PDB Chemical Component QEM
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for QEM
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C21 |
C |
1.386 |
1.382 |
| C |
C16 |
1.414 |
1.383 |
| C |
H |
1.080 |
1.079 |
| C10 |
N |
1.445 |
1.469 |
| N |
C13 |
1.468 |
1.469 |
| N |
C11 |
1.446 |
1.469 |
| O |
C20 |
1.428 |
1.358 |
| O |
HO |
0.950 |
0.967 |
| C02 |
C01 |
1.421 |
1.382 |
| C01 |
C06 |
1.401 |
1.383 |
| C01 |
H01 |
1.080 |
1.080 |
| C15 |
O01 |
1.408 |
1.428 |
| O01 |
HO01 |
0.951 |
0.967 |
| C07 |
C02 |
1.526 |
1.508 |
| C02 |
C03 |
1.391 |
1.382 |
| C03 |
C04 |
1.408 |
1.383 |
| C03 |
H03 |
1.080 |
1.080 |
| C04 |
C05 |
1.412 |
1.382 |
| C04 |
H04 |
1.080 |
1.080 |
| C06 |
C05 |
1.382 |
1.382 |
| C05 |
H05 |
1.080 |
1.081 |
| C06 |
H06 |
1.080 |
1.080 |
| C07 |
C08 |
1.561 |
1.530 |
| C07 |
H07 |
1.100 |
1.090 |
| C07 |
H07A |
1.100 |
1.091 |
| C09 |
C08 |
1.436 |
1.531 |
| C08 |
C12 |
1.483 |
1.531 |
| C08 |
H08 |
1.100 |
1.091 |
| C09 |
C10 |
1.494 |
1.530 |
| C09 |
H09 |
1.100 |
1.089 |
| C09 |
H09A |
1.100 |
1.090 |
| C10 |
H10 |
1.100 |
1.090 |
| C10 |
H10A |
1.100 |
1.090 |
| C12 |
C11 |
1.494 |
1.530 |
| C11 |
H11 |
1.100 |
1.090 |
| C11 |
H11A |
1.100 |
1.090 |
| C12 |
H12 |
1.100 |
1.090 |
| C12 |
H12A |
1.100 |
1.090 |
| C14 |
C13 |
1.514 |
1.530 |
| C13 |
H13 |
1.100 |
1.090 |
| C13 |
H13A |
1.101 |
1.090 |
| C17 |
C14 |
1.534 |
1.530 |
| C14 |
C15 |
1.490 |
1.530 |
| C14 |
H14 |
1.100 |
1.090 |
| C16 |
C15 |
1.529 |
1.508 |
| C15 |
H15 |
1.100 |
1.090 |
| C16 |
C18 |
1.380 |
1.382 |
| C17 |
H17 |
1.100 |
1.089 |
| C17 |
H17A |
1.100 |
1.090 |
| C17 |
H17B |
1.100 |
1.090 |
| C19 |
C18 |
1.406 |
1.381 |
| C18 |
H18 |
1.080 |
1.081 |
| C20 |
C19 |
1.379 |
1.387 |
| C19 |
H19 |
1.080 |
1.080 |
| C21 |
C20 |
1.402 |
1.388 |
| C21 |
H21 |
1.080 |
1.080 |
Bond Angles for QEM
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C21 |
C |
H |
120.1 |
120.0 |
| C16 |
C |
H |
120.1 |
120.0 |
| C |
C16 |
C15 |
121.9 |
119.9 |
| C |
C16 |
C18 |
118.9 |
120.1 |
