PDB Chemical Component QQX

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for QQX

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
OP3 P 1.538 1.611
S1P P 1.919 1.863
O5' C5' 1.391 1.429
C5' C4' 1.495 1.531
C4' O4' 1.387 1.437
C4' C3' 1.463 1.543
O4' C1' 1.407 1.444
C3' O3' 1.353 1.448
C3' C2' 1.492 1.549
O3' P 1.517 1.633
C2' O2' 1.376 1.432
C2' C1' 1.482 1.546
O2' P 1.544 1.628
C1' N9 1.448 1.465
N9 C8 1.403 1.362
N9 C4 1.403 1.372
C8 N7 1.361 1.301
N7 C5 1.407 1.355
C5 C6 1.421 1.405
C5 C4 1.449 1.405
N3 C4 1.341 1.329
C6 N6 1.429 1.384
C6 N1 1.348 1.330
N1 C2 1.321 1.320
C2 N3 1.319 1.317
OP3 HP3 0.950 0.966
O5' H5' 0.950 0.967
C5' H5'1 1.100 1.090
C5' H5'2 1.100 1.090
C4' H4' 1.100 1.090
C3' H3' 1.100 1.090
C1' H1' 1.100 1.090
C2' H2' 1.100 1.090
C8 H8 1.080 1.081
N6 H61N 1.000 0.970
N6 H62N 1.000 0.970
C2 H2 1.080 1.080

Bond Angles for QQX

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
OP3 P S1P 107.7 110.8
OP3 P O3' 111.5 110.9
OP3 P O2' 113.2 110.9
P OP3 HP3 109.5 114.0
S1P P O3' 108.2 110.9
S1P P O2' 114.8 111.0
O5' C5' C4' 112.2 109.5
C5' O5' H5' 109.5 114.0
O5' C5' H5'1 108.8 109.4
O5' C5' H5'2 108.8 109.5
C5' C4' O4' 110.4 109.8
C5' C4' C3' 113.1 109.8
C4' C5' H5'1 108.8 109.5
C4' C5' H5'2 108.8 109.5
C5' C4' H4' 108.4 109.8
O4' C4' C3' 106.2 107.4
C4' O4' C1' 110.6 107.0
O4' C4' H4' 109.9 109.9
C4' C3' O3' 111.0 107.7
C4' C3' C2' 105.8 103.9
C3' C4' H4' 108.8 110.0
C4' C3' H3' 110.5 112.4
O4' C1' C2' 107.5 103.5
O4' C1' N9 107.3 110.6
O4' C1' H1' 109.3 110.6
O3' C3' C2' 106.7 107.3
C3' O3' P 109.2 101.8
O3' C3' H3' 112.4 112.2
C3' C2' O2' 105.4 110.3
C3' C2' C1' 101.3 102.4
C2' C3' H3' 110.2 112.8
C3' C2' H2' 110.1 111.2
O3' P O2' 101.3 102.1
O2' C2' C1' 117.0 109.8
C2' O2' P 107.4 105.1
O2' C2' H2' 111.9 111.2
C2' C1' N9 115.7 110.6
C2' C1' H1' 108.3 110.6
C1' C2' H2' 110.3 111.7
C1' N9 C8 127.2 126.3
C1' N9 C4 127.9 126.3
N9 C1' H1' 108.7 110.7
C8 N9 C4 104.9 107.4
N9 C8 N7 113.2 110.0
N9 C8 H8 123.4 125.0
N9 C4 C5 108.3 106.0
C8 N7 C5 106.4 109.4
N7 C8 H8 123.4 124.9
N7 C5 C6 133.9 134.7
N7 C5 C4 107.3 107.2
C6 C5 C4 118.7 118.2
C5 C6 N6 121.1 120.8
