PDB Chemical Component QYS

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for QYS

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C23 C24 1.546 1.544
C23 N22 1.523 1.468
C24 C20 1.544 1.547
O27 C26 1.396 1.429
O28 C16 1.220 1.213
C26 C18 1.593 1.530
C18 C19 1.580 1.530
C18 N17 1.446 1.465
N22 C21 1.344 1.344
C20 C19 1.550 1.530
C20 C21 1.506 1.513
C16 N17 1.375 1.348
C16 C11 1.602 1.507
C21 O25 1.243 1.213
O08 C09 1.395 1.346
O08 C07 1.443 1.452
C12 C11 1.510 1.530
C12 C13 1.559 1.530
N10 C09 1.380 1.348
N10 C11 1.463 1.465
C09 O29 1.212 1.215
C07 C06 1.533 1.530
C14 C13 1.519 1.530
C13 C15 1.512 1.530
C30 C06 1.518 1.530
C30 C31 1.499 1.530
C06 C05 1.541 1.530
C31 C02 1.561 1.530
C05 C04 1.517 1.530
C02 F01 1.312 1.400
C02 C04 1.575 1.530
C02 F03 1.339 1.399
C04 H1 1.100 1.090
C04 H2 1.100 1.091
C05 H3 1.100 1.089
C05 H4 1.100 1.090
C06 H5 1.100 1.090
C07 H6 1.100 1.090
C07 H7 1.100 1.090
C11 H8 1.100 1.090
C12 H9 1.100 1.090
C12 H10 1.100 1.090
C13 H11 1.100 1.091
C14 H12 1.100 1.089
C14 H13 1.100 1.090
C14 H14 1.100 1.090
C15 H15 1.100 1.090
C15 H16 1.100 1.090
C15 H17 1.100 1.090
C18 H18 1.100 1.090
C19 H19 1.101 1.091
C19 H20 1.100 1.090
C20 H21 1.100 1.089
C23 H22 1.100 1.090
C23 H23 1.100 1.090
C24 H24 1.100 1.089
C24 H25 1.100 1.090
C26 H26 1.100 1.091
C30 H28 1.100 1.090
C30 H29 1.100 1.090
C31 H30 1.100 1.090
C31 H31 1.100 1.090
N10 H32 1.000 0.970
N17 H33 1.000 0.970
N22 H34 1.000 0.970
O27 H35 0.950 0.967
C26 S1   1.814
S1 O1   1.421
S1 O2   1.421
S1 O3   1.522
O3 H36   0.967

Bond Angles for QYS

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C24 C23 N22 102.6 105.5
C24 C23 H22 111.2 110.2
C24 C23 H23 111.2 110.3
C23 C24 H24 110.2 111.0
C23 C24 H25 110.2 111.0
N22 C23 H22 111.2 110.2
N22 C23 H23 111.2 110.2
C23 N22 H34 123.8 124.4
C24 C20 H21 107.4 110.6
O27 C26 H26 118.3 109.4
O27 C26 S1   109.5
C26 C18 N17 105.4 109.5
C26 C18 H18 107.5 109.5
C19 C18 N17 113.4 109.4
C19 C18 H18 107.6 109.4
C18 C19 H19 109.3 109.4
C18 C19 H20 109.3 109.5
C16 N17 C18 125.0 120.0
N17 C18 H18 109.4 109.5
C18 N17 H33 117.5 120.1
N22 C21 O25 129.1 124.9
C20 C19 H19 109.3 109.5
C20 C19 H20 109.3 109.5
C20 C21 O25 119.4 124.9
C21 C20 H21 107.8 110.5
C16 N17 H33 117.5 120.0
