PDB Chemical Component QDN

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for QDN

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O	C	1.428	1.428
O	C1	1.372	1.359
C9	C1	1.390	1.398
C9	C8	1.364	1.360
C1	C2	1.367	1.366
C8	C7	1.412	1.406
C2	C3	1.421	1.403
O1	C10	1.421	1.429
C3	C7	1.419	1.417
C3	C4	1.425	1.408
C7	N	1.371	1.337
C10	C4	1.522	1.507
C10	C11	1.537	1.530
C4	C5	1.369	1.365
N	C6	1.322	1.311
C6	C5	1.385	1.394
C16	N1	1.468	1.469
C16	C17	1.543	1.532
N1	C11	1.482	1.469
N1	C15	1.470	1.469
C11	C12	1.532	1.531
C18	C19	1.323	1.311
C18	C17	1.493	1.507
C17	C13	1.538	1.534
C12	C13	1.528	1.534
C15	C14	1.522	1.531
C13	C14	1.527	1.533
O1	H1	0.950	0.968
C10	H2	1.100	1.090
C11	H3	1.100	1.090
C15	H5	1.100	1.090
C15	H6	1.100	1.090
C14	H7	1.100	1.091
C14	H8	1.101	1.091
C16	H9	1.100	1.089
C16	H10	1.100	1.090
C17	H11	1.100	1.090
C18	H12	1.080	1.080
C19	H13	1.080	1.080
C19	H14	1.081	1.079
C13	H15	1.100	1.090
C12	H16	1.100	1.090
C12	H17	1.100	1.091
C5	H18	1.080	1.080
C6	H19	1.081	1.079
C2	H20	1.080	1.079
C8	H21	1.080	1.079
C9	H22	1.080	1.080
C	H23	1.100	1.091
C	H24	1.100	1.090
C	H25	1.100	1.090

Bond Angles for QDN

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O	C	H23	109.5	109.5
O	C	H24	109.5	109.5
O	C	H25	109.5	109.5
C1	C9	H22	119.8	119.5
C9	C8	H21	119.6	120.1
C1	C2	H20	119.9	120.2
O1	C10	C4	110.7	109.5
O1	C10	C11	108.6	109.5
C10	O1	H1	109.5	114.0
O1	C10	H2	110.5	109.5
C11	C10	C4	108.9	109.5
C10	C4	C5	120.4	120.9
C4	C10	H2	109.1	109.5
C10	C11	C12	113.9	109.5
C11	C10	H2	108.9	109.5
C10	C11	H3	106.0	109.5
C4	C5	H18	120.1	120.1
N	C6	H19	117.7	119.1
C6	C5	H18	120.1	120.0
C16	C17	C13	107.0	108.8
C17	C16	H9	108.9	109.5
C17	C16	H10	108.9	109.4
C16	C17	H11	107.2	109.6
N1	C11	C12	111.0	109.3
N1	C11	H3	106.6	109.5
N1	C15	C14	111.3	109.3
N1	C15	H5	109.0	109.5
N1	C15	H6	109.0	109.5
C11	C12	C13	108.3	108.8
C12	C11	H3	106.0	109.5
C11	C12	H16	109.8	109.6
C11	C12	H17	109.8	109.6
C19	C18	H12	118.0	120.0
C18	C19	H13	120.0	120.0
C18	C19	H14	120.0	120.0
C18	C17	C13	115.0	109.6
C18	C17	H11	107.7	109.7
C13	C17	H11	107.2	109.6
C17	C13	H15	110.1	110.1
C12	C13	H15	110.2	110.8
C14	C15	H5	109.0	109.5
C14	C15	H6	109.0	109.5
C15	C14	H7	109.8	109.6
C15	C14	H8	109.8	109.5
C13	C14	H7	109.7	109.6
C13	C14	H8	109.7	109.7
H5	C15	H6	109.5	109.5
H7	C14	H8	109.5	109.5
H9	C16	H10	109.5	109.5
H13	C19	H14	120.0	120.0
H16	C12	H17	109.5	109.7
H23	C	H24	109.5	109.5
H23	C	H25	109.4	109.4
H24	C	H25	109.5	109.5

