PDB Chemical Component QDK

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for QDK

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	O1	1.495	1.429
C1	C2	1.529	1.507
C2	O2	1.241	1.208
C2	C3	1.576	1.507
C3	O3	1.445	1.429
C3	C4	1.575	1.529
C4	O4	1.463	1.429
C4	C5	1.512	1.530
C5	O5	1.448	1.429
C1	H11	1.100	1.090
C1	H12	1.100	1.090
O1	HO1	0.950	0.967
C3	H3	1.100	1.090
O3	HO3	0.950	0.967
C4	H4	1.099	1.090
O4	HO4	0.950	0.968
C5	H51	1.100	1.090
C5	H52	1.099	1.090
O5	HO5	0.950	0.967

Bond Angles for QDK

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O1	C1	C2	109.4	109.4
O1	C1	H11	109.5	109.5
O1	C1	H12	109.5	109.5
C1	O1	HO1	109.5	114.0
C1	C2	O2	117.6	120.0
C1	C2	C3	121.7	120.0
C2	C1	H11	109.5	109.4
C2	C1	H12	109.5	109.5
O2	C2	C3	120.5	120.0
C2	C3	O3	109.5	109.5
C2	C3	C4	113.1	109.5
C2	C3	H3	106.5	109.5
O3	C3	C4	108.2	109.5
O3	C3	H3	111.6	109.4
C3	O3	HO3	109.5	114.0
C3	C4	O4	110.1	109.5
C3	C4	C5	112.3	109.5
C4	C3	H3	107.9	109.5
C3	C4	H4	106.0	109.5
O4	C4	C5	105.8	109.4
O4	C4	H4	112.4	109.5
C4	O4	HO4	109.5	114.0
C4	C5	O5	106.8	109.5
C5	C4	H4	110.3	109.4
C4	C5	H51	110.4	109.5
C4	C5	H52	110.4	109.5
O5	C5	H51	110.3	109.5
O5	C5	H52	110.4	109.5
C5	O5	HO5	109.5	113.9
H11	C1	H12	109.5	109.5
H51	C5	H52	108.6	109.4

