PDB Chemical Component R

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for R

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P OP1 1.481 1.480
P OP2 1.479 1.610
P OP3 1.608 1.610
P O5' 1.607 1.610
OP2 HOP2 0.950 0.967
OP3 HOP3 0.950 0.967
O5' C5' 1.431 1.428
C5' C4' 1.523 1.531
C5' H5' 1.091 1.089
C5' H5'' 1.091 1.089
C4' O4' 1.446 1.445
C4' C3' 1.518 1.550
C4' H4' 1.089 1.089
O4' C1' 1.439 1.437
C3' O3' 1.434 1.429
C3' C2' 1.518 1.548
C3' H3' 1.095 1.090
O3' HO3' 0.949 0.967
C2' C1' 1.518 1.541
C2' H2' 1.091 1.090
C2' H2'' 1.090 1.090
C1' N9 1.480 1.465
C1' H1' 1.091 1.090
N9 C8 1.354 1.361
N9 C4 1.380 1.372
C8 N7 1.290 1.300
C8 H8 1.089 1.081
N7 C5 1.400 1.354
C5 C6 1.408 1.405
C5 C4 1.377 1.405
C6 N6 1.369 1.384
C6 N1 1.370 1.329
N6 CA 1.500 1.465
N6 H6 1.009 0.970
N1 C2 1.332 1.320
C2 N3 1.325 1.316
C2 H2 1.090 1.080
N3 C4 1.350 1.329
CA CB 1.528 1.530
CA CJ 1.512 1.506
CA HA 1.077 1.090
CB OB 1.417 1.429
CB HB1 1.082 1.090
CB HB2 1.076 1.090
OB HB 0.964 0.967
CJ CO 1.401 1.382
CJ CO' 1.397 1.382
CO CM 1.401 1.383
CO HO 1.081 1.079
CO' CM' 1.399 1.382
CO' HO' 1.080 1.080
CM CP 1.399 1.382
CM HM 1.081 1.080
CM' CP 1.398 1.382
CM' HM' 1.080 1.080
CP HP 1.080 1.080

Bond Angles for R

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
OP1 P OP2 119.8 109.5
OP1 P OP3 108.4 109.5
OP1 P O5' 108.4 109.5
OP2 P OP3 108.4 109.5
OP2 P O5' 108.3 109.5
P OP2 HOP2 119.8 106.8
OP3 P O5' 102.2 109.4
P OP3 HOP3 108.4 106.9
P O5' C5' 120.4 106.8
O5' C5' C4' 111.3 109.5
O5' C5' H5' 109.4 109.4
O5' C5' H5'' 108.9 109.6
C4' C5' H5' 109.3 109.5
C4' C5' H5'' 108.8 109.4
C5' C4' O4' 112.2 110.8
C5' C4' C3' 110.3 110.6
C5' C4' H4' 108.9 110.6
H5' C5' H5'' 109.0 109.5
O4' C4' C3' 107.3 103.5
O4' C4' H4' 109.0 110.6
C4' O4' C1' 108.1 106.9
C3' C4' H4' 109.0 110.6
C4' C3' O3' 110.2 110.9
C4' C3' C2' 105.2 102.1
C4' C3' H3' 109.4 110.9
O4' C1' C2' 106.2 107.4
O4' C1' N9 111.8 109.9
O4' C1' H1' 109.0 109.9
O3' C3' C2' 112.7 110.9
O3' C3' H3' 110.1 110.8
C3' O3' HO3' 110.2 106.8
C2' C3' H3' 109.1 110.9
