Atom Nomenclature for QYS

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for QYS

Atom Name (V3) Atom Name (V2)
C02 C1
C04 C2
C05 C3
C06 C4
C07 C5
C09 C6
C11 C7
C12 C8
C13 C9
C14 C10
C15 C11
C16 C12
C18 C13
C19 C14
C20 C15
C21 C16
C23 C17
C24 C18
C26 C19
C30 C20
C31 C21
F01 F1
F03 F2
N10 N1
N17 N2
N22 N3
O08 O1
O25 O2
O27 O3
O28 O4
O29 O5
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23
H24 H24
H25 H25
H26 H26
H28 H28
H29 H29
H30 H30
H31 H31
H32 H32
H33 H33
H34 H34
H35 H35
S1 S1
O1 O6
O2 O7
O3 O8
H36 H36