PDB Chemical Component Q2Y

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for Q2Y

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O36 C6 1.251 1.357
O36 H36 0.950 0.981
C6 O35 1.252 1.224
C6 C7 1.518 1.509
C7 C27 1.530 1.523
C7 H71 1.115 1.097
C7 H72 1.115 1.097
C27 C18 1.510 1.521
C27 N5 1.456 1.440
C27 H27 1.115 1.095
C18 O32 1.222 1.231
C18 C1   1.507
N5 C10 1.336 1.390
N5 HN5 1.020 1.018
C10 O33 1.221 1.228
C10 C9 1.509 1.518
C9 C12 1.513 1.506
C9 H91 1.115 1.097
C9 H92 1.115 1.097
C12 C21 1.263 1.360
C12 S37 1.655 1.700
C21 C23 1.404 1.425
C21 H21 1.103 1.083
C23 C14 1.265 1.378
C23 H23 1.103 1.082
C14 S37 1.650 1.713
C14 C17 1.511 1.479
C17 N3 1.455 1.444
C17 H171 1.115 1.104
C17 H172 1.115 1.103
N3 C19 1.333 1.386
N3 HN3 1.020 1.015
C19 O34 1.219 1.229
C19 C20 1.504 1.485
C20 C22 1.395 1.380
C20 C26 1.393 1.379
C22 C11 1.395 1.395
C22 H22 1.103 1.087
C11 C24 1.395 1.395
C11 H11 1.103 1.087
C26 C25 1.398 1.395
C26 H26 1.102 1.087
C25 C24 1.399 1.395
C25 H25 1.103 1.086
C24 N2 1.367 1.411
N2 C13 1.368 1.408
N2 HN2 1.020 1.017
C13 C29 1.399 1.371
C13 N1 1.349 1.346
C29 N4 1.346 1.345
C29 H29 1.103 1.084
N4 C31 1.346 1.345
C31 C30 1.398 1.393
C31 C8 1.396 1.407
C30 C15 1.398 1.394
C30 H30 1.103 1.088
C8 N1 1.345 1.345
C8 C16 1.399 1.393
C16 C28 1.396 1.394
C16 H16 1.103 1.088
C28 C15 1.396 1.386
C28 H28 1.103 1.085
C15 H15 1.103 1.086
C1 H11A   1.092
C1 H12   1.093
C1 H13   1.094

Bond Angles for Q2Y

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C6 O36 H36 122.0 115.0
O36 C6 O35 121.9 123.5
O36 C6 C7 119.9 112.5
O35 C6 C7 118.2 124.0
C6 C7 C27 113.3 111.3
C6 C7 H71 110.8 108.1
C6 C7 H72 110.8 108.1
C27 C7 H71 110.8 111.4
C27 C7 H72 110.8 111.7
C7 C27 C18 109.2 110.4
C7 C27 N5 110.9 112.3
C7 C27 H27 109.5 111.8
H71 C7 H72 99.5 105.8
C18 C27 N5 111.8 107.2
C18 C27 H27 108.6 108.9
C27 C18 O32 118.1 122.4
C27 C18 C1   116.5
N5 C27 H27 106.8 106.1
C27 N5 C10 123.8 122.7
C27 N5 HN5 122.7 118.7
O32 C18 C1   121.0
C18 C1 H11A   109.6
C18 C1 H12   109.7
C18 C1 H13   109.7
C10 N5 HN5 113.5 118.6
N5 C10 O33 124.0 124.9
N5 C10 C9 116.5 111.6
O33 C10 C9 119.4 123.5
C10 C9 C12 109.8 113.3
C10 C9 H91 112.1 108.8
C10 C9 H92 112.1 108.6
C12 C9 H91 112.1 109.6