C3' C2' C1' 105.9 104.2
C3' C2' H2' 109.7 110.5
C3' C2' H2'' 110.7 110.5
C1' C2' H2' 110.0 110.5
C1' C2' H2'' 110.4 110.5
C2' C1' N9 111.9 109.9
C2' C1' H1' 108.6 109.9
H2' C2' H2'' 110.0 110.6
N9 C1' H1' 109.2 109.9
C1' N9 C8 130.3 126.3
C1' N9 C4 126.2 126.3
C8 N9 C4 103.5 107.4
N9 C8 N7 117.4 110.0
N9 C8 H8 121.2 124.9
N9 C4 C5 106.7 106.0
N9 C4 N3 126.0 134.9
N7 C8 H8 121.3 125.0
C8 N7 C5 102.0 109.5
N7 C5 C6 132.9 134.7
N7 C5 C4 110.4 107.1
C6 C5 C4 116.7 118.2
C5 C6 N6 123.6 120.8
C5 C6 N1 116.5 118.5
C5 C4 N3 127.3 119.1
N6 C6 N1 119.9 120.7
C6 N6 CA 121.1 120.1
C6 N6 H6 119.5 120.0
C6 N1 C2 120.5 121.2
CA N6 H6 119.4 120.0
N6 CA CB 110.2 109.5
N6 CA CJ 109.3 109.5
N6 CA HA 109.6 109.4
N1 C2 N3 127.3 122.5
N1 C2 H2 116.3 118.7
N3 C2 H2 116.3 118.8
C2 N3 C4 111.6 120.7
CB CA CJ 109.4 109.5
CB CA HA 109.2 109.4
CA CB OB 109.5 109.5
CA CB HB1 109.3 109.5
CA CB HB2 109.5 109.5
CJ CA HA 109.2 109.5
CA CJ CO 120.5 120.0
CA CJ CO' 119.6 120.0
OB CB HB1 110.2 109.4
OB CB HB2 109.0 109.4
CB OB HB 107.8 106.8
HB1 CB HB2 109.3 109.5
CO CJ CO' 119.9 120.0
CJ CO CM 119.9 120.0
CJ CO HO 120.0 120.0
CJ CO' CM' 120.1 120.0
CJ CO' HO' 119.9 120.0
CM CO HO 120.0 119.9
CO CM CP 120.0 120.0
CO CM HM 120.0 120.0
CM' CO' HO' 120.0 120.0
CO' CM' CP 120.0 120.0
CO' CM' HM' 120.0 120.0
CP CM HM 120.0 120.0
CM CP CM' 120.0 120.0
CM CP HP 120.0 120.0
CP CM' HM' 120.0 119.9
CM' CP HP 120.0 120.0

Torsion Angles for R

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP2 P OP1 OP3 125.0 120.0
OP2 P OP1 O5' 235.2 240.0
OP1 P OP2 HOP2 180.0 299.9
OP3 P OP1 O5' 110.1 120.0
OP1 P OP3 HOP3 180.0 180.0
OP1 P O5' C5' 41.8 60.0
OP1 P OP2 OP3 235.0 239.9
OP1 P OP2 O5' 124.9 120.0
OP3 P OP2 O5' 249.9 240.0
OP2 P OP3 HOP3 48.5 60.0
OP2 P O5' C5' 173.2 180.0
OP1 P OP3 OP2 131.5 120.0
OP1 P OP3 O5' 245.7 240.0
OP2 P OP3 O5' 114.2 120.0
OP3 P OP2 HOP2 305.0 60.0
OP3 P O5' C5' 287.5 299.9
OP1 P O5' OP2 228.6 240.0
OP1 P O5' OP3 114.3 120.1
OP2 P O5' OP3 245.7 240.0
O5' P OP2 HOP2 55.2 179.9
O5' P OP3 HOP3 294.3 300.0
P O5' C5' C4' 184.0 180.0
