PDB Chemical Component QKA
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for QKA
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N4 |
C4 |
1.359 |
1.377 |
| C4 |
S |
1.749 |
1.761 |
| C4 |
N2 |
1.323 |
1.276 |
| C17 |
C14 |
1.506 |
1.530 |
| S |
C10 |
1.812 |
1.812 |
| N2 |
C16 |
1.465 |
1.444 |
| C |
C1 |
1.383 |
1.387 |
| C |
C2 |
1.396 |
1.386 |
| C1 |
N |
1.383 |
1.322 |
| C14 |
C15 |
1.509 |
1.530 |
| C14 |
C7 |
1.539 |
1.530 |
| C2 |
N1 |
1.350 |
1.324 |
| N |
C3 |
1.354 |
1.325 |
| C3 |
N1 |
1.391 |
1.325 |
| C3 |
N3 |
1.363 |
1.384 |
| C16 |
C9 |
1.554 |
1.551 |
| C16 |
C13 |
1.548 |
1.534 |
| C16 |
C12 |
1.529 |
1.530 |
| C10 |
C13 |
1.525 |
1.517 |
| C8 |
N3 |
1.470 |
1.481 |
| C8 |
C13 |
1.552 |
1.542 |
| N3 |
C9 |
1.445 |
1.475 |
| C11 |
C6 |
1.545 |
1.529 |
| C11 |
C12 |
1.531 |
1.530 |
| C11 |
C5 |
1.469 |
1.507 |
| C15 |
C7 |
1.497 |
1.530 |
| C15 |
C18 |
1.522 |
1.530 |
| C6 |
C12 |
1.518 |
1.529 |
| N5 |
C5 |
1.361 |
1.348 |
| N5 |
C18 |
1.460 |
1.464 |
| C5 |
O |
1.235 |
1.212 |
| C7 |
H1 |
1.100 |
1.090 |
| C7 |
H2 |
1.100 |
1.090 |
| C6 |
H3 |
1.100 |
1.091 |
| C6 |
H4 |
1.100 |
1.090 |
| C1 |
H5 |
1.080 |
1.080 |
| C2 |
H6 |
1.079 |
1.080 |
| N5 |
H7 |
1.000 |
0.970 |
| C18 |
H8 |
1.100 |
1.091 |
| C18 |
H9 |
1.100 |
1.090 |
| C15 |
H10 |
1.100 |
1.090 |
| C14 |
H11 |
1.100 |
1.090 |
| C17 |
H12 |
1.100 |
1.090 |
| C17 |
H13 |
1.100 |
1.090 |
| C17 |
H14 |
1.100 |
1.089 |
| C11 |
H15 |
1.099 |
1.090 |
| C12 |
H16 |
1.100 |
1.089 |
| C13 |
H17 |
1.100 |
1.090 |
| C10 |
H18 |
1.100 |
1.090 |
| C10 |
H19 |
1.100 |
1.090 |
| N4 |
H20 |
1.000 |
0.970 |
| N4 |
H21 |
1.000 |
0.970 |
| C9 |
H22 |
1.100 |
1.090 |
| C9 |
H23 |
1.100 |
1.090 |
| C8 |
H24 |
1.100 |
1.090 |
| C8 |
H25 |
1.100 |
1.090 |
| C |
H26 |
1.081 |
1.080 |
Bond Angles for QKA
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N2 |
C4 |
S |
126.5 |
122.8 |
| C4 |
S |
C10 |
101.8 |
98.9 |
| C4 |
N2 |
C16 |
126.4 |
130.6 |
| C17 |
C14 |
H11 |