| C10 |
N |
C13 |
138.7 |
111.0 |
| C10 |
N |
C11 |
111.2 |
111.2 |
| C11 |
N |
C13 |
99.8 |
111.0 |
| N |
C13 |
H13 |
107.2 |
109.5 |
| N |
C13 |
H13A |
107.2 |
109.5 |
| N |
C11 |
H11 |
108.8 |
109.5 |
| N |
C11 |
H11A |
108.8 |
109.5 |
| C20 |
O |
HO |
109.5 |
114.0 |
| O |
C20 |
C19 |
118.9 |
120.1 |
| C02 |
C01 |
C06 |
119.8 |
120.0 |
| C02 |
C01 |
H01 |
120.1 |
120.0 |
| C06 |
C01 |
H01 |
120.1 |
120.0 |
| C01 |
C06 |
C05 |
119.2 |
120.0 |
| C01 |
C06 |
H06 |
120.4 |
119.9 |
| C15 |
O01 |
HO01 |
109.5 |
114.1 |
| C02 |
C03 |
C04 |
120.0 |
120.0 |
| C02 |
C03 |
H03 |
120.0 |
120.0 |
| C04 |
C03 |
H03 |
120.0 |
120.0 |
| C03 |
C04 |
C05 |
118.7 |
120.0 |
| C03 |
C04 |
H04 |
120.7 |
120.0 |
| C05 |
C04 |
H04 |
120.7 |
120.0 |
| C04 |
C05 |
H05 |
119.0 |
120.0 |
| C06 |
C05 |
H05 |
119.0 |
120.0 |
| C08 |
C07 |
H07 |
108.8 |
109.5 |
| C08 |
C07 |
H07A |
108.8 |
109.5 |
| C07 |
C08 |
C12 |
109.5 |
109.5 |
| C07 |
C08 |
H08 |
113.5 |
109.5 |
| H07 |
C07 |
H07A |
110.1 |
109.4 |
| C09 |
C08 |
C12 |
113.7 |
109.2 |
| C09 |
C08 |
H08 |
109.3 |
109.6 |
| C12 |
C08 |
H08 |
105.4 |
109.5 |
| C08 |
C12 |
C11 |
114.1 |
109.3 |
| C08 |
C12 |
H12 |
107.9 |
109.5 |
| C08 |
C12 |
H12A |
107.9 |
109.5 |
| C10 |
C09 |
H09 |
108.5 |
109.5 |
| C10 |
C09 |
H09A |
108.5 |
109.5 |
| C09 |
C10 |
H10 |
109.8 |
109.5 |
| C09 |
C10 |
H10A |
109.7 |
109.5 |
| H09 |
C09 |
H09A |
110.4 |
109.6 |
| H10 |
C10 |
H10A |
109.2 |
109.4 |
| C12 |
C11 |
H11 |
108.8 |
109.5 |
| C12 |
C11 |
H11A |
108.8 |
109.4 |
| H11 |
C11 |
H11A |
110.1 |
109.5 |
| H12 |
C12 |
H12A |
110.9 |
109.5 |
| C14 |
C13 |
H13 |
107.2 |
109.4 |
| C14 |
C13 |
H13A |
107.2 |
109.5 |
| H13 |
C13 |
H13A |
111.6 |
109.5 |
| C17 |
C14 |
H14 |
107.9 |
109.4 |
| C15 |
C14 |
H14 |
108.3 |
109.5 |
| C14 |
C15 |
H15 |
101.9 |
109.5 |
| C16 |
C15 |
H15 |
104.0 |
109.5 |
| C16 |
C18 |
H18 |
119.5 |
119.9 |
| H17 |
C17 |
H17A |
109.5 |
109.5 |
| H17 |
C17 |
H17B |
109.5 |
109.4 |
| H17A |
C17 |
H17B |
109.4 |
109.4 |
| C19 |
C18 |
H18 |
119.5 |
120.0 |
