PDB Chemical Component QSO
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for QSO
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O1 |
C2 |
1.388 |
1.333 |
| O1 |
C8A |
1.379 |
1.347 |
| C8 |
C8A |
1.438 |
1.387 |
| C8 |
C7 |
1.431 |
1.386 |
| C2 |
C3 |
1.373 |
1.357 |
| O4 |
C7 |
1.355 |
1.357 |
| C8A |
C4A |
1.440 |
1.407 |
| C7 |
C6 |
1.421 |
1.388 |
| C6' |
C5' |
1.422 |
1.379 |
| C6' |
C1' |
1.433 |
1.394 |
| C3 |
C1' |
1.495 |
1.484 |
| C3 |
C4 |
1.523 |
1.476 |
| C5' |
C4' |
1.433 |
1.388 |
| C1' |
C2' |
1.434 |
1.393 |
| C4A |
C4 |
1.511 |
1.473 |
| C4A |
C5 |
1.522 |
1.400 |
| CM |
O5 |
1.420 |
1.429 |
| C6 |
C5 |
1.500 |
1.383 |
| C4 |
O2 |
1.230 |
1.219 |
| C4' |
O5 |
1.382 |
1.360 |
| C4' |
C3' |
1.429 |
1.389 |
| C2' |
C3' |
1.422 |
1.379 |
| C5 |
O3 |
1.360 |
1.357 |
| C2 |
H2 |
1.080 |
1.081 |
| O4 |
HO4 |
0.950 |
0.966 |
| C6 |
H6 |
1.080 |
1.080 |
| C8 |
H8 |
1.080 |
1.081 |
| C2' |
H2' |
1.080 |
1.081 |
| C3' |
H3' |
1.080 |
1.080 |
| C5' |
H5' |
1.080 |
1.080 |
| C6' |
H6' |
1.080 |
1.080 |
| O3 |
HO3 |
0.950 |
0.967 |
| CM |
HM1 |
1.100 |
1.091 |
| CM |
HM2 |
1.100 |
1.090 |
| CM |
HM3 |
1.100 |
1.090 |
Bond Angles for QSO
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O1 |
C2 |
H2 |
116.8 |
118.4 |
| C2 |
C3 |
C1' |
121.2 |
121.0 |
| C2 |
C3 |
C4 |
117.4 |
118.1 |
| C3 |
C2 |
H2 |
116.8 |
118.5 |
| O4 |
C7 |
C6 |
121.3 |
119.6 |
| C7 |
O4 |
HO4 |
109.5 |
114.0 |
| C8A |
C4A |
C5 |
119.8 |
120.4 |
| C7 |
C6 |
C5 |
121.5 |
120.1 |
| C7 |
C6 |
H6 |
119.2 |
120.0 |
| C6' |
C5' |
H5' |
119.1 |
120.0 |
| C3 |
C1' |
C2' |
122.0 |
120.1 |
| C3 |
C4 |
O2 |
120.9 |
122.1 |
| C5' |
C4' |
O5 |
121.0 |
120.0 |
| C1' |
C2' |
C3' |
121.3 |
120.0 |
| C1' |
C2' |
H2' |
119.4 |
120.1 |
| C4A |
C4 |
O2 |
122.4 |
122.1 |
| C4A |
C5 |
C6 |
117.3 |
119.4 |
| C4A |
C5 |
O3 |
124.1 |
120.2 |
| C6 |
C5 |
O3 |
118.6 |
120.3 |
| C5 |
C6 |
H6 |
119.2 |
119.9 |
| C4' |
C3' |
H3' |
119.1 |
119.9 |
| C3' |
C2' |
H2' |
119.3 |
120.0 |
| C2' |
C3' |
H3' |
119.1 |
120.0 |
| C5 |
O3 |
HO3 |
109.5 |
114.0 |
| HM1 |
CM |
HM2 |
109.5 |
109.5 |
| HM1 |
CM |
HM3 |
109.4 |
109.4 |
| HM2 |
CM |
HM3 |
109.5 |
109.5 |
Torsion Angles for QSO
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O1 |
C2 |
C3 |
C1' |
180.2 |
179.4 |
| C3 |
C2 |
O1 |
H2 |