116.0 |
115.6 |
| S |
C10 |
H18 |
108.0 |
109.5 |
| S |
C10 |
H19 |
108.0 |
109.5 |
| N2 |
C16 |
C9 |
109.1 |
108.1 |
| N2 |
C16 |
C13 |
114.4 |
114.5 |
| C |
C1 |
H5 |
119.2 |
120.4 |
| C |
C2 |
H6 |
119.4 |
120.4 |
| C1 |
N |
C3 |
114.2 |
120.8 |
| N |
C1 |
H5 |
119.2 |
120.4 |
| C14 |
C15 |
H10 |
116.1 |
117.5 |
| C14 |
C7 |
H1 |
120.1 |
117.5 |
| C14 |
C7 |
H2 |
120.1 |
117.5 |
| C3 |
N3 |
C9 |
122.9 |
111.0 |
| C13 |
C16 |
C9 |
102.4 |
102.5 |
| C16 |
C9 |
H22 |
111.5 |
109.9 |
| C16 |
C9 |
H23 |
111.5 |
109.9 |
| C16 |
C13 |
H17 |
108.4 |
109.8 |
| C16 |
C12 |
H16 |
114.6 |
115.6 |
| C10 |
C13 |
H17 |
108.7 |
110.1 |
| C8 |
C13 |
H17 |
108.3 |
109.8 |
| N3 |
C9 |
H22 |
111.5 |
110.0 |
| N3 |
C9 |
H23 |
111.5 |
110.1 |
| C11 |
C6 |
C12 |
60.0 |
60.0 |
| C11 |
C6 |
H3 |
120.0 |
117.5 |
| C11 |
C6 |
H4 |
120.0 |
117.6 |
| C6 |
C12 |
C11 |
60.9 |
60.0 |
| C12 |
C11 |
H15 |
115.8 |
117.5 |
| C11 |
C12 |
H16 |
114.5 |
117.5 |
| C15 |
C7 |
H1 |
120.1 |
117.6 |
| C15 |
C7 |
H2 |
120.1 |
117.5 |
| C15 |
C18 |
H8 |
109.8 |
109.5 |
| C15 |
C18 |
H9 |
109.7 |
109.5 |
| C12 |
C6 |
H3 |
120.0 |
117.5 |
| C12 |
C6 |
H4 |
120.0 |
117.5 |
| C6 |
C12 |
H16 |
114.7 |
117.5 |
| C18 |
N5 |
H7 |
119.8 |
120.0 |
| N5 |
C18 |
H8 |
109.7 |
109.5 |
| N5 |
C18 |
H9 |
109.8 |
109.5 |
| H1 |
C7 |
H2 |
109.4 |
115.5 |
| H3 |
C6 |
H4 |
109.5 |
115.5 |
| H8 |
C18 |
H9 |
109.4 |
109.4 |
| H12 |
C17 |
H13 |
109.5 |
109.5 |
| H12 |
C17 |
H14 |
109.5 |
109.5 |
| H13 |
C17 |
H14 |
109.5 |
109.4 |
| H18 |
C10 |
H19 |
109.4 |
109.5 |
| H20 |
N4 |
H21 |
120.0 |
120.1 |
| H22 |
C9 |
H23 |
109.5 |
109.9 |
| H24 |
C8 |
H25 |
109.5 |
110.4 |
Torsion Angles for QKA
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| S |
C4 |
N2 |
C16 |
4.7 |
359.3 |
| C4 |
S |
C10 |
H18 |
151.5 |
291.3 |
| C4 |
S |
C10 |
H19 |
269.7 |
171.3 |
| N2 |
C4 |
S |
C10 |
353.1 |
338.4 |
| C4 |
N2 |
C16 |
C9 |
221.7 |
241.7 |
| C4 |
N2 |
C16 |
C13 |
335.7 |
355.3 |
| C17 |
C14 |
C15 |
H10 |
0.9 |
0.0 |