Torsion Angles for QDK

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O1	C1	C2	O2	34.1	0.0
O1	C1	C2	C3	218.7	180.0
C2	C1	O1	H11	240.0	240.1
C2	C1	O1	H12	120.0	120.0
H11	C1	O1	H12	240.0	239.9
O1	C1	C2	H11	120.0	120.0
O1	C1	C2	H12	240.0	240.0
C2	C1	O1	HO1	344.9	180.0
O2	C2	C1	C3	175.4	180.1
C1	C2	C3	O3	201.6	165.0
C1	C2	C3	C4	322.4	285.0
C1	C2	C3	H3	80.8	45.1
H11	C1	C2	H12	120.0	120.0
C1	C2	O2	C3	184.5	179.9
O2	C2	C1	H11	274.1	240.0
O2	C2	C1	H12	154.1	120.0
O2	C2	C3	O3	26.3	345.0
O2	C2	C3	C4	147.1	104.9
O2	C2	C3	H3	265.5	225.0
C1	C2	C3	O2	175.3	180.1
C3	C2	C1	H11	98.7	60.0
C3	C2	C1	H12	338.7	300.0
O3	C3	C2	C4	239.2	240.0
O3	C3	C2	H3	120.8	119.9
C2	C3	O3	HO3	348.8	60.0
C2	C3	C4	O4	177.3	60.0
C2	C3	C4	C5	294.9	180.0
C4	C3	C2	H3	241.6	239.9
C2	C3	C4	H4	55.4	300.0
C2	C3	O3	C4	123.7	120.0
C2	C3	O3	H3	242.3	240.0
O3	C3	C4	O4	298.8	180.0
O3	C3	C4	C5	56.4	300.0
C4	C3	O3	H3	118.6	120.0
O3	C3	C4	H4	176.9	60.0
C2	C3	C4	O3	238.5	240.0
C2	C3	C4	H3	117.6	120.1
O3	C3	C4	H3	239.1	240.1
C4	C3	O3	HO3	225.1	300.0
O4	C4	C3	C5	242.4	240.0
O4	C4	C3	H4	121.9	120.1
C3	C4	O4	HO4	180.0	59.9
C3	C4	C5	O5	177.9	175.0
C5	C4	C3	H4	239.5	240.0
C3	C4	C5	H51	297.9	295.0
C3	C4	C5	H52	57.9	55.0
C3	C4	O4	C5	121.5	120.0
O4	C4	C3	H3	59.7	300.0
C3	C4	O4	H4	242.0	239.9
O4	C4	C5	O5	298.1	295.0
C5	C4	O4	H4	120.5	119.9
O4	C4	C5	H51	58.1	55.0
O4	C4	C5	H52	178.0	175.0
C3	C4	C5	O4	239.8	240.0
C5	C4	C3	H3	177.3	59.9
C3	C4	C5	H4	118.0	120.0
O4	C4	C5	H4	238.2	240.0
C5	C4	O4	HO4	58.4	300.0
O5	C5	C4	H51	240.0	240.0
O5	C5	C4	H52	120.0	120.0
C4	C5	O5	HO5	180.0	180.0
H51	C5	C4	H52	240.0	240.0
O5	C5	C4	H4	59.9	55.0
C4	C5	O5	H51	120.0	120.0
C4	C5	O5	H52	240.0	240.0
H51	C5	O5	H52	120.0	119.9
O1	C1	H11	C2	240.1	240.1
O1	C1	H11	H12	120.0	120.1
H11	C1	O1	HO1	104.9	299.9
H11	C1	C2	O2	274.1	240.0
H11	C1	C2	C3	98.7	60.0
C2	C1	H11	H12	240.0	240.0
O1	C1	H12	C2	119.9	120.0
O1	C1	H12	H11	240.0	240.0
H12	C1	O1	HO1	224.9	60.0
H12	C1	C2	O2	154.1	120.0
H12	C1	C2	C3	338.7	300.0
C2	C1	H12	H11	120.0	120.0
HO1	O1	C1	C2	344.9	180.0
HO1	O1	C1	H11	104.9	299.9
HO1	O1	C1	H12	224.9	60.0
C2	C3	H3	O3	119.5	120.0
C2	C3	H3	C4	238.3	239.9
O3	C3	H3	C4	118.8	120.0
H3	C3	O3	HO3	106.5	180.0
H3	C3	C4	O4	59.7	300.0
H3	C3	C4	C5	177.3	59.9
H3	C3	C4	H4	297.9	179.9
HO3	O3	C3	C4	225.1	300.0
HO3	O3	C3	H3	106.5	180.0
C3	C4	H4	O4	120.4	120.1
C3	C4	H4	C5	238.2	240.0
H4	C4	C3	H3	297.9	179.9
O4	C4	H4	C5	117.9	119.9
H4	C4	O4	HO4	298.0	180.0
H4	C4	C5	O5	59.9	55.0
H4	C4	C5	H51	179.9	175.0
H4	C4	C5	H52	299.9	295.0
HO4	O4	C4	C5	58.4	300.0
HO4	O4	C4	H4	298.0	180.0
C4	C5	H51	O5	242.1	240.0
H51	C5	C4	H4	179.9	175.0
C4	C5	H51	H52	121.1	120.0
O5	C5	H51	H52	238.9	240.0
H51	C5	O5	HO5	60.0	59.9
C4	C5	H52	O5	117.9	120.0
H52	C5	C4	H4	299.9	295.0
C4	C5	H52	H51	238.9	240.0
O5	C5	H52	H51	121.1	120.0
H52	C5	O5	HO5	300.0	300.0
HO5	O5	C5	H51	60.0	59.9
HO5	O5	C5	H52	300.0	300.0