P O5' C5' H5' 63.1 60.0
P O5' C5' H5'' 304.0 300.0
HOP2 OP2 P OP3 305.0 60.0
HOP2 OP2 P O5' 55.2 179.9
HOP3 OP3 P O5' 294.3 300.0
C4' C5' O5' H5' 120.9 120.0
C4' C5' O5' H5'' 240.0 240.0
O5' C5' C4' O4' 292.2 65.8
O5' C5' C4' C3' 51.8 180.0
O5' C5' C4' H4' 171.4 302.9
H5' C5' O5' H5'' 119.1 120.0
O5' C5' C4' H5' 239.0 240.1
O5' C5' C4' H5'' 120.0 120.1
H5' C5' C4' H5'' 241.0 240.0
O4' C4' C5' C3' 240.4 245.8
O4' C4' C5' H4' 120.8 122.9
C5' C4' O4' C1' 146.2 158.5
C3' C4' C5' H4' 240.4 237.1
C5' C4' C3' O3' 104.2 86.1
C5' C4' C3' C2' 225.9 204.3
C5' C4' C3' H3' 343.1 322.6
O5' C5' H5' C4' 122.1 120.0
O5' C5' H5' H5'' 241.0 239.9
C4' C5' H5' H5'' 118.9 119.9
H5' C5' C4' O4' 53.2 185.8
H5' C5' C4' C3' 172.8 300.0
H5' C5' C4' H4' 292.4 62.8
O5' C5' H5'' C4' 238.5 240.0
O5' C5' H5'' H5' 119.3 120.0
C4' C5' H5'' H5' 240.8 240.0
H5'' C5' C4' O4' 172.2 305.8
H5'' C5' C4' C3' 291.8 59.9
H5'' C5' C4' H4' 51.4 182.8
O4' C4' C5' H5' 53.2 185.8
O4' C4' C5' H5'' 172.2 305.8
C5' C4' O4' C3' 121.3 118.6
C5' C4' O4' H4' 239.2 237.1
C3' C4' O4' H4' 117.9 118.5
O4' C4' C3' O3' 226.7 204.8
O4' C4' C3' C2' 348.5 323.0
O4' C4' C3' H3' 105.6 81.2
C4' O4' C1' C2' 332.0 333.6
C4' O4' C1' N9 209.6 214.1
C4' O4' C1' H1' 88.9 93.1
C3' C4' C5' H5' 172.8 300.0
C3' C4' C5' H5'' 291.8 59.9
C5' C4' C3' O4' 237.5 241.3
C5' C4' C3' H4' 119.6 122.9
O4' C4' C3' H4' 242.1 241.5
C3' C4' O4' C1' 24.9 39.9
O3' C3' C4' C2' 238.3 241.8
O3' C3' C4' H3' 121.2 123.6
C4' C3' O3' HO3' 180.0 174.2
C2' C3' C4' H3' 242.9 241.8
C4' C3' C2' C1' 354.9 20.9
C4' C3' C2' H2' 113.6 262.2
C4' C3' C2' H2'' 235.3 139.6
H4' C4' C5' H5' 292.4 62.8
H4' C4' C5' H5'' 51.4 182.8
C5' C4' H4' O4' 122.8 123.0
C5' C4' H4' C3' 239.6 237.1
O4' C4' H4' C3' 116.8 114.1
H4' C4' O4' C1' 267.0 281.4
H4' C4' C3' O3' 344.7 323.3
H4' C4' C3' C2' 106.4 81.5
H4' C4' C3' H3' 223.5 199.7
C1' O4' C4' C3' 24.9 39.9
C1' O4' C4' H4' 267.0 281.4
C3' C2' C1' O4' 20.0 1.9
O4' C1' C2' H2' 261.5 120.6
O4' C1' C2' H2'' 139.9 243.3
C2' C1' O4' N9 122.4 119.5
C2' C1' O4' H1' 243.1 240.5