C16 C11 H8 107.3 109.5
O08 C09 O29 116.8 120.0
O08 C07 H6 108.2 109.5
O08 C07 H7 108.2 109.4
C12 C11 H8 108.4 109.5
C12 C13 C15 111.5 109.5
C13 C12 H9 107.9 109.5
C13 C12 H10 108.0 109.5
C12 C13 H11 107.3 109.5
N10 C09 O29 117.5 120.0
N10 C11 H8 109.1 109.5
C07 C06 H5 107.5 109.5
C14 C13 C15 110.2 109.5
C14 C13 H11 107.8 109.5
C15 C13 H11 107.9 109.4
C13 C15 H15 109.5 109.5
C13 C15 H16 109.5 109.5
C13 C15 H17 109.5 109.4
C30 C06 H5 107.8 109.5
C31 C30 H28 109.4 109.4
C31 C30 H29 109.4 109.5
C30 C31 H30 109.1 109.5
C30 C31 H31 109.1 109.5
C06 C05 H3 108.9 109.5
C06 C05 H4 108.9 109.5
C31 C02 F01 107.5 109.5
C31 C02 F03 111.1 109.5
C05 C04 H1 108.7 109.5
C05 C04 H2 108.7 109.5
C04 C02 F01 109.2 109.4
F01 C02 F03 100.4 109.4
C04 C02 F03 111.0 109.5
C02 C04 H1 108.7 109.5
C02 C04 H2 108.7 109.5
H1 C04 H2 109.5 109.4
H3 C05 H4 109.4 109.5
H6 C07 H7 109.5 109.4
H9 C12 H10 109.5 109.5
H12 C14 H13 109.4 109.5
H12 C14 H14 109.4 109.5
H13 C14 H14 109.5 109.4
H15 C15 H16 109.5 109.5
H15 C15 H17 109.4 109.5
H16 C15 H17 109.5 109.5
H19 C19 H20 109.5 109.4
H22 C23 H23 109.5 110.3
H24 C24 H25 109.5 110.9
H26 C26 S1   109.5
H28 C30 H29 109.5 109.5
H30 C31 H31 109.5 109.5
C26 S1 O1   110.5
C26 S1 O2   110.5
C26 S1 O3   104.5
O1 S1 O2   121.1
O1 S1 O3   104.3
O2 S1 O3   104.3
S1 O3 H36   114.0

Torsion Angles for QYS

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
N22 C23 C24 H22 241.1 241.0
N22 C23 C24 H23 118.9 119.0
C24 C23 N22 H34 169.6 197.0
C23 C24 C20 H21 97.1 143.5
H22 C23 C24 H23 237.8 238.0
H24 C24 C23 H25 239.1 123.8
C24 C23 N22 H22 118.9 119.0
C24 C23 N22 H23 241.1 240.9
N22 C23 C24 H24 136.1 216.5
N22 C23 C24 H25 257.0 92.7
C23 N22 C21 O25 181.6 179.6
H22 C23 N22 H23 122.2 121.9
C24 C20 C19 H19 170.6 61.2
C24 C20 C19 H20 50.8 301.2
C24 C20 C21 O25 189.3 163.7
C21 C20 C24 H21 246.0 241.2
O27 C26 C18 H18 67.2 294.6
H26 C26 O27 S1   240.0
O27 C26 S1 O1   302.6
O27 C26 S1 O2   79.4
O27 C26 S1 O3   191.0
O28 C16 N17 H33 176.5 184.8
O28 C16 C11 H8 205.1 219.5
C19 C18 C26 N17 124.6 120.0
C19 C18 C26 H18 241.2 240.1
C26 C18 C19 H19 294.1 292.6
C26 C18 C19 H20 53.8 52.5
C16 N17 C18 C26 235.3 275.1
N17 C18 C26 H18 116.6 120.1
C26 C18 N17 H33 55.3 94.9
C26 C18 C19 N17 239.9 239.9