| C17 |
C14 |
C7 |
H1 |
0.6 |
145.0 |
| C17 |
C14 |
C7 |
H2 |
141.8 |
0.0 |
| S |
C10 |
C13 |
H17 |
185.7 |
172.6 |
| H18 |
C10 |
S |
H19 |
241.8 |
120.0 |
| C16 |
N2 |
C4 |
S |
4.7 |
359.3 |
| C13 |
C16 |
N2 |
C9 |
114.0 |
113.5 |
| N2 |
C16 |
C9 |
H22 |
203.0 |
217.7 |
| N2 |
C16 |
C9 |
H23 |
325.7 |
338.8 |
| N2 |
C16 |
C13 |
H17 |
170.0 |
162.7 |
| N2 |
C16 |
C12 |
H16 |
190.1 |
200.0 |
| N |
C1 |
C |
H5 |
180.0 |
179.7 |
| C2 |
C |
C1 |
H5 |
176.7 |
180.3 |
| C |
C1 |
N |
H5 |
180.0 |
180.3 |
| C15 |
C14 |
C7 |
H1 |
109.4 |
252.4 |
| C15 |
C14 |
C7 |
H2 |
250.6 |
107.5 |
| C14 |
C15 |
C7 |
H1 |
250.6 |
107.5 |
| C14 |
C15 |
C7 |
H2 |
109.4 |
252.5 |
| C14 |
C15 |
C18 |
H8 |
201.7 |
55.0 |
| C14 |
C15 |
C18 |
H9 |
322.0 |
295.0 |
| C15 |
C7 |
C14 |
H1 |
250.6 |
107.6 |
| C15 |
C7 |
C14 |
H2 |
109.4 |
252.5 |
| H1 |
C7 |
C14 |
H2 |
218.8 |
144.9 |
| C3 |
N |
C1 |
H5 |
181.9 |
179.9 |
| C1 |
N |
C3 |
N1 |
1.7 |
0.1 |
| C1 |
N |
C3 |
N3 |
185.7 |
179.4 |
| C3 |
N3 |
C9 |
H22 |
85.3 |
118.3 |
| C3 |
N3 |
C9 |
H23 |
322.5 |
357.0 |
| N2 |
C16 |
C9 |
C13 |
121.6 |
121.3 |
| C3 |
N3 |
C9 |
C16 |
203.9 |
237.6 |
| C9 |
C16 |
C13 |
H17 |
288.0 |
279.4 |
| C9 |
C16 |
C12 |
H16 |
70.6 |
80.4 |
| N3 |
C9 |
C16 |
H22 |
241.4 |
240.6 |
| N3 |
C9 |
C16 |
H23 |
118.6 |
119.5 |
| H22 |
C9 |
C16 |
H23 |
237.3 |
238.9 |
| N2 |
C16 |
C13 |
C9 |
242.1 |
243.2 |
| C13 |
C16 |
C9 |
H22 |
81.4 |
96.4 |
| C13 |
C16 |
C9 |
H23 |
204.1 |
217.5 |
| C13 |
C16 |
C12 |
H16 |
319.0 |
327.7 |
| C10 |
C13 |
C16 |
H17 |
238.8 |
236.8 |
| C8 |
C13 |
C16 |
H17 |
114.0 |
116.8 |
| C4 |
N2 |
C16 |
C12 |
103.0 |
120.6 |
| C16 |
C12 |
C11 |
H15 |
5.9 |
360.0 |
| C11 |
C12 |
C16 |
H16 |
142.6 |
145.7 |
| C16 |
C12 |
C6 |
H3 |
141.0 |
145.0 |
| C16 |
C12 |
C6 |
H4 |
359.9 |
0.1 |
| C6 |
C12 |
C16 |
H16 |
215.0 |
214.3 |
| C4 |
S |
C10 |
C13 |
30.6 |
51.3 |
| C10 |
C13 |
C16 |
C9 |
166.8 |
156.2 |
| C16 |
C13 |
C10 |
H17 |
121.0 |
123.1 |
| C8 |
C13 |
C10 |
H17 |
238.2 |
237.9 |