C5 C6 N1 116.0 118.4
C2 N3 C4 121.3 120.6
N6 C6 N1 122.9 120.8
C6 N6 H61N 109.5 120.0
C6 N6 H62N 109.5 120.0
C6 N1 C2 124.0 121.2
N1 C2 N3 121.6 122.4
N1 C2 H2 119.2 118.8
N3 C2 H2 119.2 118.8
H5'1 C5' H5'2 109.5 109.5
H61N N6 H62N 109.5 120.0

Torsion Angles for QQX

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
S1P P OP3 O3' 118.6 123.6
S1P P OP3 O2' 232.0 236.3
C3' O3' P OP3 232.3 207.4
O3' P OP3 O2' 113.4 112.7
C2' O2' P OP3 105.6 139.0
OP3 P S1P O3' 239.4 236.4
OP3 P S1P O2' 127.1 123.6
S1P P OP3 HP3 360.0 60.0
C3' O3' P S1P 114.0 83.8
O3' P S1P O2' 247.7 247.2
C2' O2' P S1P 229.9 262.6
O5' C5' C4' O4' 307.4 66.5
O5' C5' C4' C3' 66.2 184.3
C4' C5' O5' H5'1 239.6 240.0
C4' C5' O5' H5'2 120.4 120.0
O5' C5' C4' H4' 186.9 305.4
H5'1 C5' O5' H5'2 240.8 240.0
C4' C5' O5' H5' 180.0 180.0
O5' C5' C4' H5'1 120.4 120.0
O5' C5' C4' H5'2 239.6 240.0
O4' C4' C5' C3' 241.2 242.1
C5' C4' O4' C1' 114.8 145.9
O4' C4' C5' H4' 120.4 121.0
C5' C4' C3' O3' 147.1 124.8
C5' C4' C3' C2' 262.5 238.4
C3' C4' C5' H4' 239.2 238.9
C5' C4' C3' H3' 21.7 0.7
H5'1 C5' C4' H5'2 119.2 120.0
C5' C4' O4' C3' 122.9 119.4
O4' C4' C5' H5'1 186.9 306.5
O4' C4' C5' H5'2 67.7 186.4
C5' C4' O4' H4' 240.5 239.0
O4' C4' C3' O3' 268.3 244.2
O4' C4' C3' C2' 23.7 357.8
C3' C4' O4' H4' 117.6 119.6
O4' C4' C3' H3' 142.9 120.1
C4' O4' C1' C2' 349.1 320.1
C4' O4' C1' N9 224.1 201.6
C4' O4' C1' H1' 106.4 78.6
C5' C4' C3' O4' 238.8 240.6
C3' C4' C5' H5'1 305.8 64.3
C3' C4' C5' H5'2 186.6 304.3
C5' C4' C3' H4' 120.5 121.0
C3' C4' O4' C1' 351.9 26.5
O4' C4' C3' H4' 241.7 240.4
O3' C3' C4' C2' 244.6 246.4
C4' C3' O3' P 138.6 146.7
O3' C3' C4' H3' 125.4 124.1
C4' C3' C2' O2' 208.7 222.5
C4' C3' C2' C1' 331.1 339.3
C2' C3' C4' H3' 240.7 237.7
C4' C3' C2' H2' 87.9 98.7
C1' O4' C4' C3' 351.9 26.5
C1' O4' C4' H4' 234.4 266.9
C3' C2' C1' O4' 24.4 36.9
O2' C2' C1' O4' 138.3 154.0
C2' C1' O4' N9 125.0 118.5
C2' C1' O4' H1' 242.7 241.5
O4' C1' C2' H2' 267.7 277.9
O4' C1' N9 C8 67.7 23.5
O4' C1' N9 C4 249.6 203.3
N9 C1' O4' H1' 117.7 123.0
OP3 P O3' C3' 232.3 207.4
S1P P O3' C3' 114.0 83.8
C4' C3' O3' C2' 114.9 111.4
O3' C3' C4' H4' 26.6 3.8