N9 C1' O4' H1' 120.8 121.0
O4' C1' N9 C8 49.9 28.3
O4' C1' N9 C4 231.2 208.2
O3' C3' C4' H4' 344.7 323.3
C4' C3' O3' C2' 117.2 112.7
C4' C3' O3' H3' 239.2 236.4
C2' C3' O3' H3' 122.0 123.6
O3' C3' C2' C1' 115.1 139.1
O3' C3' C2' H2' 233.7 20.4
O3' C3' C2' H2'' 355.4 257.8
C2' C3' C4' H4' 106.4 81.5
C4' C3' C2' O3' 239.9 241.8
C4' C3' C2' H3' 117.3 118.2
O4' C1' C2' C3' 20.0 1.9
O3' C3' C2' H3' 237.4 236.4
C2' C3' O3' HO3' 62.8 61.4
C1' C2' C3' H2' 241.3 118.7
C1' C2' C3' H2'' 119.7 241.4
C3' C2' C1' N9 142.3 121.4
C3' C2' C1' H1' 262.9 242.5
H2' C2' C3' H2'' 238.3 122.7
H3' C3' C4' H4' 223.5 199.7
C4' C3' H3' O3' 121.3 123.6
C4' C3' H3' C2' 245.4 247.3
O3' C3' H3' C2' 124.1 123.6
H3' C3' O3' HO3' 300.8 297.8
H3' C3' C2' C1' 237.6 262.7
H3' C3' C2' H2' 356.3 144.0
H3' C3' C2' H2'' 117.9 21.3
HO3' O3' C3' C2' 62.8 61.4
HO3' O3' C3' H3' 300.8 297.8
O4' C1' C2' N9 237.7 240.5
O4' C1' C2' H1' 117.1 119.5
C1' C2' C3' H3' 237.6 262.7
C3' C2' C1' H2' 118.5 241.3
C3' C2' C1' H2'' 240.1 118.6
H2' C2' C1' H2'' 121.6 237.3
N9 C1' C2' H1' 239.4 239.0
C2' C1' N9 C8 290.8 270.3
C2' C1' N9 C4 112.2 90.2
H2' C2' C3' H3' 356.3 144.0
C3' C2' H2' C1' 243.9 114.7
C3' C2' H2' H2'' 122.1 237.4
C1' C2' H2' H2'' 238.1 122.6
H2' C2' C1' N9 23.8 240.1
H2' C2' C1' H1' 144.4 1.1
H2'' C2' C3' H3' 117.9 21.3
C3' C2' H2'' C1' 116.9 245.3
C3' C2' H2'' H2' 238.5 122.6
C1' C2' H2'' H2' 121.6 237.3
H2'' C2' C1' N9 262.2 2.8
H2'' C2' C1' H1' 22.8 123.8
O4' C1' N9 C2' 119.0 118.0
O4' C1' N9 H1' 239.3 239.0
N9 C1' C2' H2' 23.8 240.1
N9 C1' C2' H2'' 262.2 2.8
C2' C1' N9 H1' 120.3 121.0
C8 N9 C1' C4 178.7 180.1
C1' N9 C8 N7 181.3 180.0
C1' N9 C8 H8 1.6 359.9
C1' N9 C4 C5 178.8 180.3
C1' N9 C4 N3 358.6 0.1
O4' C1' H1' C2' 244.7 242.0
O4' C1' H1' N9 122.4 121.0
H1' C1' C2' H2' 144.4 1.1
H1' C1' C2' H2'' 22.8 123.8
C2' C1' H1' N9 237.7 239.0
H1' C1' N9 C8 170.5 149.3
H1' C1' N9 C4 351.9 329.2
C8 N9 C1' H1' 170.5 149.3
C1' N9 C8 C4 181.1 179.9
C8 N9 C4 C5 359.8 0.2
C8 N9 C4 N3 179.7 180.0
N7 C8 N9 H8 179.6 180.1
N9 C8 N7 C5 359.9 359.7
