Atom Nomenclature for QEL

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for QEL

Atom Name (V3) Atom Name (V2)
C1 C1
N1 N1
O1 O1
C2 C2
O2 O2
C3 C3
C4 C4
C5 C5
C6 C6
C7 C7
C8 C8
C9 C9
C01 C01
C02 C02
C10 C10
C11 C11
C12 C12
C13 C13
C14 C14
C15 C15
C16 C16
C18 C18
C19 C19
C24 C24
H1 H1
H2 H2
HO2 HO2
H3 H3
H5 H5
H6 H6
H7 H7
H7A H7A
H8 H8
H9 H9
H9A H9A
H01 H01
H02 H02
H10 H10
H10A H10A
H11 H11
H11A H11A
H12 H12
H12A H12A
H13 H13
H16 H16
H19 H19
H24 H24
H24A H24A
H24B H24B
H26 H26
H27 H27