| C20 |
C19 |
H19 |
120.0 |
120.0 |
Torsion Angles for QEM
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C16 |
C |
C21 |
H |
180.0 |
179.7 |
| C21 |
C |
C16 |
H |
180.0 |
180.3 |
| C |
C16 |
C15 |
H15 |
323.4 |
340.0 |
| C |
C16 |
C18 |
H18 |
178.6 |
180.0 |
| H |
C |
C16 |
C15 |
358.7 |
0.0 |
| H |
C |
C16 |
C18 |
181.2 |
180.0 |
| C11 |
N |
C10 |
C13 |
136.0 |
124.1 |
| C10 |
N |
C13 |
H13 |
66.7 |
54.2 |
| C10 |
N |
C13 |
H13A |
186.6 |
174.2 |
| C10 |
N |
C11 |
H11 |
177.0 |
181.8 |
| C10 |
N |
C11 |
H11A |
296.9 |
301.7 |
| C10 |
N |
C13 |
C11 |
138.9 |
124.2 |
| C13 |
N |
C11 |
H11 |
329.2 |
305.9 |
| C13 |
N |
C11 |
H11A |
89.2 |
65.8 |
| C14 |
C13 |
N |
H13 |
240.0 |
240.1 |
| C14 |
C13 |
N |
H13A |
120.0 |
120.0 |
| H13 |
C13 |
N |
H13A |
240.0 |
239.9 |
| C10 |
N |
C11 |
C13 |
207.8 |
235.9 |
| C11 |
N |
C13 |
H13 |
287.7 |
289.9 |
| C11 |
N |
C13 |
H13A |
47.7 |
50.0 |
| C08 |
C12 |
C11 |
N |
314.5 |
300.9 |
| C12 |
C11 |
N |
H11 |
240.0 |
239.9 |
| C12 |
C11 |
N |
H11A |
120.0 |
120.0 |
| H11 |
C11 |
N |
H11A |
240.0 |
240.0 |
| O |
C20 |
C19 |
H19 |
359.2 |
0.0 |
| HO |
O |
C20 |
C19 |
180.0 |
90.0 |
| C06 |
C01 |
C02 |
H01 |
180.0 |
180.3 |
| C02 |
C01 |
C06 |
C05 |
0.3 |
359.9 |
| C02 |
C01 |
C06 |
H06 |
180.3 |
179.8 |
| C02 |
C01 |
C06 |
H01 |
180.0 |
179.7 |
| C01 |
C06 |
C05 |
H05 |
179.8 |
180.0 |
| C02 |
C01 |
H01 |
C06 |
180.0 |
180.3 |
| H01 |
C01 |
C06 |
C05 |
180.3 |
180.2 |
| H01 |
C01 |
C06 |
H06 |
0.3 |
0.1 |
| C |
C16 |
C15 |
O01 |
201.6 |
220.0 |
| C07 |
C02 |
C01 |
H01 |
0.1 |
359.8 |
| C07 |
C02 |
C03 |
H03 |
359.8 |
359.9 |
| C03 |
C02 |
C01 |
C06 |
359.7 |
0.0 |
| C03 |
C02 |
C01 |
H01 |
179.7 |
179.7 |
| C04 |
C03 |
C02 |
H03 |
180.0 |
180.1 |
| C02 |
C03 |
C04 |
C05 |
359.8 |
359.9 |
| C02 |
C03 |
C04 |
H04 |
179.8 |
179.9 |
| C02 |
C03 |
C04 |
H03 |
180.0 |
179.9 |
| C05 |
C04 |
C03 |
H04 |
180.0 |
180.0 |
| C03 |
C04 |
C05 |
H05 |
180.2 |
180.1 |
| C02 |
C03 |
H03 |
C04 |
180.0 |
180.1 |
| H03 |
C03 |
C04 |
C05 |
179.8 |
180.0 |
| H03 |
C03 |