C12 C9 H92 112.1 109.7
C9 C12 C21 124.9 127.6
C9 C12 S37 126.0 118.6
H91 C9 H92 98.3 106.6
C21 C12 S37 109.0 113.8
C12 C21 C23 113.3 111.2
C12 C21 H21 118.7 124.5
C12 S37 C14 94.3 91.0
C23 C21 H21 127.9 124.3
C21 C23 C14 114.2 112.1
C21 C23 H23 127.5 124.4
C14 C23 H23 118.3 123.5
C23 C14 S37 108.7 112.0
C23 C14 C17 125.2 128.5
S37 C14 C17 126.1 119.5
C14 C17 N3 112.9 112.8
C14 C17 H171 110.9 111.7
C14 C17 H172 111.0 112.1
N3 C17 H171 111.0 106.9
N3 C17 H172 110.9 106.8
C17 N3 C19 121.4 122.4
C17 N3 HN3 123.7 117.0
H171 C17 H172 99.4 106.1
C19 N3 HN3 114.9 120.4
N3 C19 O34 120.8 124.9
N3 C19 C20 121.5 115.9
O34 C19 C20 117.7 119.2
C19 C20 C22 119.8 118.8
C19 C20 C26 121.0 118.9
C22 C20 C26 119.2 122.2
C20 C22 C11 120.6 118.9
C20 C22 H22 119.7 121.7
C20 C26 C25 120.1 118.9
C20 C26 H26 119.8 121.8
C11 C22 H22 119.7 119.4
C22 C11 C24 120.6 120.0
C22 C11 H11 119.7 119.5
C24 C11 H11 119.7 120.5
C11 C24 C25 118.6 120.0
C11 C24 N2 118.2 120.0
C25 C26 H26 120.1 119.3
C26 C25 C24 120.9 120.0
C26 C25 H25 119.6 119.4
C24 C25 H25 119.6 120.6
C25 C24 N2 123.1 120.0
C24 N2 C13 127.2 132.6
C24 N2 HN2 106.0 113.6
C13 N2 HN2 106.0 113.8
N2 C13 C29 119.1 118.7
N2 C13 N1 122.0 119.9
C29 C13 N1 118.8 121.4
C13 C29 N4 120.2 121.7
C13 C29 H29 121.8 122.7
C13 N1 C8 121.2 117.9
N4 C29 H29 118.0 115.6
C29 N4 C31 120.5 117.8
N4 C31 C30 120.5 120.2
N4 C31 C8 119.7 120.6
C30 C31 C8 119.8 119.1
C31 C30 C15 120.2 121.3
C31 C30 H30 119.9 120.0
C31 C8 N1 119.5 120.7
C31 C8 C16 120.1 119.1
C15 C30 H30 119.9 118.7
C30 C15 C28 119.9 119.6
C30 C15 H15 120.1 120.1
N1 C8 C16 120.4 120.3
C8 C16 C28 120.1 121.3
C8 C16 H16 120.1 119.9
C28 C16 H16 119.9 118.8
C16 C28 C15 120.0 119.6
C16 C28 H28 120.0 120.1
C15 C28 H28 120.0 120.3
C28 C15 H15 120.0 120.3
H11A C1 H12   110.2
H11A C1 H13   108.7
H12 C1 H13   108.9

Torsion Angles for Q2Y

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O35 C6 O36 C7 179.8 180.6
O36 C6 C7 C27 342.6 153.4
O36 C6 C7 H71 217.3 30.6
O36 C6 C7 H72 107.9 276.5
H36 O36 C6 O35 180.0 359.9
H36 O36 C6 C7 0.2 179.4
O35 C6 O36 H36 180.0 359.9
O36 C6 O35 C7 180.2 179.4
O35 C6 C7 C27 162.8 332.8
O35 C6 C7 H71 37.5 210.1
O35 C6 C7 H72 288.0 95.9
C7 C6 O36 H36 0.2 179.4
O36 C6 C7 O35 179.8 180.6