| N3 |
C8 |
C13 |
H17 |
83.9 |
79.6 |
| C8 |
N3 |
C9 |
H22 |
260.5 |
240.5 |
| C8 |
N3 |
C9 |
H23 |
137.7 |
119.3 |
| C16 |
C13 |
C8 |
H17 |
246.0 |
243.2 |
| C10 |
C13 |
C8 |
H17 |
122.0 |
122.2 |
| C16 |
C9 |
N3 |
H22 |
118.6 |
119.3 |
| C16 |
C9 |
N3 |
H23 |
241.4 |
240.6 |
| H22 |
C9 |
N3 |
H23 |
122.8 |
121.3 |
| C6 |
C12 |
C11 |
C6 |
-0.0 |
-0.0 |
| C12 |
C6 |
C11 |
H3 |
250.6 |
252.5 |
| C12 |
C6 |
C11 |
H4 |
109.5 |
107.5 |
| C11 |
C6 |
C12 |
H16 |
105.5 |
107.5 |
| H3 |
C6 |
C11 |
H4 |
218.9 |
215.0 |
| C16 |
C12 |
C11 |
H16 |
217.3 |
215.0 |
| C12 |
C11 |
C6 |
C12 |
-0.0 |
360.0 |
| C12 |
C11 |
C6 |
H3 |
109.4 |
107.5 |
| C12 |
C11 |
C6 |
H4 |
250.5 |
252.5 |
| C11 |
C12 |
C6 |
H3 |
250.5 |
252.5 |
| C11 |
C12 |
C6 |
H4 |
109.5 |
107.6 |
| C6 |
C12 |
C11 |
H16 |
105.8 |
107.5 |
| C5 |
C11 |
C6 |
C12 |
250.7 |
252.5 |
| C5 |
C11 |
C6 |
H3 |
0.1 |
0.0 |
| C5 |
C11 |
C6 |
H4 |
141.2 |
145.0 |
| C6 |
C12 |
C11 |
C5 |
106.3 |
107.5 |
| C14 |
C7 |
C15 |
H1 |
109.4 |
252.5 |
| C14 |
C7 |
C15 |
H2 |
250.6 |
107.5 |
| H1 |
C7 |
C15 |
H2 |
141.3 |
215.0 |
| C18 |
C15 |
C7 |
H1 |
141.7 |
360.0 |
| C18 |
C15 |
C7 |
H2 |
0.4 |
145.0 |
| C15 |
C18 |
N5 |
H7 |
9.4 |
0.1 |
| N5 |
C18 |
C15 |
H8 |
240.2 |
120.0 |
| N5 |
C18 |
C15 |
H9 |
119.9 |
240.0 |
| H8 |
C18 |
C15 |
H9 |
239.7 |
120.0 |
| C16 |
C12 |
C6 |
H16 |
145.0 |
145.1 |
| C11 |
C6 |
C12 |
H3 |
109.5 |
107.5 |
| C11 |
C6 |
C12 |
H4 |
250.5 |
252.4 |
| C6 |
C12 |
C11 |
H15 |
254.4 |
252.5 |
| C11 |
C12 |
C6 |
H16 |
254.5 |
252.5 |
| H3 |
C6 |
C12 |
H4 |
141.1 |
144.9 |
| C15 |
C18 |
N5 |
H8 |
119.9 |
240.0 |
| C15 |
C18 |
N5 |
H9 |
240.2 |
120.1 |
| H8 |
C18 |
N5 |
H9 |
120.3 |
240.0 |
| C14 |
C7 |
H1 |
H2 |
144.9 |
214.4 |
| C15 |
C7 |
H1 |
H2 |
215.0 |
145.7 |
| C14 |
C7 |
H2 |
H1 |
215.1 |
145.6 |
| C15 |
C7 |
H2 |
H1 |
145.0 |
214.3 |
| C11 |
C6 |
H3 |
C12 |
289.5 |
291.3 |
| C11 |
C6 |
H3 |
H4 |
144.8 |
145.7 |
| H3 |
C6 |
C12 |
C11 |
250.5 |
252.5 |
| C12 |
C6 |
H3 |
H4 |
