PDB Chemical Component QSI

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for QSI

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N CA 1.333 1.469
N HN1 1.019 1.010
N HN2 1.020 1.009
CA CB 1.522 1.530
CA C 1.537 1.505
CA HA 1.114 1.091
CB CG 1.516 1.531
CB HB1 1.115 1.088
CB HB2 1.116 1.090
CG CD 1.525 1.506
CG HG1 1.115 1.090
CG HG2 1.114 1.091
CD OE1 1.230 1.212
CD NE2 1.465 1.348
NE2 HN21 1.020 0.970
NE2 HN22 1.020 0.969
C O 1.246 1.213
C N10 1.424 1.347
N10 S 1.680 1.656
N10 HN0 1.020 0.971
S O1S 1.499 1.420
S O2S 1.415 1.422
S O5' 1.509 1.522
O5' C5' 1.433 1.428
C5' C4' 1.506 1.528
C5' H5'1 1.115 1.090
C5' H5'2 1.116 1.091
C4' O4' 1.451 1.437
C4' C3' 1.519 1.540
C4' H4' 1.115 1.090
O4' C1' 1.422 1.444
C1' N9 1.466 1.463
C1' C2' 1.529 1.549
C1' H1' 1.116 1.091
N9 C4 1.378 1.372
N9 C8 1.371 1.363
C4 N3 1.346 1.329
C4 C5 1.385 1.405
N3 C2 1.334 1.316
C2 N1 1.337 1.321
C2 H2 1.103 1.080
N1 C6 1.355 1.329
C6 N6 1.347 1.383
C6 C5 1.415 1.405
N6 HN61 1.020 0.970
N6 HN62 1.021 0.970
C5 N7 1.387 1.355
N7 C8 1.315 1.302
C8 H8 1.103 1.080
C2' O2' 1.419 1.429
C2' C3' 1.521 1.551
C2' H2' 1.115 1.090
O2' HO2 0.950 0.967
C3' O3' 1.418 1.429
C3' H3' 1.115 1.090
O3' HO3 0.949 0.968

Bond Angles for QSI

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
CA N HN1 110.0 106.7
CA N HN2 112.0 106.6
N CA CB 110.0 109.5
N CA C 111.0 109.5
N CA HA 108.5 109.4
HN1 N HN2 112.1 106.7
CB CA C 110.6 109.5
CB CA HA 108.9 109.5
CA CB CG 114.0 109.5
CA CB HB1 110.6 109.5
CA CB HB2 110.5 109.5
C CA HA 107.9 109.5
CA C O 119.4 120.0
CA C N10 118.7 120.1
CG CB HB1 110.6 109.5
CG CB HB2 110.6 109.4
CB CG CD 112.5 109.5
CB CG HG1 111.0 109.5
CB CG HG2 111.1 109.5
HB1 CB HB2 99.7 109.5
CD CG HG1 111.1 109.5
CD CG HG2 111.1 109.4
CG CD OE1 121.2 120.0
CG CD NE2 116.4 120.0
HG1 CG HG2 99.3 109.5
OE1 CD NE2 122.3 120.0
CD NE2 HN21 122.3 120.0
CD NE2 HN22 116.4 120.0
HN21 NE2 HN22 121.3 120.0
O C N10 119.8 119.9
C N10 S 120.9 120.1
C N10 HN0 111.3 120.0
S N10 HN0 127.8 119.9
N10 S O1S 107.9 105.8
N10 S O2S 106.2 105.7
N10 S O5' 110.1 107.4
O1S S O2S 119.4 125.3