C27 C7 C6 H71 125.2 122.7
C27 C7 C6 H72 234.7 236.9
C6 C7 C27 C18 149.2 179.2
C6 C7 C27 N5 272.8 298.7
C6 C7 C27 H27 30.4 57.9
H71 C7 C6 H72 109.5 114.2
C6 C7 C27 H71 234.8 239.2
C6 C7 C27 H72 125.3 121.0
H71 C7 C27 H72 250.5 241.9
C18 C27 C7 N5 236.4 240.5
C18 C27 C7 H27 118.8 121.3
C7 C27 C18 O32 279.0 84.8
C7 C27 C18 C1   267.0
N5 C27 C7 H27 242.4 240.8
C7 C27 N5 C10 154.7 152.3
C7 C27 N5 HN5 334.7 332.4
C6 C7 H71 C27 126.6 122.7
C6 C7 H71 H72 243.3 244.3
C27 C7 H71 H72 116.7 121.6
H71 C7 C27 C18 274.5 300.0
H71 C7 C27 N5 38.0 59.5
H71 C7 C27 H27 155.7 178.7
C6 C7 H72 C27 233.3 237.1
C6 C7 H72 H71 116.7 115.7
C27 C7 H72 H71 243.3 238.6
H72 C7 C27 C18 23.9 58.1
H72 C7 C27 N5 147.5 177.7
H72 C7 C27 H27 265.2 296.8
C18 C27 C7 H71 274.5 300.0
C18 C27 C7 H72 23.9 58.1
C7 C27 C18 N5 123.1 122.6
C7 C27 C18 H27 240.6 237.0
N5 C27 C18 H27 117.6 114.4
C18 C27 N5 C10 276.8 273.7
C18 C27 N5 HN5 96.8 93.8
O32 C18 C27 C1   177.8
C27 C18 C1 H11A   299.5
C27 C18 C1 H12   60.7
C27 C18 C1 H13   180.2
N5 C27 C7 H71 38.0 59.5
N5 C27 C7 H72 147.5 177.7
C7 C27 N5 C18 237.9 238.6
C7 C27 N5 H27 119.3 122.4
C18 C27 N5 H27 241.4 243.8
N5 C27 C18 O32 155.9 322.2
N5 C27 C18 C1   144.4
C10 N5 C27 HN5 180.0 179.9
C27 N5 C10 O33 333.4 0.1
C27 N5 C10 C9 153.8 179.8
H27 C27 C7 H71 155.7 178.7
H27 C27 C7 H72 265.2 296.8
C7 C27 H27 C18 119.2 122.2
C7 C27 H27 N5 239.9 237.2
C18 C27 H27 N5 120.7 115.1
H27 C27 C18 O32 38.4 207.8
H27 C27 C18 C1   30.0
H27 C27 N5 C10 35.4 29.9
H27 C27 N5 HN5 215.4 210.0
O32 C18 C27 N5 155.9 322.2
O32 C18 C27 H27 38.4 207.8
C27 C18 O32 C1   182.3
O32 C18 C1 H11A   121.7
O32 C18 C1 H12   242.9
O32 C18 C1 H13   2.4
C1 C18 C27 N5   144.4
C1 C18 C27 H27   30.0
C27 C18 C1 O32   177.8
H11A C1 C18 H12   238.8
H11A C1 C18 H13   119.3
H12 C1 C18 H13   240.5
C10 N5 C27 H27 35.4 29.9
C27 N5 C10 HN5 180.0 180.1
O33 C10 N5 C9 179.6 180.3
N5 C10 C9 C12 124.5 182.2
N5 C10 C9 H91 359.3 60.0
N5 C10 C9 H92 249.8 304.4
HN5 N5 C27 H27 215.4 210.0
C27 N5 HN5 C10 180.0 179.9
HN5 N5 C10 O33 153.5 180.0
HN5 N5 C10 C9 333.8 359.7
O33 C10 N5 HN5 153.5 180.0
N5 C10 O33 C9 180.4 179.7
O33 C10 C9 C12 304.9 1.9
O33 C10 C9 H91 179.6 239.8
O33 C10 C9 H92 70.2 124.1
C9 C10 N5 HN5 333.8 359.7