C4' C3' O3' H3' 235.7 235.8
O3' C3' C2' O2' 327.0 336.4
O3' C3' C2' C1' 89.4 93.2
C2' C3' O3' H3' 120.8 124.4
O3' C3' C2' H2' 206.1 212.6
C3' O3' P O2' 353.0 325.5
C4' C3' C2' O3' 241.7 246.1
C2' C3' C4' H4' 142.0 117.4
C4' C3' C2' H3' 119.5 122.0
O4' C1' C2' C3' 24.4 36.9
C2' C3' O3' P 23.8 35.3
O3' C3' C2' H3' 237.8 236.0
O2' C2' C3' C1' 237.6 243.2
C3' C2' O2' P 27.8 359.7
O2' C2' C3' H2' 120.9 123.8
C3' C2' C1' N9 144.1 155.4
C3' C2' C1' H1' 266.4 278.4
C1' C2' C3' H2' 243.2 240.6
OP3 P O3' S1P 118.2 123.5
OP3 P O3' O2' 239.3 241.8
O3' P OP3 HP3 241.4 296.4
S1P P O3' O2' 121.1 118.3
P O3' C3' C2' 23.8 35.3
P O3' C3' H3' 263.0 270.9
C2' O2' P O3' 346.2 20.8
OP3 P O2' C2' 105.6 139.0
S1P P O2' C2' 229.9 262.6
O4' C1' C2' O2' 138.3 154.0
C3' C2' O2' C1' 111.7 112.1
O2' C2' C3' H3' 89.2 100.4
C3' C2' O2' H2' 240.3 236.2
O3' P O2' C2' 346.2 20.8
O2' C2' C1' N9 258.1 272.5
O2' C2' C1' H1' 20.4 35.5
C1' C2' O2' H2' 128.6 124.2
O4' C1' C2' N9 240.2 241.5
O4' C1' C2' H1' 117.9 118.5
C3' C2' C1' O2' 246.0 242.9
C1' C2' C3' H3' 211.6 217.2
C3' C2' C1' H2' 116.7 119.0
C1' C2' O2' P 276.1 247.6
O2' C2' C1' H2' 230.6 236.2
C2' C1' N9 C8 307.8 269.5
C2' C1' N9 C4 129.7 89.2
N9 C1' C2' H1' 237.7 237.0
OP3 P O2' S1P 235.8 236.5
OP3 P O2' O3' 119.4 118.2
O2' P OP3 HP3 128.0 183.7
S1P P O2' O3' 243.7 241.7
P O2' C2' C1' 276.1 247.6
P O2' C2' H2' 147.5 123.4
O4' C1' N9 C2' 119.9 114.1
O4' C1' N9 H1' 241.9 237.0
C2' C1' N9 H1' 122.0 123.0
N9 C1' C2' H2' 27.5 36.3
C8 N9 C1' C4 178.1 180.2
C1' N9 C8 N7 180.7 180.0
C1' N9 C8 H8 0.7 360.0
C1' N9 C4 C5 179.3 179.9
C1' N9 C8 C4 181.6 179.8
C8 N9 C1' H1' 185.7 146.5
C8 N9 C4 C5 0.9 359.7
N9 C8 N7 C5 0.4 0.0
N7 C8 N9 H8 180.0 180.0
C1' N9 C4 C8 178.4 180.2
C4 N9 C1' H1' 7.7 326.3
C4 N9 C8 N7 359.1 0.2
C4 N9 C8 H8 179.1 180.2
N7 C5 C4 N9 359.2 0.3
C6 C5 C4 N9 179.9 180.1
C2 N3 C4 N9 180.1 179.7
N7 C8 N9 C4 359.1 0.2
N9 C8 N7 H8 180.0 180.0
C8 N7 C5 C6 179.4 180.0
C8 N7 C5 C4 0.2 359.8
N9 C4 C5 N7 359.2 0.3
C5 N7 C8 H8 180.4 180.0
C6 C5 N7 C4 179.2 180.2
N7 C5 C6 N6 0.3 0.0
N7 C5 C6 N1 180.5 179.9
N9 C4 C5 C6 179.9 180.1
N7 C5 C6 C4 180.9 179.8
N6 C6 C5 N1 179.8 180.1