O1S S O5' 105.9 105.8
O2S S O5' 107.2 105.7
S O5' C5' 121.7 106.8
O5' C5' C4' 109.7 109.5
O5' C5' H5'1 112.2 109.5
O5' C5' H5'2 112.2 109.5
C4' C5' H5'1 112.2 109.4
C4' C5' H5'2 112.1 109.5
C5' C4' O4' 109.1 109.9
C5' C4' C3' 115.5 109.9
C5' C4' H4' 103.6 109.9
H5'1 C5' H5'2 98.3 109.4
O4' C4' C3' 102.3 107.4
O4' C4' H4' 116.6 109.9
C4' O4' C1' 109.6 107.0
C3' C4' H4' 110.2 109.8
C4' C3' C2' 101.8 104.1
C4' C3' O3' 111.7 110.8
C4' C3' H3' 113.2 110.4
O4' C1' N9 109.5 110.7
O4' C1' C2' 107.0 103.5
O4' C1' H1' 113.0 110.6
N9 C1' C2' 114.4 110.8
N9 C1' H1' 105.3 110.5
C1' N9 C4 125.5 126.3
C1' N9 C8 128.8 126.2
C2' C1' H1' 107.9 110.6
C1' C2' O2' 109.6 110.9
C1' C2' C3' 101.2 102.1
C1' C2' H2' 115.4 110.9
C4 N9 C8 105.7 107.4
N9 C4 N3 127.3 134.9
N9 C4 C5 105.9 106.0
N9 C8 N7 113.8 110.0
N9 C8 H8 124.9 125.1
N3 C4 C5 126.8 119.0
C4 N3 C2 110.9 120.7
C4 C5 C6 116.8 118.2
C4 C5 N7 110.6 107.1
N3 C2 N1 129.2 122.4
N3 C2 H2 115.2 118.8
N1 C2 H2 115.6 118.8
C2 N1 C6 118.7 121.2
N1 C6 N6 118.3 120.8
N1 C6 C5 117.6 118.4
N6 C6 C5 124.1 120.8
C6 N6 HN61 118.4 120.0
C6 N6 HN62 109.0 120.0
C6 C5 N7 132.5 134.7
HN61 N6 HN62 109.0 120.0
C5 N7 C8 104.0 109.4
N7 C8 H8 121.3 125.0
O2' C2' C3' 111.7 110.9
O2' C2' H2' 105.6 110.8
C2' O2' HO2 109.6 106.8
C3' C2' H2' 113.5 111.0
C2' C3' O3' 110.1 110.5
C2' C3' H3' 114.8 110.5
O3' C3' H3' 105.4 110.4
C3' O3' HO3 111.7 106.8

Torsion Angles for QSI

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
HN1 N CA HN2 125.4 113.7
CB CA N C 237.3 239.9
CB CA N HA 119.0 120.0
N CA CB CG 219.6 300.0
N CA CB HB1 344.9 60.0
N CA CB HB2 94.3 180.1
C CA N HA 241.7 240.1
N CA C O 163.3 329.9
N CA C N10 359.9 150.0
CA N HN1 HN2 234.7 246.3
HN1 N CA CB 180.0 53.8
HN1 N CA C 302.7 173.8
HN1 N CA HA 61.0 293.8
CA N HN2 HN1 124.2 113.8
HN2 N CA CB 54.7 300.0
HN2 N CA C 177.3 60.1
HN2 N CA HA 295.7 180.0
CB CA N HN1 180.0 53.8
CB CA N HN2 54.7 300.0
N CA CB C 122.9 120.0
N CA CB HA 241.3 240.1
C CA CB HA 118.4 120.0
CB CA C O 285.6 90.0
CB CA C N10 122.2 270.0
CG CB CA HB1 234.7 240.0
CG CB CA HB2 125.3 119.9