C04 |
H04 |
359.8 |
0.0 |
| C01 |
C06 |
C05 |
C04 |
359.8 |
0.1 |
| C05 |
C04 |
C03 |
H03 |
179.8 |
180.0 |
| C03 |
C04 |
C05 |
H04 |
180.0 |
180.0 |
| C06 |
C05 |
C04 |
H05 |
180.0 |
179.9 |
| H04 |
C04 |
C03 |
H03 |
359.8 |
0.0 |
| C03 |
C04 |
H04 |
C05 |
180.0 |
180.0 |
| H04 |
C04 |
C05 |
H05 |
0.2 |
0.1 |
| C05 |
C06 |
C01 |
H01 |
180.3 |
180.2 |
| C01 |
C06 |
C05 |
H06 |
180.0 |
179.9 |
| C06 |
C05 |
C04 |
H04 |
180.2 |
180.0 |
| C04 |
C05 |
C06 |
H05 |
180.0 |
180.1 |
| H05 |
C05 |
C04 |
H04 |
0.2 |
0.1 |
| H06 |
C06 |
C01 |
H01 |
0.3 |
0.1 |
| C01 |
C06 |
H06 |
C05 |
180.0 |
180.1 |
| H06 |
C06 |
C05 |
H05 |
359.8 |
0.1 |
| H07 |
C07 |
C08 |
H07A |
120.0 |
120.0 |
| C09 |
C08 |
C07 |
C12 |
122.9 |
119.7 |
| C09 |
C08 |
C07 |
H08 |
240.3 |
239.8 |
| C12 |
C08 |
C07 |
H08 |
117.4 |
120.1 |
| C07 |
C08 |
C12 |
C11 |
160.1 |
177.6 |
| C07 |
C08 |
C12 |
H12 |
280.2 |
297.5 |
| C07 |
C08 |
C12 |
H12A |
40.1 |
57.7 |
| C08 |
C07 |
H07 |
H07A |
240.9 |
240.0 |
| H07 |
C07 |
C08 |
C12 |
319.3 |
54.9 |
| H07 |
C07 |
C08 |
H08 |
201.9 |
294.9 |
| C08 |
C07 |
H07A |
H07 |
119.1 |
120.1 |
| H07A |
C07 |
C08 |
C12 |
199.3 |
294.9 |
| H07A |
C07 |
C08 |
H08 |
81.9 |
174.9 |
| C09 |
C08 |
C07 |
H07 |
82.2 |
174.7 |
| C09 |
C08 |
C07 |
H07A |
322.2 |
54.7 |
| C07 |
C08 |
C09 |
C12 |
239.9 |
240.1 |
| C07 |
C08 |
C09 |
H08 |
122.4 |
120.2 |
| C12 |
C08 |
C09 |
H08 |
242.6 |
240.1 |
| C09 |
C08 |
C12 |
C11 |
42.2 |
57.6 |
| C09 |
C08 |
C12 |
H12 |
162.2 |
177.6 |
| C09 |
C08 |
C12 |
H12A |
282.2 |
297.7 |
| C12 |
C08 |
C07 |
H07 |
319.3 |
54.9 |
| C12 |
C08 |
C07 |
H07A |
199.3 |
294.9 |
| C07 |
C08 |
C12 |
H08 |
237.6 |
239.9 |
| C09 |
C08 |
C12 |
H08 |
119.7 |
120.0 |
| C08 |
C12 |
C11 |
H11 |
194.4 |
180.8 |
| C08 |
C12 |
C11 |
H11A |
74.5 |
60.9 |
| H12 |
C12 |
C08 |
H12A |
240.0 |
239.9 |
| H08 |
C08 |
C07 |
H07 |
201.9 |
294.9 |
| H08 |
C08 |
C07 |
H07A |
81.9 |
174.9 |
| C07 |
C08 |
H08 |
C12 |
119.8 |
120.1 |
| C09 |
C08 |
H08 |
C12 |
237.4 |
240.3 |
| H08 |
C08 |
C12 |
C11 |
282.5 |