C26 C18 C19 H18 118.8 120.0
C16 N17 C18 C19 110.7 155.0
N17 C18 C19 H18 238.9 240.0
C19 C18 N17 H33 290.8 334.9
C20 C19 C18 H19 239.9 240.0
C20 C19 C18 H20 120.1 120.0
H19 C19 C18 H20 240.3 240.1
C26 C18 N17 H18 244.7 240.0
C19 C18 N17 H18 120.1 119.9
N17 C18 C19 H19 54.2 52.6
N17 C18 C19 H20 173.9 172.6
C16 N17 C18 H33 180.0 180.1
C20 C21 N22 O25 178.1 180.0
N22 C21 C20 H21 257.3 224.9
C20 C19 C18 N17 294.1 292.6
C20 C19 C18 H18 55.2 52.6
C18 C19 C20 H19 120.1 120.0
C18 C19 C20 H20 239.9 240.0
H19 C19 C20 H20 119.8 120.0
C24 C20 C21 H21 113.7 118.8
N22 C21 C20 O25 181.7 180.0
C21 C20 C19 H19 49.8 306.5
C21 C20 C19 H20 290.1 186.5
C26 C18 N17 C16 235.3 275.1
C19 C18 N17 C16 110.7 155.0
C16 N17 C18 H18 350.6 35.1
C18 N17 C16 H33 180.0 179.9
N17 C16 C11 H8 23.3 39.4
C12 C11 C16 H8 243.1 240.0
N10 C11 C16 H8 119.9 120.0
O25 C21 C20 H21 75.6 44.9
C09 O08 C07 H6 221.0 60.0
C09 O08 C07 H7 339.5 300.0
N10 C09 O08 O29 183.0 180.0
O08 C07 C06 H5 345.2 305.0
H6 C07 O08 H7 241.4 120.0
C16 C11 C12 H8 116.2 120.0
N10 C11 C12 H8 240.2 240.0
C13 C12 C11 H8 58.8 303.4
C14 C13 C12 C15 236.0 240.0
C14 C13 C12 H11 118.1 120.1
C15 C13 C12 H11 242.0 240.1
C12 C13 C15 H15 180.0 59.9
C12 C13 C15 H16 300.0 180.0
C12 C13 C15 H17 60.0 299.9
H9 C12 C13 H10 118.2 120.0
O08 C09 N10 O29 177.0 180.0
C16 C11 N10 H8 241.1 240.0
C12 C11 N10 H8 119.4 120.0
C11 N10 C09 O29 348.9 355.0
C30 C06 C07 H5 119.7 120.0
C07 C06 C05 H3 290.2 60.0
C07 C06 C05 H4 49.4 300.0
C12 C13 C14 C15 124.7 120.0
C14 C13 C12 H9 70.8 304.7
C14 C13 C12 H10 312.5 184.7
C12 C13 C14 H11 242.2 240.0
C15 C13 C14 H11 117.5 120.0
C14 C13 C15 H15 304.9 180.0
C14 C13 C15 H16 64.9 300.0
C14 C13 C15 H17 184.9 60.0
C15 C13 C12 H9 194.7 64.7
C15 C13 C12 H10 76.5 304.7
C12 C13 C15 H11 117.6 120.0
C14 C13 C15 H11 242.5 240.0
H15 C15 C13 H16 240.0 240.0
H15 C15 C13 H17 120.0 120.0
H16 C15 C13 H17 240.0 240.0
C07 C06 C30 H5 240.4 240.0
C30 C06 C05 H3 56.6 180.0
C30 C06 C05 H4 175.9 60.0
C31 C30 C06 H5 314.9 300.0
C30 C31 C02 F01 278.3 300.0
C30 C31 C02 F03 169.3 180.0
H28 C30 C31 H29 119.9 120.0
H30 C31 C30 H31 240.4 120.0
C06 C05 C04 H1 166.8 300.0
C06 C05 C04 H2 285.9 180.0
H3 C05 C06 H4 240.8 120.0
C04 C02 C31 F01 122.7 120.0