CA CB CG CD 181.5 180.0
CA CB CG HG1 306.7 300.1
CA CB CG HG2 56.2 60.1
HB1 CB CA HB2 250.6 239.9
C CA N HN1 302.7 173.8
C CA N HN2 177.3 60.1
N CA C CB 237.7 240.0
N CA C HA 118.7 119.9
CB CA C HA 241.0 239.9
C CA CB CG 96.7 180.0
C CA CB HB1 222.0 300.0
C CA CB HB2 331.4 60.0
O C CA N10 163.4 180.0
CA C N10 S 200.7 180.0
CA C N10 HN0 20.7 360.0
HA CA N HN1 61.0 293.8
HA CA N HN2 295.7 180.0
N CA HA CB 119.7 120.0
N CA HA C 239.7 240.0
CB CA HA C 120.0 120.1
HA CA CB CG 338.3 59.9
HA CA CB HB1 103.6 179.9
HA CA CB HB2 213.0 300.0
HA CA C O 44.6 210.1
HA CA C N10 241.2 30.1
CG CB CA C 96.7 180.0
CG CB CA HA 338.3 59.9
CA CB CG HB1 125.3 120.0
CA CB CG HB2 234.7 240.1
HB1 CB CG HB2 109.4 120.0
CD CG CB HG1 234.8 239.9
CD CG CB HG2 125.2 119.9
CB CG CD OE1 51.5 0.1
CB CG CD NE2 229.7 180.0
HG1 CG CB HG2 250.5 240.0
HB1 CB CA C 222.0 300.0
HB1 CB CA HA 103.6 179.9
CA CB HB1 CG 232.8 240.0
CA CB HB1 HB2 116.4 120.0
CG CB HB1 HB2 243.6 240.0
HB1 CB CG CD 56.2 60.0
HB1 CB CG HG1 181.4 180.0
HB1 CB CG HG2 291.0 300.0
HB2 CB CA C 331.4 60.0
HB2 CB CA HA 213.0 300.0
CA CB HB2 CG 127.2 120.0
CA CB HB2 HB1 243.6 240.0
CG CB HB2 HB1 116.4 120.0
HB2 CB CG CD 306.7 299.9
HB2 CB CG HG1 72.0 60.0
HB2 CB CG HG2 181.5 180.0
CD CG CB HB1 56.2 60.0
CD CG CB HB2 306.7 299.9
CB CG CD HG1 125.2 120.0
CB CG CD HG2 234.7 240.0
HG1 CG CD HG2 109.5 120.0
OE1 CD CG NE2 181.8 180.1
CG CD NE2 HN21 1.8 180.0
CG CD NE2 HN22 180.0 0.0
HG1 CG CB HB1 181.4 180.0
HG1 CG CB HB2 72.0 60.0
CB CG HG1 CD 234.0 240.0
CB CG HG1 HG2 117.0 120.0
CD CG HG1 HG2 243.0 240.0
HG1 CG CD OE1 286.3 240.1
HG1 CG CD NE2 104.5 60.0
HG2 CG CB HB1 291.0 300.0
HG2 CG CB HB2 181.5 180.0
CB CG HG2 CD 126.1 120.0
CB CG HG2 HG1 243.0 240.0
CD CG HG2 HG1 117.0 120.1
HG2 CG CD OE1 176.8 120.0
HG2 CG CD NE2 354.9 300.0
OE1 CD CG HG1 286.3 240.1
OE1 CD CG HG2 176.8 120.0
CG CD OE1 NE2 178.1 179.9
OE1 CD NE2 HN21 180.0 360.0
OE1 CD NE2 HN22 358.1 179.9
NE2 CD CG HG1 104.5 60.0
NE2 CD CG HG2 354.9 300.0
CG CD NE2 OE1 181.8 180.1
HN21 NE2 CD HN22 181.9 180.0
CD NE2 HN21 HN22 178.1 180.0
CD NE2 HN22 HN21 181.8 180.0
