PDB Chemical Component PYM

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for PYM

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 N1 1.283 1.347
C1 O1 1.288 1.214
C1 C2 1.401 1.490
N1 HN12 1.020 0.970
N1 HN11 1.019 0.970
C2 O2 1.229 1.207
C2 C3 1.340 1.506
C3 H33 1.114 1.090
C3 H32 1.115 1.090
C3 H31 1.116 1.090

Bond Angles for PYM

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
N1 C1 O1 120.3 120.0
N1 C1 C2 118.6 120.1
C1 N1 HN12 118.6 120.1
C1 N1 HN11 120.3 120.0
O1 C1 C2 121.1 120.0
C1 C2 O2 126.1 119.9
C1 C2 C3 131.7 120.0
HN12 N1 HN11 121.1 119.9
O2 C2 C3 102.2 120.0
C2 C3 H33 131.7 109.5
C2 C3 H32 104.5 109.5
C2 C3 H31 104.5 109.5
H33 C3 H32 104.5 109.4
H33 C3 H31 104.5 109.4
H32 C3 H31 104.4 109.5

Torsion Angles for PYM

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O1 C1 N1 C2 180.3 180.0
N1 C1 C2 O2 0.3 360.0
N1 C1 C2 C3 179.9 180.0
HN12 N1 C1 HN11 180.2 180.0
N1 C1 O1 C2 179.7 180.0
O1 C1 N1 HN12 0.3 360.0
O1 C1 N1 HN11 180.0 180.0
O1 C1 C2 O2 180.0 180.0
O1 C1 C2 C3 359.7 -0.0
N1 C1 C2 O1 180.3 180.0
C2 C1 N1 HN12 180.0 180.0
C2 C1 N1 HN11 359.8 360.0
O2 C2 C1 C3 180.4 180.0
C1 C2 C3 H33 180.0 180.0
C1 C2 C3 H32 305.3 299.9
C1 C2 C3 H31 54.7 60.1
HN12 N1 C1 O1 0.3 360.0
HN12 N1 C1 C2 180.0 180.0
C1 N1 HN12 HN11 179.8 180.0
HN11 N1 C1 O1 180.0 180.0
HN11 N1 C1 C2 359.8 -0.0
C1 N1 HN11 HN12 180.2 180.0
C1 C2 O2 C3 179.7 180.0
O2 C2 C3 H33 359.6 360.0
O2 C2 C3 H32 125.0 119.9
O2 C2 C3 H31 234.4 240.1
C1 C2 C3 O2 180.3 180.0
H33 C3 C2 H32 234.7 240.1
H33 C3 C2 H31 125.2 119.9
H32 C3 C2 H31 250.5 239.9
C2 C3 H33 H32 125.3 120.0
C2 C3 H33 H31 234.7 240.0
H32 C3 H33 H31 109.4 120.0
C2 C3 H32 H33 219.0 240.0
C2 C3 H32 H31 109.5 120.1
H33 C3 H32 H31 250.5 240.0
C2 C3 H31 H33 141.0 120.0
C2 C3 H31 H32 250.5 239.9
H33 C3 H31 H32 109.5 120.0