Torsion Angles for QDN

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
H23	C	O	H24	240.0	240.0
H23	C	O	H25	120.0	120.0
H24	C	O	H25	240.0	240.0
O	C1	C9	H22	6.5	0.2
O	C1	C2	H20	356.8	0.1
C1	C9	C8	H21	175.2	180.0
C9	C1	C2	H20	177.7	180.3
C11	C10	O1	C4	119.5	120.0
O1	C10	C4	C5	28.8	55.0
C4	C10	O1	H2	121.0	120.0
O1	C10	C11	C12	323.9	54.0
C11	C10	O1	H2	240.6	240.0
O1	C10	C11	H3	207.7	294.0
C3	C4	C10	H2	331.0	354.7
C3	C4	C5	H18	180.4	180.3
C7	N	C6	H19	179.1	180.0
O1	C10	C4	C11	119.4	120.0
C4	C10	O1	H1	180.0	300.1
O1	C10	C4	H2	238.1	240.0
C4	C10	C11	C12	84.6	174.0
C11	C10	C4	H2	118.7	120.0
C4	C10	C11	H3	328.4	54.0
C10	C4	C5	H18	0.6	360.0
O1	C10	C11	C4	239.3	240.0
C11	C10	O1	H1	299.6	60.0
O1	C10	C11	H2	120.5	120.0
C11	C10	C4	C5	269.5	295.0
C4	C10	C11	H2	241.1	240.0
N1	C11	C10	C12	127.6	119.9
N1	C11	C10	H3	243.8	239.9
C10	C11	C12	C13	138.6	119.9
C12	C11	C10	H3	116.2	120.0
C10	C11	C12	H16	258.4	239.8
C10	C11	C12	H17	18.8	0.2
C5	C4	C10	H2	150.7	175.0
C6	C5	C4	H18	180.0	180.0
N	C6	C5	H18	180.6	180.0
C4	C5	C6	H18	180.0	180.0
C16	N1	C11	C12	52.8	62.1
C16	N1	C11	H3	167.8	182.0
C16	N1	C15	H5	53.1	57.9
C16	N1	C15	H6	172.5	177.9
C18	C17	C16	C13	127.1	119.8
C18	C17	C16	H11	241.8	239.6
C13	C17	C16	H11	114.7	119.8
C16	C17	C13	H15	174.7	180.4
H9	C16	C17	H10	119.3	120.0
N1	C11	C10	C4	212.1	293.9
C10	C11	N1	C12	230.9	240.0
N1	C11	C10	H2	331.0	53.9
C10	C11	N1	H3	115.9	120.1
N1	C11	C12	C13	10.1	360.0
C12	C11	N1	H3	245.0	240.1
N1	C11	C12	H16	129.9	119.8
N1	C11	C12	H17	250.3	240.2
C15	N1	C11	C12	294.7	298.0
C15	N1	C11	H3	49.7	58.0
C14	C15	N1	H5	239.7	240.0
C14	C15	N1	H6	120.3	120.0
N1	C15	C14	H7	131.3	119.9
N1	C15	C14	H8	251.6	240.1
H5	C15	N1	H6	240.6	239.9
C12	C11	C10	C4	84.6	174.0
C12	C11	C10	H2	203.4	294.0
C10	C11	C12	H3	243.9	240.0
N1	C11	C12	H3	115.4	120.0
C11	C12	C13	H15	173.8	180.0
H16	C12	C11	H17	239.6	239.6
C19	C18	C17	C13	238.7	239.3
C19	C18	C17	H11	358.1	359.7
H13	C19	C18	H14	180.0	180.0
C16	C17	C18	C13	237.3	240.7
C18	C17	C16	H9	16.7	359.7
C18	C17	C16	H10	257.4	239.7
C16	C17	C18	H11	117.8	120.3
C13	C17	C18	H11	240.5	239.6
C18	C17	C13	H15	49.1	60.7
C13	C17	C16	H9	249.6	240.0
C13	C17	C16	H10	130.3	119.9
C16	C17	C13	H11	245.3	240.2
C11	C12	C13	C17	295.4	301.1
C18	C17	C13	H11	119.7	120.4
C12	C13	C17	H15	238.3	238.5
C17	C13	C14	H7	293.4	299.1
C17	C13	C14	H8	173.0	178.8
C13	C12	C11	H3	254.7	240.0
C11	C12	C13	H16	119.8	119.9
C11	C12	C13	H17	240.2	240.2