O C CA HA 44.6 210.1
CA C O N10 196.8 180.0
O C N10 S 37.4 0.0
O C N10 HN0 217.4 180.0
N10 C CA HA 241.2 30.1
CA C N10 O 163.3 180.0
S N10 C HN0 180.0 180.0
C N10 S O1S 284.3 172.6
C N10 S O2S 155.2 307.4
C N10 S O5' 39.5 59.9
C N10 S HN0 180.0 180.0
O1S S N10 O2S 129.1 225.2
O1S S N10 O5' 244.8 112.7
O2S S N10 O5' 115.7 247.4
N10 S O5' C5' 54.8 90.0
C N10 HN0 S 180.0 180.0
HN0 N10 S O1S 104.3 352.6
HN0 N10 S O2S 335.2 127.4
HN0 N10 S O5' 219.5 240.0
O1S S N10 HN0 104.3 352.6
N10 S O1S O2S 238.8 123.1
N10 S O1S O5' 117.9 246.2
O2S S O1S O5' 239.1 123.1
O1S S O5' C5' 171.2 337.3
O2S S N10 HN0 335.2 127.4
N10 S O2S O1S 122.1 236.8
N10 S O2S O5' 242.3 113.7
O1S S O2S O5' 120.2 236.9
O2S S O5' C5' 299.7 202.6
O5' S N10 HN0 219.5 240.0
N10 S O5' O1S 243.5 112.7
N10 S O5' O2S 115.1 247.4
O1S S O5' O2S 231.5 134.7
S O5' C5' C4' 199.5 180.0
S O5' C5' H5'1 324.8 300.1
S O5' C5' H5'2 74.3 60.0
C4' C5' O5' H5'1 234.7 240.0
C4' C5' O5' H5'2 125.2 120.0
O5' C5' C4' O4' 297.2 61.7
O5' C5' C4' C3' 51.7 179.7
O5' C5' C4' H4' 172.4 300.7
H5'1 C5' O5' H5'2 250.5 240.1
O5' C5' C4' H5'1 125.3 120.1
O5' C5' C4' H5'2 234.7 240.0
H5'1 C5' C4' H5'2 109.4 119.9
O4' C4' C5' C3' 245.5 242.0
O4' C4' C5' H4' 124.8 121.0
C5' C4' O4' C1' 150.8 146.0
C3' C4' C5' H4' 239.3 239.0
C5' C4' C3' C2' 200.3 238.6
C5' C4' C3' O3' 82.9 119.8
C5' C4' C3' H3' 324.0 357.2
O5' C5' H5'1 C4' 236.1 239.9
O5' C5' H5'1 H5'2 118.1 120.0
C4' C5' H5'1 H5'2 242.0 240.1
H5'1 C5' C4' O4' 171.9 301.6
H5'1 C5' C4' C3' 286.4 59.6
H5'1 C5' C4' H4' 47.1 180.6
O5' C5' H5'2 C4' 123.9 120.1
O5' C5' H5'2 H5'1 241.9 240.0
C4' C5' H5'2 H5'1 118.0 119.9
H5'2 C5' C4' O4' 62.5 181.8
H5'2 C5' C4' C3' 177.0 299.8
H5'2 C5' C4' H4' 297.7 60.7
O4' C4' C5' H5'1 171.9 301.6
O4' C4' C5' H5'2 62.5 181.8
C5' C4' O4' C3' 122.9 119.6
C5' C4' O4' H4' 243.2 239.0
C3' C4' O4' H4' 120.3 119.5
O4' C4' C3' C2' 318.7 358.1
O4' C4' C3' O3' 201.2 239.3
O4' C4' C3' H3' 82.4 116.7
C4' O4' C1' N9 232.4 201.3
C4' O4' C1' C2' 356.9 320.0
C4' O4' C1' H1' 115.4 78.4
C3' C4' C5' H5'1 286.4 59.6
C3' C4' C5' H5'2 177.0 299.8