C4 N9 C1' H1' 351.9 329.2
C1' N9 C4 C8 178.9 180.1
C4 N9 C8 N7 0.1 0.0
C4 N9 C8 H8 180.5 180.0
N7 C5 C4 N9 0.1 359.6
C6 C5 C4 N9 180.1 180.4
C5 C4 N9 N3 180.2 180.2
C2 N3 C4 N9 180.0 179.9
N7 C8 N9 C4 0.1 0.0
N9 C8 N7 H8 180.4 179.9
C8 N7 C5 C6 180.1 179.5
C8 N7 C5 C4 359.9 0.4
H8 C8 N9 C4 180.5 180.0
N9 C8 H8 N7 179.6 180.1
H8 C8 N7 C5 179.6 179.8
N9 C4 C5 N7 0.1 359.6
C5 N7 C8 H8 179.6 179.8
C6 C5 N7 C4 180.1 179.1
N7 C5 C6 N6 358.5 0.7
N7 C5 C6 N1 179.7 180.5
N7 C5 C4 N3 180.3 179.8
N9 C4 C5 C6 180.1 180.4
N7 C5 C6 C4 179.9 181.0
C6 C5 C4 N3 0.2 0.5
N6 C6 C5 N1 178.8 180.2
C5 C6 N6 CA 358.4 179.8
C5 C6 N6 H6 179.7 359.7
C5 C6 N1 C2 0.2 0.3
N9 C4 C5 N3 179.8 179.9
N7 C5 C4 C6 180.1 179.3
C4 C5 C6 N6 178.6 179.7
C4 C5 C6 N1 359.8 359.5
C2 N3 C4 C5 359.8 359.8
N6 C6 C5 C4 178.6 179.7
C5 C6 N6 N1 181.2 179.8
N6 C6 N1 C2 181.3 180.0
CA N6 C6 H6 178.8 180.1
C6 N6 CA CB 120.7 90.0
C6 N6 CA CJ 240.9 210.0
C6 N6 CA HA 0.5 330.0
N1 C6 C5 C4 359.8 359.5
C5 C6 N1 N6 178.9 180.2
N1 C6 N6 CA 177.2 0.0
N1 C6 N6 H6 358.5 179.9
C6 N1 C2 N3 359.8 360.0
C6 N1 C2 H2 179.9 180.0
CA N6 C6 N1 177.2 0.0
C6 N6 CA H6 181.2 179.9
CB CA N6 CJ 239.8 240.0
CB CA N6 HA 120.2 120.0
N6 CA CB OB 26.5 60.0
N6 CA CB HB1 265.7 300.1
N6 CA CB HB2 146.0 180.0
CJ CA N6 HA 240.4 240.0
N6 CA CJ CO 304.6 150.0
N6 CA CJ CO' 125.0 329.7
H6 N6 C6 N1 358.5 179.9
C6 N6 H6 CA 178.8 180.1
H6 N6 CA CB 299.4 270.1
H6 N6 CA CJ 59.6 30.1
H6 N6 CA HA 179.2 150.1
N3 C2 N1 H2 180.0 180.0
N1 C2 N3 C4 0.1 360.0
N9 C4 N3 C2 180.0 179.9
C5 C4 N3 C2 359.8 359.8
N1 C2 N3 H2 180.0 180.0
N1 C2 H2 N3 180.0 180.0
H2 C2 N3 C4 180.1 180.0
N9 C4 N3 C5 180.2 180.2
C4 N3 C2 H2 180.1 180.0
CB CA N6 H6 299.4 270.1
N6 CA CB CJ 120.2 120.1
N6 CA CB HA 239.6 240.0
CJ CA CB HA 119.4 120.0
CB CA CJ CO 65.3 270.0
CB CA CJ CO' 245.6 89.7
OB CB CA HB1 120.8 120.0
OB CB CA HB2 240.5 240.0
CA CB OB HB 325.7 180.0
HB1 CB CA HB2 119.7 120.0
CJ CA N6 H6 59.6 30.1
N6 CA CJ CB 239.3 239.9
N6 CA CJ HA 119.9 120.0
CB CA CJ HA 240.5 240.0
CJ CA CB OB 266.3 300.0
CJ CA CB HB1 145.5 180.0
