PDB Chemical Component QDM

Ideal Model

Chemical Description

Name TDP-3,6-dideoxy-3-N,N-dimethylglucose
Formula C18 H31 N3 O14 P2
Formal charge 0
Molecular weight 575.398 g/mol
Component type NON-POLYMER

Chemical features

Atom count 68
Chiral atom count 8
Chiral atoms C1Q C2Q C3Q C4Q C5Q C4' C3' C1'
Bond count 70
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) (2R,3R,4S,5S,6R)-4-(dimethylamino)-3,5-dihydroxy-6-methyltetrahydro-2H-pyran-2-yl [(2R,3S,5R)-3-hydroxy-5-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)tetrahydrofuran-2-yl]methyl dihydrogen diphosphate (non-preferred name)
Systematic name (OpenEye OEToolkits) [(2R,3R,4S,5S,6R)-4-(dimethylamino)-6-methyl-3,5-bis(oxidanyl)oxan-2-yl] [[(2R,3S,5R)-5-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] hydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) C[C@H]1O[C@H](O[P](O)(=O)O[P](O)(=O)OC[C@H]2O[C@H](C[C@@H]2O)N3C=C(C)C(=O)NC3=O)[C@H](O)[C@H]([C@@H]1O)N(C)C
SMILES (CACTVS) C[CH]1O[CH](O[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH](C[CH]2O)N3C=C(C)C(=O)NC3=O)[CH](O)[CH]([CH]1O)N(C)C
Stereo SMILES (OpenEye) C[C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)OP(=O)(O)OP(=O)(O)OC[C@@H]2[C@H](C[C@@H](O2)N3C=C(C(=O)NC3=O)C)O)O)N(C)C)O
InChI descriptor InChI=1S/C18H31N3O14P2/c1-8-6-21(18(26)19-16(8)25)12-5-10(22)11(33-12)7-31-36(27,28)35-37(29,30)34-17-15(24)13(20(3)4)14(23)9(2)32-17/h6,9-15,17,22-24H,5,7H2,1-4H3,(H,27,28)(H,29,30)(H,19,25,26)/t9-,10+,11-,12-,13+,14-,15-,17-/m1/s1
InChIKey descriptor IJJNPDQFXCRKOA-WHRNYZGVSA-N

Status Information

Last modified 2014-02-21
Created 2014-02-17
Release status REL
Model PDB code 4OQD
Processing site RCSB