297.7 |
| H08 |
C08 |
C12 |
H12 |
42.5 |
57.6 |
| H08 |
C08 |
C12 |
H12A |
162.5 |
177.8 |
| C09 |
C10 |
N |
C13 |
161.0 |
174.2 |
| C09 |
C10 |
N |
C11 |
297.0 |
298.3 |
| C10 |
C09 |
C08 |
C12 |
311.3 |
302.4 |
| C10 |
C09 |
C08 |
H08 |
68.8 |
62.3 |
| H09 |
C09 |
C10 |
H09A |
120.0 |
120.2 |
| H10 |
C10 |
C09 |
H10A |
120.0 |
119.9 |
| H09 |
C09 |
C08 |
C12 |
71.3 |
62.3 |
| H09 |
C09 |
C08 |
H08 |
188.8 |
182.2 |
| C10 |
C09 |
H09 |
H09A |
241.2 |
239.8 |
| H09 |
C09 |
C10 |
H10 |
178.8 |
179.3 |
| H09 |
C09 |
C10 |
H10A |
58.8 |
59.3 |
| H09A |
C09 |
C08 |
C12 |
191.3 |
182.4 |
| H09A |
C09 |
C08 |
H08 |
308.8 |
302.3 |
| C10 |
C09 |
H09A |
H09 |
118.8 |
120.2 |
| H09A |
C09 |
C10 |
H10 |
58.8 |
59.1 |
| H09A |
C09 |
C10 |
H10A |
298.8 |
299.1 |
| H10 |
C10 |
N |
C13 |
281.0 |
294.2 |
| H10 |
C10 |
N |
C11 |
57.0 |
58.3 |
| H10 |
C10 |
C09 |
H09 |
178.8 |
179.3 |
| H10 |
C10 |
C09 |
H09A |
58.8 |
59.1 |
| C09 |
C10 |
H10 |
H10A |
239.7 |
240.0 |
| H10A |
C10 |
N |
C13 |
41.0 |
54.1 |
| H10A |
C10 |
N |
C11 |
177.0 |
178.2 |
| H10A |
C10 |
C09 |
H09 |
58.8 |
59.3 |
| H10A |
C10 |
C09 |
H09A |
298.8 |
299.1 |
| C09 |
C10 |
H10A |
H10 |
120.4 |
120.0 |
| C12 |
C11 |
N |
C13 |
209.2 |
185.8 |
| N |
C11 |
C12 |
H11 |
120.0 |
120.0 |
| N |
C11 |
C12 |
H11A |
240.0 |
240.0 |
| C11 |
C12 |
C08 |
H08 |
282.5 |
297.7 |
| C08 |
C12 |
C11 |
H12 |
120.0 |
120.0 |
| C08 |
C12 |
C11 |
H12A |
240.0 |
240.1 |
| H11 |
C11 |
C12 |
H11A |
120.0 |
120.0 |
| H11 |
C11 |
N |
C13 |
329.2 |
305.9 |
| N |
C11 |
H11 |
H11A |
119.2 |
120.0 |
| C12 |
C11 |
H11 |
H11A |
240.8 |
240.1 |
| H11A |
C11 |
N |
C13 |
89.2 |
65.8 |
| N |
C11 |
H11A |
H11 |
240.8 |
240.0 |
| C12 |
C11 |
H11A |
H11 |
119.2 |
120.0 |
| H12 |
C12 |
C08 |
H08 |
42.5 |
57.6 |
| C08 |
C12 |
H12 |
C11 |
236.2 |
240.2 |
| C08 |
C12 |
H12 |
H12A |
118.1 |
120.1 |
| H12 |
C12 |
C11 |
H11 |
74.4 |
60.9 |
| H12 |
C12 |
C11 |
H11A |
314.4 |
300.9 |
| H12A |
C12 |
C08 |
H08 |
162.5 |
177.8 |
| C08 |
C12 |
H12A |
C11 |
123.8 |
119.8 |
| C08 |