180.0 |
179.7 |
| C8A |
O1 |
C2 |
H2 |
180.6 |
196.3 |
| C8 |
C7 |
O4 |
HO4 |
191.0 |
270.5 |
| C8 |
C7 |
C6 |
H6 |
180.2 |
179.7 |
| O1 |
C2 |
C3 |
H2 |
180.0 |
180.3 |
| C2 |
C3 |
C1' |
C2' |
119.3 |
64.9 |
| C2 |
C3 |
C4 |
O2 |
179.6 |
167.2 |
| O4 |
C7 |
C6 |
C5 |
180.1 |
180.2 |
| O4 |
C7 |
C6 |
H6 |
0.1 |
0.2 |
| C8A |
C4A |
C4 |
O2 |
180.0 |
192.0 |
| C8A |
C4A |
C5 |
C6 |
0.7 |
359.9 |
| C8A |
C4A |
C5 |
O3 |
180.4 |
179.9 |
| C6 |
C7 |
O4 |
HO4 |
11.1 |
90.0 |
| C4A |
C5 |
C6 |
C7 |
359.6 |
0.1 |
| C7 |
C6 |
C5 |
O3 |
180.0 |
180.1 |
| C5 |
C6 |
C7 |
H6 |
180.0 |
180.0 |
| C6' |
C5' |
C4' |
O5 |
179.5 |
179.7 |
| C6' |
C1' |
C2' |
H2' |
179.7 |
180.3 |
| C2 |
C3 |
C1' |
C4 |
179.5 |
180.0 |
| C1' |
C3 |
C2 |
H2 |
0.2 |
359.1 |
| C1' |
C3 |
C4 |
O2 |
359.2 |
347.2 |
| C3 |
C1' |
C2' |
C3' |
179.9 |
180.0 |
| C3 |
C1' |
C2' |
H2' |
359.9 |
0.0 |
| C2 |
C3 |
C4 |
C1' |
180.4 |
180.0 |
| C4 |
C3 |
C2 |
H2 |
179.8 |
179.1 |
| C4A |
C4 |
C3 |
O2 |
180.5 |
180.0 |
| C5' |
C4' |
C3' |
H3' |
180.0 |
180.0 |
| C3' |
C2' |
C1' |
H2' |
180.0 |
180.0 |
| C1' |
C2' |
C3' |
H3' |
180.1 |
180.0 |
| C2 |
C3 |
C4 |
C4A |
0.1 |
347.2 |
| C3 |
C4 |
C4A |
O2 |
179.5 |
180.0 |
| C7 |
C6 |
C5 |
C4A |
359.6 |
0.1 |
| C5 |
C4A |
C4 |
O2 |
1.1 |
12.6 |
| C6 |
C5 |
C4A |
O3 |
180.4 |
180.0 |
| C4A |
C5 |
C6 |
H6 |
179.6 |
180.1 |
| C4A |
C5 |
O3 |
HO3 |
344.6 |
89.9 |
| C7 |
C6 |
C5 |
H6 |
180.0 |
180.0 |
| C4A |
C5 |
C6 |
O3 |
179.6 |
180.0 |
| C6 |
C5 |
O3 |
HO3 |
164.2 |
270.0 |
| O5 |
C4' |
C3' |
H3' |
0.4 |
0.0 |
| C4' |
C3' |
C2' |
H2' |
180.2 |
180.0 |
| C2' |
C3' |
C4' |
H3' |
180.0 |
179.9 |
| C1' |
C2' |
C3' |
H2' |
180.0 |
180.0 |
| C4' |
C3' |
C2' |
H3' |
180.0 |
180.1 |
| C4A |
C5 |
O3 |
C6 |
180.4 |
180.0 |
| O3 |
C5 |
C6 |
H6 |
360.0 |
0.1 |
| H2 |
C2 |
C3 |
C1' |
0.2 |
359.1 |
| H2 |
C2 |
C3 |
C4 |
179.8 |
179.1 |
| HO4 |
O4 |
C7 |
C6 |
11.1 |
90.0 |
| C7 |
C6 |
H6 |
C5 |
180.0 |
180.0 |
| H6 |
C6 |
C5 |
O3 |
360.0 |
0.1 |
| C1' |
C2' |
H2' |
C3' |
180.0 |
180.0 |
| H2' |
C2' |
C3' |
H3' |
0.2 |
360.0 |
| H3' |
C3' |
C2' |
H2' |
0.2 |
360.0 |
| H5' |
C5' |
C4' |
O5 |
359.5 |
359.9 |
| H6' |
C6' |
C5' |
H5' |
360.0 |
359.8 |
| HM2 |
CM |
HM1 |
HM3 |
120.1 |
120.0 |
| HM1 |
CM |
HM2 |
HM3 |
240.0 |
240.1 |
| HM1 |
CM |
HM3 |
HM2 |
120.1 |
120.0 |