Atom Nomenclature for Q21

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for Q21

Atom Name (V3) Atom Name (V2)
O2 O2
C13 C13
C14 C14
C15 C15
O3 O3
C16 C16
C17 C17
C18 C18
C19 C19
C21 C21
C46 C46
C45 C45
C44 C44
C43 C43
C20 C20
N3 N3
C10 C10
C11 C11
C12 C12
C7 C7
C8 C8
C9 C9
O1 O1
C1 C1
N1 N1
C2 C2
C3 C3
C4 C4
N2 N2
C5 C5
C6 C6
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19