PDB Chemical Component PYR
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for PYR
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C |
O |
1.250 |
1.212 |
| C |
OXT |
1.248 |
1.346 |
| C |
CA |
1.434 |
1.491 |
| OXT |
HXT |
0.950 |
0.967 |
| CA |
O3 |
1.247 |
1.208 |
| CA |
CB |
1.449 |
1.508 |
| CB |
HB1 |
1.101 |
1.090 |
| CB |
HB2 |
1.100 |
1.090 |
| CB |
HB3 |
1.100 |
1.089 |
Bond Angles for PYR
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O |
C |
OXT |
121.1 |
120.0 |
| O |
C |
CA |
120.0 |
120.0 |
| OXT |
C |
CA |
118.9 |
120.0 |
| C |
OXT |
HXT |
109.5 |
117.0 |
| C |
CA |
O3 |
121.0 |
120.0 |
| C |
CA |
CB |
117.2 |
120.0 |
| O3 |
CA |
CB |
121.7 |
120.0 |
| CA |
CB |
HB1 |
109.5 |
109.4 |
| CA |
CB |
HB2 |
109.5 |
109.4 |
| CA |
CB |
HB3 |
109.5 |
109.5 |
| HB1 |
CB |
HB2 |
109.5 |
109.5 |
| HB1 |
CB |
HB3 |
109.4 |
109.5 |
| HB2 |
CB |
HB3 |
109.5 |
109.4 |
Torsion Angles for PYR
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| OXT |
C |
O |
CA |
179.8 |
180.3 |
| O |
C |
OXT |
HXT |
0.0 |
360.0 |
| O |
C |
CA |
O3 |
288.4 |
180.0 |
| O |
C |
CA |
CB |
110.8 |
0.1 |
| O |
C |
OXT |
CA |
180.2 |
179.7 |
| OXT |
C |
CA |
O3 |
108.6 |
359.7 |
| OXT |
C |
CA |
CB |
291.0 |
179.7 |
| O |
C |
CA |
OXT |
179.8 |
180.3 |
| CA |
C |
OXT |
HXT |
179.8 |
180.3 |
| O3 |
CA |
C |
CB |
177.6 |
179.9 |
| C |
CA |
CB |
HB1 |
177.6 |
360.0 |
| C |
CA |
CB |
HB2 |
297.6 |
120.0 |
| C |
CA |
CB |
HB3 |
57.6 |
239.9 |
| HXT |
OXT |
C |
CA |
179.8 |
180.3 |
| C |
CA |
O3 |
CB |
182.5 |
180.1 |
| O3 |
CA |
CB |
HB1 |
360.0 |
180.0 |
| O3 |
CA |
CB |
HB2 |
120.0 |
300.1 |
| O3 |
CA |
CB |
HB3 |
240.0 |
60.0 |
| C |
CA |
CB |
O3 |
177.6 |
179.9 |
| HB1 |
CB |
CA |
HB2 |
240.0 |
240.0 |
| HB1 |
CB |
CA |
HB3 |
120.0 |
120.0 |
| HB2 |
CB |
CA |
HB3 |
240.0 |
240.0 |
| CA |
CB |
HB1 |
HB2 |
120.0 |
120.0 |
| CA |
CB |
HB1 |
HB3 |
240.0 |
240.0 |
| HB2 |
CB |
HB1 |
HB3 |
120.0 |
120.0 |
| CA |
CB |
HB2 |
HB1 |
240.0 |
240.0 |
| CA |
CB |
HB2 |
HB3 |
120.0 |
120.0 |
| HB1 |
CB |
HB2 |
HB3 |
240.0 |
239.9 |
| CA |
CB |
HB3 |
HB1 |
120.0 |
120.0 |
| CA |
CB |
HB3 |
HB2 |
240.0 |
240.0 |
| HB1 |
CB |
HB3 |
HB2 |
120.0 |
120.1 |