Atom Nomenclature for PZL

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for PZL

Atom Name (V3) Atom Name (V2)
N19 N19
C16 C16
C13 C13
C12 C12
C11 C11
CL15 CL15
C10 C10
C14 C14
C9 C9
O8 O8
C3 C3
C4 C4
BR17 BR17
C2 C2
F5 F5
C6 C6
C7 C7
C1 C1
C18 C18
C26 C26
N27 N27
N28 N28
C24 C24
N20 N20
C25 C25
C23 C23
C22 C22
N21 N21
H12 H12
H10 H10
H14 H14
H7 H7
H1 H1
H18 H18
H18A H18A
HN28 HN28
H23 H23
H22 H22