C12	C13	C17	H11	167.7	178.8
C17	C13	C12	H15	121.6	121.1
C12	C13	C14	H7	174.4	181.2
C12	C13	C14	H8	54.0	60.9
N1	C15	C14	H5	120.3	120.0
N1	C15	C14	H6	239.7	240.0
C13	C14	C15	H7	240.2	240.2
C13	C14	C15	H8	119.8	120.0
H5	C15	C14	H6	119.4	120.1
H7	C14	C15	H8	239.6	239.8
C11	C12	C13	C14	53.2	59.0
C13	C14	C15	H5	251.2	240.1
C13	C14	C15	H6	131.8	120.0
C15	C14	C13	H7	119.8	119.8
C15	C14	C13	H8	240.2	240.1
H7	C14	C13	H8	120.3	120.3
H1	O1	C10	C4	180.0	300.1
H1	O1	C10	C11	299.6	60.0
H1	O1	C10	H2	59.0	180.0
O1	C10	H2	C4	122.0	120.0
O1	C10	H2	C11	240.7	240.0
H2	C10	O1	H1	59.0	180.0
C11	C10	H2	C4	241.3	240.0
H2	C10	C4	C5	150.7	175.0
H2	C10	C11	C12	203.4	294.0
H2	C10	C11	H3	87.3	174.0
H3	C11	C10	C4	328.4	54.0
C10	C11	H3	C12	121.4	120.0
H3	C11	C10	H2	87.3	174.0
N1	C11	H3	C12	241.7	240.1
H3	C11	C12	C13	254.7	240.0
H3	C11	C12	H16	14.5	359.8
H3	C11	C12	H17	134.9	120.2
N1	C15	H5	C14	238.3	240.2
N1	C15	H5	H6	119.1	120.1
C14	C15	H5	H6	240.8	239.9
H5	C15	C14	H7	11.0	359.9
H5	C15	C14	H8	131.4	120.1
N1	C15	H6	C14	121.7	119.8
N1	C15	H6	H5	240.9	239.9
C14	C15	H6	H5	119.2	120.1
H6	C15	C14	H7	251.6	239.9
H6	C15	C14	H8	11.9	0.0
H7	C14	C15	H5	11.0	359.9
H7	C14	C15	H6	251.6	239.9
C15	C14	H7	H8	120.5	120.2
C13	C14	H7	H8	239.5	239.6
H8	C14	C15	H5	131.4	120.1
H8	C14	C15	H6	11.9	0.0
C15	C14	H8	H7	239.5	239.8
C13	C14	H8	H7	120.5	120.4
H9	C16	C17	C13	249.6	240.0
C17	C16	H9	H10	241.1	240.0
H9	C16	C17	H11	134.8	120.1
H10	C16	C17	C13	130.3	119.9
C17	C16	H10	H9	118.9	120.0
H10	C16	C17	H11	15.6	0.1
C16	C17	H11	C13	114.6	119.4
H11	C17	C16	H9	134.8	120.1
H11	C17	C16	H10	15.6	0.1
C18	C17	H11	C13	235.7	239.7
H11	C17	C13	H15	289.4	300.3
H12	C18	C19	H13	0.0	180.0
H12	C18	C19	H14	180.0	0.0
H12	C18	C17	C13	58.7	59.3
H12	C18	C17	H11	178.1	179.7
H13	C19	C18	H12	0.0	180.0
C18	C19	H13	H14	180.0	180.0
H14	C19	C18	H12	180.0	0.0
C18	C19	H14	H13	180.0	180.0
H15	C13	C17	H11	289.4	300.3
H15	C13	C14	H7	53.8	59.8
H15	C13	C14	H8	293.4	299.4
C11	C12	H16	C13	241.1	240.6
H16	C12	C11	H3	14.5	359.8
C11	C12	H16	H17	120.6	120.3
H16	C12	C13	H15	54.0	60.1
C11	C12	H17	C13	118.9	119.3
H17	C12	C11	H3	134.9	120.2
C11	C12	H17	H16	239.5	239.6
H17	C12	C13	H15	293.6	299.8
H19	C6	C5	H18	0.7	360.0
H22	C9	C8	H21	355.2	359.8
O	C	H23	H24	120.0	120.0
O	C	H23	H25	240.0	240.0
H24	C	H23	H25	120.0	120.0
O	C	H24	H23	239.9	240.0
O	C	H24	H25	120.0	120.0
H23	C	H24	H25	240.0	240.0
O	C	H25	H23	120.0	120.0
O	C	H25	H24	240.0	239.9
H23	C	H25	H24	120.0	120.0