N5 C10 C9 O33 179.6 180.3
C12 C9 C10 H91 125.3 122.2
C12 C9 C10 H92 234.7 237.8
C10 C9 C12 C21 103.5 269.9
C10 C9 C12 S37 282.1 90.0
H91 C9 C10 H92 109.5 115.6
C10 C9 C12 H91 234.7 238.3
C10 C9 C12 H92 125.3 121.6
H91 C9 C12 H92 250.5 243.2
C21 C12 C9 S37 181.4 179.9
C9 C12 C21 C23 173.0 180.0
C9 C12 C21 H21 353.0 0.2
C9 C12 S37 C14 186.9 180.0
C10 C9 H91 C12 124.0 124.4
C10 C9 H91 H92 242.0 243.1
C12 C9 H91 H92 118.0 118.7
H91 C9 C12 C21 228.8 31.6
H91 C9 C12 S37 47.4 211.7
C10 C9 H92 C12 236.0 235.7
C10 C9 H92 H91 118.0 117.0
C12 C9 H92 H91 242.0 241.4
H92 C9 C12 C21 338.2 148.4
H92 C9 C12 S37 156.8 328.5
C21 C12 C9 H91 228.8 31.6
C21 C12 C9 H92 338.2 148.4
C9 C12 C21 S37 178.8 180.1
C21 C12 S37 C14 5.7 0.0
C23 C21 C12 H21 180.0 179.8
C12 C21 C23 C14 3.2 0.0
C12 C21 C23 H23 183.2 180.2
S37 C12 C9 H91 47.4 211.7
S37 C12 C9 H92 156.8 328.5
C9 C12 S37 C21 181.2 179.9
S37 C12 C21 C23 354.1 359.9
S37 C12 C21 H21 174.1 180.1
C23 C14 S37 C12 356.1 360.0
C12 S37 C14 C17 175.8 179.9
C23 C21 C12 S37 354.1 359.9
C12 C21 C23 H21 180.0 180.2
C14 C23 C21 H23 180.0 179.9
C21 C23 C14 S37 1.2 360.0
C21 C23 C14 C17 181.6 180.1
H21 C21 C12 S37 174.1 180.1
C12 C21 H21 C23 180.0 179.8
H21 C21 C23 C14 183.2 179.9
H21 C21 C23 H23 3.1 360.0
C12 S37 C14 C23 356.1 360.0
C14 C23 C21 H21 183.2 179.9
C21 C23 C14 H23 180.0 180.1
S37 C14 C23 C17 179.7 179.9
C23 C14 C17 N3 139.7 90.0
C23 C14 C17 H171 14.4 210.5
C23 C14 C17 H172 264.9 329.3
H23 C23 C21 H21 3.1 360.0
C21 C23 H23 C14 180.0 179.9
H23 C23 C14 S37 181.3 179.9
H23 C23 C14 C17 1.6 360.0
S37 C14 C23 H23 181.3 179.9
C23 C14 S37 C17 180.3 180.1
S37 C14 C17 N3 320.1 270.1
S37 C14 C17 H171 194.8 30.6
S37 C14 C17 H172 85.3 149.5
C17 C14 C23 H23 1.6 360.0
C23 C14 C17 S37 179.6 179.9
N3 C17 C14 H171 125.3 239.5
N3 C17 C14 H172 234.7 120.6
C14 C17 N3 C19 216.8 273.2
C14 C17 N3 HN3 36.8 97.2
H171 C17 C14 H172 109.5 241.1
C14 C17 N3 H171 234.7 123.2
C14 C17 N3 H172 125.3 236.4
H171 C17 N3 H172 250.5 113.2
C19 N3 C17 HN3 180.0 175.9
C17 N3 C19 O34 7.7 0.1
C17 N3 C19 C20 186.7 181.1
C14 C17 H171 N3 126.3 236.1
C14 C17 H171 H172 243.2 122.4
N3 C17 H171 H172 116.8 246.3
H171 C17 N3 C19 342.0 150.0
H171 C17 N3 HN3 162.0 334.0
C14 C17 H172 N3 233.7 124.1