C5' C4' C3' O4' 241.6 240.5
C5' C4' C3' H4' 117.0 121.0
O4' C4' C3' H4' 235.4 240.5
C3' C4' O4' C1' 27.9 26.4
C1' C2' C3' C4' 38.8 339.0
O2' C2' C3' C4' 282.3 220.8
C4' C3' C2' H2' 163.1 97.2
C2' C3' C4' O3' 117.4 118.8
C2' C3' C4' H3' 236.3 241.4
O3' C3' C4' H3' 118.8 122.7
C4' C3' O3' HO3 179.9 176.2
H4' C4' C5' H5'1 47.1 180.6
H4' C4' C5' H5'2 297.7 60.7
C5' C4' H4' O4' 119.8 121.0
C5' C4' H4' C3' 235.8 239.0
O4' C4' H4' C3' 116.0 118.0
H4' C4' O4' C1' 267.6 266.9
H4' C4' C3' C2' 83.3 117.6
H4' C4' C3' O3' 325.8 358.8
H4' C4' C3' H3' 207.0 236.2
C1' O4' C4' C3' 27.9 26.4
C1' O4' C4' H4' 267.6 266.9
N9 C1' O4' C2' 235.5 241.3
N9 C1' O4' H1' 117.0 122.8
O4' C1' N9 C4 210.0 208.3
O4' C1' N9 C8 28.9 28.5
C2' C1' O4' H1' 241.4 241.6
O4' C1' C2' O2' 95.2 155.2
O4' C1' C2' C3' 337.2 37.1
O4' C1' C2' H2' 214.2 278.8
O4' C1' N9 C2' 120.0 114.2
O4' C1' N9 H1' 238.3 237.1
C2' C1' N9 H1' 118.3 122.9
N9 C1' C2' O2' 216.6 273.9
N9 C1' C2' C3' 98.6 155.7
N9 C1' C2' H2' 335.6 37.4
C4 N9 C1' C8 181.1 179.8
C1' N9 C4 N3 358.2 0.7
C1' N9 C4 C5 177.9 179.8
C1' N9 C8 N7 182.4 180.0
C1' N9 C8 H8 2.4 0.1
C4' C3' C2' C1' 38.8 339.0
O4' C1' C2' N9 238.6 241.3
O4' C1' C2' H1' 121.8 118.5
N9 C1' C2' H1' 243.2 237.1
C2' C1' N9 C4 90.0 94.1
C2' C1' N9 C8 268.8 274.3
O2' C2' C1' C3' 118.1 118.2
O2' C2' C1' H2' 241.0 236.5
C1' C2' O2' HO2 180.0 179.9
C3' C2' C1' H2' 122.9 118.3
C1' C2' C3' O3' 157.4 98.0
C1' C2' C3' H3' 276.1 220.5
O4' C1' H1' N9 119.4 122.9
O4' C1' H1' C2' 242.0 246.0
N9 C1' H1' C2' 122.6 123.1
H1' C1' N9 C4 331.7 331.2
H1' C1' N9 C8 150.6 151.4
H1' C1' C2' O2' 333.4 36.8
H1' C1' C2' C3' 215.4 278.6
H1' C1' C2' H2' 92.4 160.3
C4 N9 C1' C2' 90.0 94.1
C4 N9 C1' H1' 331.7 331.2
C1' N9 C4 C8 179.1 180.2
C4 N9 C8 N7 1.4 0.2
C4 N9 C8 H8 181.4 180.3
N3 C4 N9 C5 180.4 180.9
N9 C4 N3 C2 178.9 179.6
N9 C4 C5 C6 180.6 180.1
N9 C4 C5 N7 0.7 0.4
C8 N9 C1' C2' 268.8 274.3
C8 N9 C1' H1' 150.6 151.4
C1' N9 C8 C4 181.0 179.8
C8 N9 C4 N3 179.1 180.5
C8 N9 C4 C5 358.8 359.6
C5 N7 C8 N9 359.0 0.1
N7 C8 N9 H8 180.0 179.9
N3 C4 N9 C8 179.1 180.5
N9 C4 N3 C5 179.6 179.0