F01 C02 C31 F03 109.0 120.0
C04 C02 C31 F03 231.7 240.0
C31 C02 C04 H1 204.4 60.1
C31 C02 C04 H2 85.3 180.0
C05 C04 C02 F01 86.6 60.0
C05 C04 C02 F03 196.4 180.0
C02 C04 C05 H1 239.6 120.0
C02 C04 C05 H2 120.5 240.0
H1 C04 C05 H2 240.9 120.0
C31 C02 F01 F03 243.7 240.0
C04 C02 F01 F03 116.7 120.0
F01 C02 C04 H1 326.2 180.0
F01 C02 C04 H2 207.1 300.0
C31 C02 C04 F01 238.2 240.0
C31 C02 C04 F03 128.4 120.0
C05 C04 C02 H1 120.4 240.0
C05 C04 C02 H2 239.5 120.0
F01 C02 C04 F03 250.2 240.0
H1 C04 C02 H2 119.1 240.1
C31 C02 F03 F01 113.5 120.0
C04 C02 F03 F01 244.7 240.0
F03 C02 C04 H1 76.0 300.0
F03 C02 C04 H2 316.9 60.0
C05 C04 H1 H2 118.6 240.0
H1 C04 C02 F01 326.2 180.0
H1 C04 C02 F03 76.0 300.0
C02 C04 H1 H2 241.4 120.0
C05 C04 H2 H1 241.4 120.0
H2 C04 C02 F01 207.1 300.0
H2 C04 C02 F03 316.9 60.0
C02 C04 H2 H1 118.6 240.0
C06 C05 H3 H4 118.9 240.0
H3 C05 C04 H1 46.4 60.0
H3 C05 C04 H2 165.5 300.0
C06 C05 H4 H3 241.1 120.0
H4 C05 C04 H1 287.2 180.0
H4 C05 C04 H2 46.3 60.0
H5 C06 C05 H3 172.0 300.0
H5 C06 C05 H4 291.3 180.0
O08 C07 H6 H7 117.7 240.1
H6 C07 C06 H5 224.5 65.1
O08 C07 H7 H6 242.2 120.0
H7 C07 C06 H5 105.9 185.1
H9 C12 C11 H8 179.7 63.4
H9 C12 C13 C15 194.7 64.7
C13 C12 H9 H10 242.7 240.0
H9 C12 C13 H11 312.7 184.7
H10 C12 C11 H8 297.9 183.5
H10 C12 C13 C15 76.5 304.7
C13 C12 H10 H9 117.2 120.0
H10 C12 C13 H11 194.5 64.6
C12 C13 H11 C15 239.7 240.0
H11 C13 C12 H9 312.7 184.7
H11 C13 C12 H10 194.5 64.6
C14 C13 H11 C15 119.0 120.0
H11 C13 C15 H15 62.4 300.0
H11 C13 C15 H16 182.4 60.0
H11 C13 C15 H17 302.4 180.0
H12 C14 C13 C15 55.3 304.1
H12 C14 C13 H11 297.7 184.1
H13 C14 H12 H14 120.0 120.0
H13 C14 C13 C15 175.3 64.1
H13 C14 C13 H11 57.7 304.2
H12 C14 H13 H14 240.1 239.9
H14 C14 C13 C15 295.3 184.1
H14 C14 C13 H11 177.8 64.1
H12 C14 H14 H13 120.0 120.1
H15 C15 C13 H11 62.4 300.0
C13 C15 H15 H16 120.0 120.0
C13 C15 H15 H17 240.0 240.0
H16 C15 H15 H17 120.0 120.0
H16 C15 C13 H11 182.4 60.0
C13 C15 H16 H15 240.0 240.0
C13 C15 H16 H17 120.0 119.9
H15 C15 H16 H17 240.1 240.0
H17 C15 C13 H11 302.4 180.0
C13 C15 H17 H15 120.0 120.0
C13 C15 H17 H16 240.0 240.0
H15 C15 H17 H16 120.0 120.0
C26 C18 H18 N17 113.9 120.1
C19 C18 H18 N17 236.4 240.1
H18 C18 C19 H19 175.3 172.6