C14 C17 H172 H171 116.8 237.9
N3 C17 H172 H171 243.1 113.8
H172 C17 N3 C19 91.5 36.8
H172 C17 N3 HN3 271.5 220.8
C19 N3 C17 H171 342.0 150.0
C19 N3 C17 H172 91.5 36.8
C17 N3 C19 HN3 180.0 184.2
O34 C19 N3 C20 181.0 178.9
N3 C19 C20 C22 150.0 153.0
N3 C19 C20 C26 328.1 333.0
HN3 N3 C17 H171 162.0 334.0
HN3 N3 C17 H172 271.5 220.8
C17 N3 HN3 C19 180.0 176.0
HN3 N3 C19 O34 187.7 175.9
HN3 N3 C19 C20 6.7 356.9
O34 C19 N3 HN3 187.7 175.9
N3 C19 O34 C20 179.0 181.1
O34 C19 C20 C22 329.0 334.0
O34 C19 C20 C26 147.2 154.0
C20 C19 N3 HN3 6.7 356.9
N3 C19 C20 O34 181.0 179.0
C22 C20 C19 C26 181.8 179.9
C19 C20 C22 C11 179.3 180.1
C19 C20 C22 H22 359.3 0.1
C19 C20 C26 C25 181.1 179.9
C19 C20 C26 H26 1.1 360.0
C19 C20 C22 C26 178.2 180.1
C22 C20 C26 C25 359.3 360.0
C22 C20 C26 H26 179.3 180.0
C11 C22 C20 H22 180.0 179.9
C20 C22 C11 C24 359.1 0.0
C20 C22 C11 H11 179.1 180.0
C19 C20 C26 C22 181.8 179.9
C26 C20 C22 C11 1.1 360.0
C26 C20 C22 H22 181.1 180.0
C25 C26 C20 H26 180.0 179.9
C20 C26 C25 C24 0.2 0.0
C20 C26 C25 H25 180.2 180.1
C11 C22 C20 C26 1.1 360.0
C20 C22 C11 H22 180.0 180.1
C24 C11 C22 H11 180.0 180.0
C22 C11 C24 C25 0.3 0.0
C22 C11 C24 N2 180.5 180.0
H22 C22 C20 C26 181.1 180.0
C20 C22 H22 C11 180.0 179.9
H22 C22 C11 C24 179.2 180.0
H22 C22 C11 H11 359.1 360.0
C24 C11 C22 H22 179.2 180.0
C22 C11 C24 H11 180.0 180.0
C26 C25 C24 C11 0.1 360.0
C11 C24 C25 H25 180.1 180.0
C25 C24 C11 N2 179.7 180.0
C11 C24 N2 C13 178.8 180.0
C11 C24 N2 HN2 53.6 359.9
H11 C11 C22 H22 359.1 360.0
C22 C11 H11 C24 180.0 180.0
H11 C11 C24 C25 180.3 180.0
H11 C11 C24 N2 0.6 0.0
C20 C26 C25 H26 180.0 180.0
C11 C24 C25 C26 0.1 360.0
C24 C25 C26 H25 180.0 180.0
C26 C25 C24 N2 179.8 179.9
C20 C26 H26 C25 180.0 179.9
H26 C26 C25 C24 180.2 180.0
H26 C26 C25 H25 0.2 0.0
C25 C24 C11 H11 180.3 180.0
C11 C24 C25 N2 180.3 180.0
C24 C25 C26 H26 180.2 180.0
C26 C25 C24 H25 180.0 180.0
C25 C24 N2 C13 359.1 0.0
C25 C24 N2 HN2 233.9 180.0
H25 C25 C26 H26 0.2 0.0
C26 C25 H25 C24 180.0 180.0
H25 C25 C24 N2 359.8 359.9
N2 C24 C11 H11 0.6 0.0
C11 C24 N2 C25 179.7 180.0
N2 C24 C25 H25 359.8 359.9
C13 N2 C24 HN2 125.2 180.1
C24 N2 C13 C29 165.8 360.0
C24 N2 C13 N1 343.9 180.0
C24 N2 C13 HN2 234.8 179.9
C29 C13 N2 N1 182.0 180.0
