
C30 |
H30B |
183.5 |
300.0 |
| C25 |
C27 |
C29 |
C30 |
237.0 |
120.0 |
| C29 |
C27 |
C30 |
H30 |
186.4 |
180.0 |
| C29 |
C27 |
C30 |
H30A |
306.4 |
300.0 |
| C29 |
C27 |
C30 |
H30B |
66.4 |
60.0 |
| H29 |
C29 |
C27 |
H29A |
240.0 |
240.0 |
| H29 |
C29 |
C27 |
H29B |
120.0 |
120.0 |
| H29A |
C29 |
C27 |
H29B |
240.0 |
240.0 |
| C25 |
C27 |
C30 |
C29 |
117.1 |
240.0 |
| C30 |
C27 |
C29 |
H29 |
20.1 |
300.0 |
| C30 |
C27 |
C29 |
H29A |
140.2 |
60.0 |
| C30 |
C27 |
C29 |
H29B |
260.1 |
180.0 |
| H30 |
C30 |
C27 |
H30A |
240.0 |
240.0 |
| H30 |
C30 |
C27 |
H30B |
120.0 |
120.0 |
| H30A |
C30 |
C27 |
H30B |
240.0 |
239.9 |
| C28 |
C27 |
C29 |
H29 |
141.5 |
180.0 |
| C28 |
C27 |
C29 |
H29A |
261.5 |
300.0 |
| C28 |
C27 |
C29 |
H29B |
21.5 |
60.0 |
| C28 |
C27 |
C30 |
H30 |
68.2 |
300.0 |
| C28 |
C27 |
C30 |
H30A |
188.2 |
59.9 |
| C28 |
C27 |
C30 |
H30B |
308.2 |
180.0 |
| N24 |
C25 |
C26 |
H26 |
177.7 |
180.0 |
| N23 |
C22 |
N21 |
HN21 |
13.6 |
359.7 |
| N23 |
C22 |
C26 |
H26 |
183.3 |
180.3 |
| C34 |
C33 |
C32 |
H32 |
179.1 |
180.1 |
| C35 |
C34 |
C33 |
H33 |
178.7 |
180.0 |
| C36 |
C35 |
C34 |
H35 |
180.0 |
179.8 |
| C34 |
C35 |
C36 |
H36 |
179.8 |
180.0 |
| C37 |
C34 |
C33 |
H33 |
0.6 |
0.0 |
| C37 |
C34 |
C35 |
C36 |
180.0 |
179.8 |
| C37 |
C34 |
C35 |
H35 |
0.0 |
0.0 |
| C34 |
C35 |
C36 |
H35 |
180.0 |
180.2 |
| C1 |
C2 |
H2 |
C3 |
180.0 |
180.0 |
| H2 |
C2 |
C3 |
H3 |
359.3 |
0.0 |
| H3 |
C3 |
C2 |
H2 |
359.3 |
0.0 |
| H4 |
C4 |
C5 |
C6 |
179.5 |
180.0 |
| C8 |
C10 |
H10 |
C11 |
180.0 |
180.0 |
| H10 |
C10 |
C11 |
N7 |
179.0 |
180.0 |
| H10 |
C10 |
C11 |
H11 |
359.0 |
0.0 |
| C10 |
C11 |
H11 |
N7 |
180.0 |
180.0 |
| H11 |
C11 |
C10 |
H10 |
359.0 |
0.0 |
| H13 |
C13 |
C12 |
N9 |
359.2 |
360.0 |
| H13 |
C13 |
C12 |
C17 |
181.5 |
179.7 |
| C14 |
C15 |
H15 |
C16 |
180.0 |
180.1 |
| H15 |
C15 |
C16 |
C17 |
178.4 |
180.2 |
| H15 |
C15 |
C16 |
H16 |
358.4 |
0.1 |
| HN9 |
N9 |
C12 |
C17 |
231.1 |
318.6 |
| C15 |
C16 |
H16 |
C17 |
180.0 |
180.2 |
| H16 |
C16 |
C15 |
H15 |
358.4 |
0.1 |
| H16 |
C16 |
C17 |
H17 |
2.0 |
359.9 |
| HN18 |
N18 |
C19 |
O20 |
178.9 |
174.1 |
| H29 |
C29 |
C27 |
C30 |
20.1 |
300.0 |
| C27 |
C29 |
H29 |
H29A |
120.0 |
120.0 |
| C27 |
C29 |
H29 |
H29B |
240.0 |
239.9 |
| H29A |
C29 |
H29 |
H29B |
120.0 |
119.9 |
| H29A |
C29 |
C27 |
C30 |
140.2 |
60.0 |
| C27 |
C29 |
H29A |
H29 |
240.0 |
240.0 |
| C27 |
C29 |
H29A |
H29B |
120.0 |
120.1 |
| H29 |
C29 |
H29A |
H29B |
240.0 |
240.1 |
| H29B |
C29 |
C27 |
C30 |
260.1 |
180.0 |
| C27 |
C29 |
H29B |
H29 |
120.0 |
120.0 |
| C27 |
C29 |
H29B |
H29A |
240.0 |
239.9 |
| H29 |
C29 |
H29B |
H29A |
120.0 |
119.9 |
| C27 |
C30 |
H30 |
H30A |
120.0 |
120.0 |
| C27 |
C30 |
H30 |
H30B |
240.0 |
240.1 |
| H30A |
C30 |
H30 |
H30B |
120.0 |
120.1 |
| C27 |
C30 |
H30A |
H30 |
240.0 |
240.1 |
| C27 |
C30 |
H30A |
H30B |
120.0 |
120.0 |
| H30 |
C30 |
H30A |
H30B |
240.0 |
239.9 |
| C27 |
C30 |
H30B |
H30 |
120.0 |
119.9 |
| C27 |
C30 |
H30B |
H30A |
240.0 |
240.0 |
| H30 |
C30 |
H30B |
H30A |
120.0 |
120.1 |
| H28A |
C28 |
H28 |
H28B |
120.0 |
120.1 |
| H28 |
C28 |
H28A |
H28B |
240.0 |
239.9 |
| H28 |
C28 |
H28B |
H28A |
120.0 |
120.1 |
| H33 |
C33 |
C32 |
H32 |
359.1 |
0.0 |
| H37 |
C37 |
C34 |
C35 |
279.0 |
270.0 |
| H37A |
C37 |
H37 |
H37B |
119.9 |
120.1 |
| H37A |
C37 |
C34 |
C35 |
39.0 |
30.0 |
| H37 |
C37 |
H37A |
H37B |
240.1 |
239.9 |
| H37B |
C37 |
C34 |
C35 |
159.0 |
150.0 |
| H37 |
C37 |
H37B |
H37A |
119.9 |
120.1 |
| C34 |
C35 |
H35 |
C36 |
180.0 |
179.8 |
| H35 |
C35 |
C36 |
H36 |
359.8 |
359.8 |
| H36 |
C36 |
C35 |
H35 |
359.8 |
359.8 |