CJ CA CB HB2 25.9 60.0
CO CJ CA CO' 179.7 180.3
CA CJ CO CM 180.1 180.0
CA CJ CO HO 0.2 360.0
CA CJ CO' CM' 180.0 179.8
CA CJ CO' HO' 359.9 0.2
HA CA N6 H6 179.2 150.1
N6 CA HA CB 120.8 120.0
N6 CA HA CJ 240.3 240.0
CB CA HA CJ 119.6 120.0
HA CA CB OB 146.9 180.0
HA CA CB HB1 26.1 60.0
HA CA CB HB2 266.4 300.0
HA CA CJ CO 184.8 30.0
HA CA CJ CO' 5.1 209.7
OB CB CA CJ 266.3 300.0
OB CB CA HA 146.9 180.0
CA CB OB HB1 239.8 240.0
CA CB OB HB2 119.8 120.0
HB1 CB OB HB2 240.1 240.0
HB1 CB CA CJ 145.5 180.0
HB1 CB CA HA 26.1 60.0
CA CB HB1 OB 120.4 120.0
CA CB HB1 HB2 240.2 239.9
OB CB HB1 HB2 119.8 119.9
HB1 CB OB HB 85.9 300.0
HB2 CB CA CJ 25.9 60.0
HB2 CB CA HA 266.4 300.0
CA CB HB2 OB 240.2 240.0
CA CB HB2 HB1 119.7 120.1
OB CB HB2 HB1 239.5 240.1
HB2 CB OB HB 205.8 60.0
HB OB CB HB1 85.9 300.0
HB OB CB HB2 205.8 60.0
CO CJ CA HA 184.8 30.0
CA CJ CO CO' 180.3 179.7
CO CJ CO' CM' 0.3 359.5
CO CJ CO' HO' 180.2 179.9
CM CO CJ HO 179.8 180.0
CJ CO CM CP 359.9 0.0
CJ CO CM HM 180.2 179.9
CO' CJ CA HA 5.1 209.7
CA CJ CO' CO 179.7 180.3
CO' CJ CO CM 359.7 0.3
CO' CJ CO HO 179.9 180.3
CM' CO' CJ HO' 180.1 179.6
CJ CO' CM' CP 360.0 0.5
CJ CO' CM' HM' 179.6 180.3
CM CO CJ CO' 359.7 0.3
CJ CO CM HO 180.2 180.0
CP CM CO HM 179.8 180.1
CO CM CP CM' 0.3 359.9
CO CM CP HP 180.0 179.9
HO CO CJ CO' 179.9 180.3
CJ CO HO CM 179.8 180.0
HO CO CM CP 179.8 180.0
HO CO CM HM 360.0 359.9
CJ CO' CM' HO' 179.9 180.4
CM CP CM' CO' 359.7 359.8
CP CM' CO' HM' 180.4 180.2
CO' CM' CP HP 180.1 179.8
CJ CO' HO' CM' 180.1 179.6
HO' CO' CM' CP 180.1 180.0
HO' CO' CM' HM' 359.7 359.8
CP CM CO HO 179.8 180.0
CO CM CP HM 180.2 179.9
CO' CM' CP CM 359.7 359.8
CM CP CM' HM' 180.1 180.0
CM' CP CM HP 180.4 180.0
HM CM CO HO 360.0 359.9
CO CM HM CP 179.8 180.1
HM CM CP CM' 180.1 180.0
HM CM CP HP 359.8 0.0
CP CM' CO' HO' 180.1 180.0
CO' CM' CP HM' 179.6 179.8
CM' CP CM HM 180.1 180.0
CM CP CM' HP 179.6 180.0
HM' CM' CO' HO' 359.7 359.8
CO' CM' HM' CP 180.4 180.2
HM' CM' CP HP 0.4 0.1
HP CP CM HM 359.8 0.0
CM CP HP CM' 180.4 180.0
HP CP CM' HM' 0.4 0.1