N2 C13 C29 N4 179.0 180.0
N2 C13 C29 H29 359.0 359.9
N2 C13 N1 C8 181.0 180.0
C24 N2 HN2 C13 137.4 180.0
HN2 N2 C13 C29 291.1 180.0
HN2 N2 C13 N1 109.1 0.0
C29 C13 N2 HN2 291.1 180.0
N2 C13 C29 N1 178.1 180.0
C29 C13 N1 C8 359.0 360.0
N4 C29 C13 H29 180.0 180.1
C13 C29 N4 C31 359.4 0.0
N1 C13 N2 HN2 109.1 0.0
N2 C13 N1 C29 182.0 180.0
N1 C13 C29 N4 0.9 0.0
N1 C13 C29 H29 180.9 180.0
C31 C8 N1 C13 0.7 360.0
C13 N1 C8 C16 180.6 180.0
N4 C29 C13 N1 0.9 0.0
C13 C29 N4 H29 180.0 179.9
C29 N4 C31 C30 180.2 180.0
C29 N4 C31 C8 0.4 359.9
H29 C29 C13 N1 180.9 180.0
C13 C29 H29 N4 180.0 180.1
H29 C29 N4 C31 179.4 180.1
C31 N4 C29 H29 179.4 180.1
C30 C31 N4 C8 179.8 180.1
N4 C31 C30 C15 180.2 180.0
N4 C31 C30 H30 0.2 360.0
N4 C31 C8 N1 359.6 0.1
N4 C31 C8 C16 179.7 180.0
N4 C31 C30 C8 180.2 179.9
C30 C31 C8 N1 179.8 180.0
C30 C31 C8 C16 359.9 359.9
C15 C30 C31 H30 180.0 180.0
C31 C30 C15 C28 0.2 359.9
C31 C30 C15 H15 180.2 180.1
C13 N1 C8 C31 0.7 360.0
N4 C31 C8 C30 179.8 180.1
C8 C31 C30 C15 360.0 0.1
C8 C31 C30 H30 179.9 180.1
N1 C8 C31 C16 179.9 180.0
C31 C8 C16 C28 0.0 0.0
C31 C8 C16 H16 180.0 180.1
C15 C30 C31 C8 360.0 0.1
C31 C30 C15 H30 180.0 180.0
C16 C28 C15 C30 359.8 0.0
C30 C15 C28 H28 179.7 180.1
C28 C15 C30 H15 180.0 179.9
H30 C30 C31 C8 179.9 180.1
C31 C30 H30 C15 180.0 180.0
H30 C30 C15 C28 180.2 179.9
H30 C30 C15 H15 0.2 0.1
C31 C8 N1 C16 180.1 180.0
N1 C8 C16 C28 180.1 180.0
N1 C8 C16 H16 0.1 0.0
C31 C8 C16 N1 179.9 180.0
C28 C16 C8 H16 180.0 180.0
C8 C16 C28 C15 0.2 360.0
C8 C16 C28 H28 180.2 179.9
C30 C15 C28 C16 359.8 0.0
C8 C16 C28 H16 180.0 180.0
C15 C28 C16 H28 180.0 180.1
C16 C28 C15 H15 179.7 179.9
C8 C16 H16 C28 180.0 180.0
H16 C16 C28 C15 180.2 180.0
H16 C16 C28 H28 0.2 359.9
C28 C15 C30 H30 180.2 179.9
C30 C15 C28 H15 180.0 180.1
C15 C28 C16 H16 180.2 180.0
C16 C28 C15 H28 180.0 179.9
H28 C28 C16 H16 0.2 359.9
C16 C28 H28 C15 180.0 180.1
H28 C28 C15 H15 359.7 359.9
H15 C15 C30 H30 0.2 0.1
C30 C15 H15 C28 180.0 179.9
H15 C15 C28 H28 359.7 359.9
C18 C1 H11A H12   120.8
C18 C1 H11A H13   240.1
H12 C1 H11A H13   119.3
C18 C1 H12 H11A   239.2
C18 C1 H12 H13   120.0
H11A C1 H12 H13   240.8
C18 C1 H13 H11A   119.9
C18 C1 H13 H12   240.0
H11A C1 H13 H12   120.1