H18 C18 C19 H20 295.0 292.5
H18 C18 N17 H33 170.6 215.0
H19 C19 C18 N17 54.2 52.6
H19 C19 C18 H18 175.3 172.6
C18 C19 H19 H20 119.6 119.9
C20 C19 H19 H20 240.3 240.0
H20 C19 C18 N17 173.9 172.6
H20 C19 C18 H18 295.0 292.5
C18 C19 H20 H19 240.4 240.1
C20 C19 H20 H19 119.7 120.0
H21 C20 C19 H19 290.2 183.9
H21 C20 C19 H20 170.4 63.9
H21 C20 C21 O25 75.6 44.9
C24 C23 H22 N22 246.4 243.9
C24 C23 H22 H23 123.2 122.0
H22 C23 C24 H24 254.9 335.5
H22 C23 C24 H25 15.9 211.7
N22 C23 H22 H23 236.8 238.1
H22 C23 N22 H34 50.7 78.0
C24 C23 H23 N22 113.6 116.1
C24 C23 H23 H22 236.8 238.0
H23 C23 C24 H24 17.2 97.5
H23 C23 C24 H25 138.1 333.7
N22 C23 H23 H22 123.2 121.9
H23 C23 N22 H34 288.5 316.1
H24 C24 C23 N22 136.1 216.5
H24 C24 C23 H22 254.9 335.5
H24 C24 C23 H23 17.2 97.5
C23 C24 H24 H25 121.4 236.2
H24 C24 C20 H21 337.5 261.7
H25 C24 C23 N22 257.0 92.7
H25 C24 C23 H22 15.9 211.7
H25 C24 C23 H23 138.1 333.7
C23 C24 H25 H24 238.6 123.8
H25 C24 C20 H21 216.6 25.4
O27 C26 H26 S1   120.0
H26 C26 C18 N17 316.8 294.8
H26 C26 C18 H18 200.3 174.7
H26 C26 S1 O1   62.6
H26 C26 S1 O2   199.4
H26 C26 S1 O3   311.0
H28 C30 C06 H5 74.9 59.9
C31 C30 H28 H29 240.1 240.0
H28 C30 C31 H30 301.8 60.0
H28 C30 C31 H31 61.4 300.0
H29 C30 C06 H5 194.8 180.0
C31 C30 H29 H28 119.9 120.0
H29 C30 C31 H30 181.9 300.0
H29 C30 C31 H31 301.5 180.0
H30 C31 C30 H28 301.8 60.0
H30 C31 C30 H29 181.9 300.0
C30 C31 H30 H31 119.4 239.9
H30 C31 C02 F01 158.1 60.0
H30 C31 C02 F03 49.1 300.1
H31 C31 C30 H28 61.4 300.0
H31 C31 C30 H29 301.5 180.0
C30 C31 H31 H30 240.6 120.1
H31 C31 C02 F01 38.5 180.0
H31 C31 C02 F03 289.5 60.0
H32 N10 C09 O29 168.9 175.1
H32 N10 C11 H8 249.9 141.8
C16 N17 H33 C18 180.0 179.9
H33 N17 C18 H18 170.6 215.0
H34 N22 C23 H22 50.7 78.0
H34 N22 C23 H23 288.5 316.1
H34 N22 C21 O25 1.6 359.6
H35 O27 C26 H26 49.0 60.0
H35 O27 C26 S1   180.0
O27 C26 S1 H26   240.0
S1 C26 C18 N17   174.7
S1 C26 C18 H18   54.7
O1 S1 C26 O2   223.2
O1 S1 C26 O3   111.6
O2 S1 C26 O3   248.4
C26 S1 O3 H36   180.0
C26 S1 O1 O2   131.5
C26 S1 O1 O3   248.3
O2 S1 O1 O3   116.7
O1 S1 O3 H36   63.9
C26 S1 O2 O1   228.5
C26 S1 O2 O3   111.7
O1 S1 O2 O3   243.2
O2 S1 O3 H36   296.0
C26 S1 O3 O1   116.1
C26 S1 O3 O2   243.9
O1 S1 O3 O2   127.9