C12 |
H12A |
H12 |
241.9 |
239.9 |
| H12A |
C12 |
C11 |
H11 |
314.4 |
300.8 |
| H12A |
C12 |
C11 |
H11A |
194.5 |
180.8 |
| N |
C13 |
C14 |
H13 |
120.0 |
120.0 |
| N |
C13 |
C14 |
H13A |
240.0 |
240.0 |
| H13 |
C13 |
C14 |
H13A |
120.0 |
120.0 |
| N |
C13 |
H13 |
H13A |
117.1 |
120.0 |
| C14 |
C13 |
H13 |
H13A |
242.9 |
240.0 |
| N |
C13 |
H13A |
H13 |
242.8 |
240.0 |
| C14 |
C13 |
H13A |
H13 |
117.1 |
120.0 |
| C17 |
C14 |
C13 |
H13 |
115.4 |
175.1 |
| C17 |
C14 |
C13 |
H13A |
355.4 |
55.0 |
| C15 |
C14 |
C17 |
H14 |
240.6 |
240.0 |
| C17 |
C14 |
C15 |
H15 |
163.4 |
184.9 |
| C |
C16 |
C15 |
C14 |
75.8 |
100.0 |
| C14 |
C15 |
O01 |
HO01 |
180.0 |
60.0 |
| C15 |
C14 |
C13 |
H13 |
353.9 |
55.0 |
| C15 |
C14 |
C13 |
H13A |
233.9 |
295.0 |
| C17 |
C14 |
C15 |
H14 |
119.2 |
119.9 |
| C16 |
C15 |
C14 |
H15 |
246.5 |
240.0 |
| H14 |
C14 |
C13 |
H13 |
234.5 |
295.0 |
| H14 |
C14 |
C13 |
H13A |
114.5 |
175.0 |
| H14 |
C14 |
C15 |
H15 |
44.1 |
65.0 |
| C15 |
C16 |
C |
H |
358.7 |
0.0 |
| C |
C16 |
C15 |
C18 |
182.4 |
179.9 |
| C16 |
C15 |
O01 |
HO01 |
48.9 |
300.0 |
| C16 |
C15 |
C14 |
H14 |
290.6 |
305.0 |
| C14 |
C15 |
C16 |
H15 |
112.4 |
120.0 |
| H15 |
C15 |
O01 |
HO01 |
293.7 |
180.0 |
| H15 |
C15 |
C14 |
H14 |
44.1 |
65.0 |
| C18 |
C16 |
C |
H |
181.2 |
180.0 |
| C |
C16 |
C18 |
C15 |
177.6 |
180.1 |
| C18 |
C16 |
C15 |
H15 |
141.0 |
160.1 |
| C19 |
C18 |
C16 |
H18 |
180.0 |
180.0 |
| H17 |
C17 |
C14 |
H14 |
57.6 |
300.0 |
| H17A |
C17 |
H17 |
H17B |
120.0 |
119.9 |
| H17A |
C17 |
C14 |
H14 |
177.6 |
60.0 |
| H17 |
C17 |
H17A |
H17B |
240.0 |
240.0 |
| H17B |
C17 |
C14 |
H14 |
297.6 |
180.0 |
| H17 |
C17 |
H17B |
H17A |
120.0 |
120.0 |
| O |
C20 |
C19 |
C18 |
179.2 |
180.0 |
| C16 |
C18 |
C19 |
H18 |
180.0 |
180.0 |
| C19 |
C20 |
O |
HO |
180.0 |
90.0 |
| C20 |
C19 |
C18 |
H18 |
181.1 |
180.0 |
| H19 |
C19 |
C18 |
H18 |
1.1 |
0.0 |
| C20 |
C21 |
C |
H |
179.3 |
179.7 |
| C21 |
C20 |
O |
HO |
359.7 |
270.3 |
| C21 |
C20 |
C19 |
H19 |
179.4 |
179.7 |
| H21 |
C21 |
C |
H |
359.3 |
0.2 |