215.2 |
214.3 |
| H3 |
C6 |
C12 |
H16 |
356.0 |
360.0 |
| C11 |
C6 |
H4 |
C12 |
70.5 |
68.7 |
| C11 |
C6 |
H4 |
H3 |
215.2 |
214.3 |
| H4 |
C6 |
C12 |
C11 |
109.5 |
107.6 |
| C12 |
C6 |
H4 |
H3 |
144.8 |
145.7 |
| H4 |
C6 |
C12 |
H16 |
214.9 |
215.0 |
| H5 |
C1 |
N |
C3 |
181.9 |
179.9 |
| H7 |
N5 |
C18 |
H8 |
249.6 |
120.0 |
| H7 |
N5 |
C18 |
H9 |
129.3 |
240.0 |
| C15 |
C18 |
H8 |
H9 |
120.5 |
240.0 |
| H8 |
C18 |
N5 |
H7 |
249.6 |
120.0 |
| N5 |
C18 |
H8 |
H9 |
239.5 |
120.0 |
| C15 |
C18 |
H9 |
H8 |
239.5 |
120.0 |
| H9 |
C18 |
N5 |
H7 |
129.3 |
240.0 |
| N5 |
C18 |
H9 |
H8 |
120.5 |
240.0 |
| H10 |
C15 |
C7 |
H1 |
357.5 |
215.0 |
| H10 |
C15 |
C7 |
H2 |
216.2 |
0.0 |
| H10 |
C15 |
C18 |
H8 |
56.9 |
269.3 |
| H10 |
C15 |
C18 |
H9 |
177.2 |
149.3 |
| H11 |
C14 |
C15 |
H10 |
147.5 |
145.1 |
| H11 |
C14 |
C7 |
H1 |
215.5 |
359.9 |
| H11 |
C14 |
C7 |
H2 |
356.8 |
215.0 |
| H12 |
C17 |
C14 |
H11 |
33.4 |
274.3 |
| H13 |
C17 |
H12 |
H14 |
120.0 |
120.0 |
| H13 |
C17 |
C14 |
H11 |
153.4 |
34.3 |
| H12 |
C17 |
H13 |
H14 |
240.0 |
239.9 |
| H14 |
C17 |
C14 |
H11 |
273.4 |
154.2 |
| H12 |
C17 |
H14 |
H13 |
120.0 |
120.0 |
| H15 |
C11 |
C6 |
C12 |
106.0 |
107.5 |
| H15 |
C11 |
C6 |
H3 |
215.5 |
215.0 |
| H15 |
C11 |
C6 |
H4 |
356.6 |
360.0 |
| H15 |
C11 |
C12 |
H16 |
148.6 |
145.0 |
| C6 |
C12 |
H16 |
C11 |
292.3 |
291.4 |
| H16 |
C12 |
C11 |
H15 |
148.6 |
145.0 |
| H16 |
C12 |
C6 |
H3 |
356.0 |
360.0 |
| H16 |
C12 |
C6 |
H4 |
214.9 |
215.0 |
| H17 |
C13 |
C16 |
C9 |
288.0 |
279.4 |
| S |
C10 |
H18 |
H19 |
117.3 |
239.9 |
| H18 |
C10 |
C13 |
H17 |
64.8 |
292.6 |
| S |
C10 |
H19 |
H18 |
242.7 |
120.0 |
| H19 |
C10 |
C13 |
H17 |
306.6 |
52.6 |
| C16 |
C9 |
H22 |
H23 |
123.9 |
121.1 |
| N3 |
C9 |
H22 |
H23 |
236.1 |
238.7 |
| C16 |
C9 |
H23 |
H22 |
236.1 |
238.9 |
| N3 |
C9 |
H23 |
H22 |
123.9 |
121.3 |
| H24 |
C8 |
C13 |
H17 |
325.1 |
198.4 |
| H25 |
C8 |
C13 |
H17 |
202.8 |
320.9 |
| H26 |
C |
C1 |
H5 |
356.7 |
0.3 |
| H26 |
C |
C2 |
H6 |
1.2 |
0.4 |