Atom Nomenclature for QN7

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for QN7

Atom Name (V3) Atom Name (V2)
C1 C1
O2 O2
C3 C3
C4 C4
C5 C5
C6 C6
C7 C7
C8 C8
F9 F9
C10 C10
C11 C11
C12 C12
C13 C13
C14 C14
C15 C15
C16 C16
C17 C17
N18 N18
C19 C19
C20 C20
C21 C21
N22 N22
C23 C23
N24 N24
N25 N25
F26 F26
F27 F27
C28 C28
C29 C29
C30 C30
N31 N31
C32 C32
C33 C33
H11C H11C
H12C H12C
H13C H13C
H4 H4
H5 H5
H6 H6
H11 H11
H15 H15
H12 H12
H13 H13
H191 H191
H192 H192
H211 H211
H212 H212
H251 H251
H252 H252
H29 H29
H33 H33
H30 H30
H32 H32