PDB Chemical Component PYZ

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for PYZ

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N1 N2 1.368 1.399
N1 C5 1.338 1.350
N1 HN1 1.019 0.970
N2 C3 1.339 1.309
C3 C4 1.354 1.399
C3 H3 1.104 1.080
C4 I4 2.059 2.094
C4 C5 1.373 1.352
C5 H5 1.103 1.080

Bond Angles for PYZ

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
N2 N1 C5 111.7 107.9
N2 N1 HN1 125.1 126.0
N1 N2 C3 110.4 108.2
C5 N1 HN1 123.2 126.0
N1 C5 C4 99.7 107.8
N1 C5 H5 129.3 126.1
N2 C3 C4 100.8 108.2
N2 C3 H3 129.2 125.9
C4 C3 H3 130.0 125.9
C3 C4 I4 120.1 126.0
C3 C4 C5 117.4 107.9
I4 C4 C5 122.5 126.1
C4 C5 H5 131.0 126.1

Torsion Angles for PYZ

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C5 N1 N2 HN1 180.0 180.0
N2 N1 C5 C4 359.8 0.1
N2 N1 C5 H5 179.8 180.0
N1 N2 C3 C4 0.4 0.3
N1 N2 C3 H3 180.4 180.0
N2 N1 C5 HN1 180.0 180.0
C5 N1 N2 C3 359.9 359.8
C3 C4 C5 N1 0.4 0.1
I4 C4 C5 N1 183.0 180.0
C4 C5 N1 H5 180.0 180.1
N2 N1 HN1 C5 180.0 180.0
HN1 N1 N2 C3 179.8 179.8
HN1 N1 C5 C4 179.9 180.1
HN1 N1 C5 H5 359.9 359.9
C3 N2 N1 C5 359.9 359.8
C3 N2 N1 HN1 179.8 179.8
C4 C3 N2 H3 180.0 180.3
N2 C3 C4 I4 177.0 179.8
N2 C3 C4 C5 359.5 359.8
N1 C5 C4 C3 0.4 0.1
N2 C3 C4 H3 180.0 179.7
I4 C4 C3 C5 177.5 180.1
C3 C4 C5 H5 180.5 180.2
N2 C3 H3 C4 180.0 180.3
H3 C3 C4 I4 357.0 0.1
H3 C3 C4 C5 179.5 180.0
N1 C5 C4 I4 183.0 180.0
I4 C4 C3 H3 357.0 0.1
C3 C4 I4 C5 182.6 179.9
I4 C4 C5 H5 3.0 0.1
C4 C5 N1 HN1 179.9 180.1
N1 C5 C4 H5 180.0 179.9
C5 C4 C3 H3 179.5 180.0
C3 C4 C5 I4 177.4 180.1
H5 C5 N1 HN1 359.9 359.9
N1 C5 H5 C4 180.0 180.2