N3 C4 C5 C6 0.3 359.4
N3 C4 C5 N7 180.3 179.7
C4 N3 C2 N1 0.4 359.8
C4 N3 C2 H2 180.4 179.8
C5 C4 N9 C8 358.8 359.6
N9 C4 C5 N3 180.4 180.7
C5 C4 N3 C2 359.4 0.5
N1 C6 C5 C4 0.4 0.3
N6 C6 C5 C4 180.8 180.3
C6 C5 C4 N7 180.0 179.7
C4 C5 N7 C8 0.2 359.7
C2 N3 C4 C5 359.4 0.5
N1 C2 N3 H2 180.0 180.0
N3 C2 N1 C6 0.2 359.9
N3 C2 N1 H2 180.0 180.0
C2 N1 C6 N6 179.0 180.0
C2 N1 C6 C5 359.4 360.0
N3 C2 H2 N1 180.0 180.0
H2 C2 N1 C6 180.2 179.9
C4 C5 C6 N1 0.4 0.3
C6 N1 C2 H2 180.2 179.9
N6 C6 N1 C5 179.6 180.0
N1 C6 N6 HN61 180.0 0.1
N1 C6 N6 HN62 54.7 180.0
N1 C6 C5 N7 180.3 179.9
C4 C5 C6 N6 180.8 180.3
N1 C6 N6 C5 180.4 180.0
N6 C6 C5 N7 0.7 359.9
HN61 N6 C6 HN62 125.2 180.0
C4 C5 C6 N7 180.1 180.4
N1 C6 C5 N6 179.6 180.0
C5 C6 N6 HN61 359.6 180.1
C5 C6 N6 HN62 234.3 0.0
C6 C5 N7 C8 180.2 180.0
HN61 N6 C6 C5 359.6 180.1
C6 N6 HN61 HN62 234.8 180.0
HN62 N6 C6 C5 234.3 0.0
C6 N6 HN62 HN61 130.5 180.0
N9 C8 N7 C5 359.0 0.1
C4 C5 N7 C6 179.9 179.6
C5 N7 C8 H8 179.0 180.0
N9 C8 N7 H8 180.0 180.1
N9 C8 H8 N7 180.0 179.9
C4' C3' C2' O2' 282.3 220.8
O2' C2' C1' H1' 333.4 36.8
C1' C2' O2' C3' 248.7 247.3
C1' C2' O2' H2' 124.9 123.6
C3' C2' O2' H2' 236.2 236.3
O2' C2' C3' O3' 40.9 339.8
O2' C2' C3' H3' 159.6 102.3
C2' C3' C4' H4' 83.3 117.6
C4' C3' C2' O3' 241.4 241.0
C4' C3' C2' H3' 122.7 118.5
C3' C2' C1' H1' 215.4 278.6
C1' C2' C3' O2' 116.5 118.2
C1' C2' C3' H2' 235.7 241.8
O2' C2' C3' H2' 119.2 123.6
C3' C2' O2' HO2 291.3 292.6
O3' C3' C2' H3' 241.3 237.5
C2' C3' O3' HO3 67.6 61.4
H2' C2' C1' H1' 92.4 160.3
C1' C2' H2' O2' 238.8 236.4
C1' C2' H2' C3' 116.2 112.8
O2' C2' H2' C3' 237.3 236.4
H2' C2' O2' HO2 55.1 56.3
H2' C2' C3' O3' 281.7 216.2
H2' C2' C3' H3' 40.4 338.7
HO2 O2' C2' C3' 291.3 292.6
HO2 O2' C2' H2' 55.1 56.3
O3' C3' C4' H4' 325.8 358.8
C4' C3' O3' C2' 112.3 114.8
C4' C3' O3' H3' 236.6 237.3
O3' C3' C2' H2' 281.7 216.2
C2' C3' O3' H3' 124.3 122.5
H3' C3' C4' H4' 207.0 236.2
C4' C3' H3' C2' 243.7 245.4
C4' C3' H3' O3' 122.4 122.9
H3' C3' C2' H2' 40.4 338.7
C2' C3' H3' O3' 238.7 237.5
H3' C3' O3' HO3 303.3 298.9
HO3 O3' C3' H3' 303.3 298.9