C5 C6 N6 H61N 180.2 359.9
C5 C6 N6 H62N 300.2 179.9
C5 C6 N1 C2 0.3 0.1
N7 C5 C4 C6 179.3 180.2
C4 C5 C6 N6 179.4 180.3
C4 C5 C6 N1 359.6 0.2
C2 N3 C4 C5 359.2 0.5
N1 C2 N3 C4 0.8 359.7
C4 N3 C2 H2 180.7 179.7
N6 C6 C5 C4 179.4 180.3
C5 C6 N6 N1 180.2 179.9
N6 C6 N1 C2 180.5 180.0
H61N N6 C6 H62N 240.0 179.9
N1 C6 C5 C4 359.6 0.2
C5 C6 N1 N6 179.8 180.1
N1 C6 N6 H61N 360.0 180.0
N1 C6 N6 H62N 120.0 0.0
C6 N1 C2 N3 359.5 0.0
C6 N1 C2 H2 179.5 180.0
N3 C2 N1 H2 180.0 180.0
N1 C2 N3 H2 180.0 180.0
HP3 OP3 P S1P 360.0 60.0
HP3 OP3 P O3' 241.4 296.4
HP3 OP3 P O2' 128.0 183.7
H5' O5' C5' C4' 180.0 180.0
H5' O5' C5' H5'1 300.4 300.0
H5' O5' C5' H5'2 59.6 60.0
O5' C5' H5'1 C4' 237.5 240.0
H5'1 C5' O5' H5' 300.4 300.0
O5' C5' H5'1 H5'2 118.8 119.9
H5'1 C5' C4' O4' 186.9 306.5
H5'1 C5' C4' C3' 305.8 64.3
C4' C5' H5'1 H5'2 241.3 240.0
H5'1 C5' C4' H4' 66.5 185.4
O5' C5' H5'2 C4' 122.5 120.0
H5'2 C5' O5' H5' 59.6 60.0
O5' C5' H5'2 H5'1 241.2 240.1
H5'2 C5' C4' O4' 67.7 186.4
H5'2 C5' C4' C3' 186.6 304.3
C4' C5' H5'2 H5'1 118.7 120.0
H5'2 C5' C4' H4' 307.3 65.4
C5' C4' H4' O4' 120.7 121.0
C5' C4' H4' C3' 236.7 239.0
H4' C4' C5' H5'1 66.5 185.4
H4' C4' C5' H5'2 307.3 65.4
O4' C4' H4' C3' 115.9 118.0
H4' C4' O4' C1' 234.4 266.9
H4' C4' C3' O3' 26.6 3.8
H4' C4' C3' C2' 142.0 117.4
H4' C4' C3' H3' 261.2 239.7
C4' C3' H3' O3' 124.6 121.6
C4' C3' H3' C2' 243.4 242.9
H3' C3' C4' H4' 261.2 239.7
O3' C3' H3' C2' 118.8 121.3
H3' C3' O3' P 263.0 270.9
H3' C3' C2' O2' 89.2 100.4
H3' C3' C2' C1' 211.6 217.2
H3' C3' C2' H2' 328.3 336.7
O4' C1' H1' C2' 243.2 245.9
O4' C1' H1' N9 116.8 123.0
C2' C1' H1' N9 233.6 237.0
H1' C1' C2' H2' 149.7 159.4
H1' C1' N9 C8 185.7 146.5
H1' C1' N9 C4 7.7 326.3
C3' C2' H2' O2' 116.9 123.3
C3' C2' H2' C1' 249.0 246.3
H2' C2' C3' H3' 328.3 336.7
O2' C2' H2' C1' 132.1 123.1
H2' C2' O2' P 147.5 123.4
H2' C2' C1' N9 27.5 36.3
H2' C2' C1' H1' 149.7 159.4
H8 C8 N9 C4 179.1 180.2
N9 C8 H8 N7 180.0 180.0
H8 C8 N7 C5 180.4 180.0
H61N N6 C6 N1 360.0 180.0
C6 N6 H61N H62N 120.0 180.1
H62N N6 C6 N1 120.0 0.0
C6 N6 H62N H61N 239.9 179.9
H2 C2 N3 C4 180.7 179.7
N1 C2 H2 N3 180.0 180.0