PDB Chemical Component PYJ
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for PYJ
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| CB |
CX |
1.539 |
1.530 |
| CB |
CG |
1.503 |
1.507 |
| CB |
HCB1 |
1.100 |
1.090 |
| CB |
HCB2 |
1.100 |
1.090 |
| CX |
HCX1 |
1.100 |
1.090 |
| CX |
HCX2 |
1.100 |
1.089 |
| CX |
HCX3 |
1.100 |
1.091 |
| CG |
CD1 |
1.394 |
1.383 |
| CG |
CD2 |
1.395 |
1.382 |
| CD1 |
CE1 |
1.397 |
1.382 |
| CD1 |
HCD1 |
1.080 |
1.080 |
| CD2 |
CE2 |
1.386 |
1.383 |
| CD2 |
HCD2 |
1.080 |
1.079 |
| CE1 |
CZ |
1.398 |
1.383 |
| CE1 |
HCE1 |
1.081 |
1.080 |
| CE2 |
CZ |
1.391 |
1.383 |
| CE2 |
HCE2 |
1.081 |
1.080 |
| CZ |
HCZ1 |
1.080 |
1.079 |
Bond Angles for PYJ
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CX |
CB |
CG |
117.0 |
109.5 |
| CX |
CB |
HCB1 |
107.6 |
109.5 |
| CX |
CB |
HCB2 |
107.6 |
109.5 |
| CB |
CX |
HCX1 |
109.5 |
109.5 |
| CB |
CX |
HCX2 |
109.5 |
109.5 |
| CB |
CX |
HCX3 |
109.5 |
109.5 |
| CG |
CB |
HCB1 |
107.6 |
109.5 |
| CG |
CB |
HCB2 |
107.6 |
109.4 |
| CB |
CG |
CD1 |
113.0 |
120.0 |
| CB |
CG |
CD2 |
126.3 |
120.0 |
| HCB1 |
CB |
HCB2 |
109.5 |
109.5 |
| HCX1 |
CX |
HCX2 |
109.5 |
109.5 |
| HCX1 |
CX |
HCX3 |
109.4 |
109.4 |
| HCX2 |
CX |
HCX3 |
109.5 |
109.5 |
| CD1 |
CG |
CD2 |
120.7 |
120.0 |
| CG |
CD1 |
CE1 |
123.3 |
120.0 |
| CG |
CD1 |
HCD1 |
118.4 |
120.0 |
| CG |
CD2 |
CE2 |
117.8 |
120.0 |
| CG |
CD2 |
HCD2 |
121.1 |
120.0 |
| CE1 |
CD1 |
HCD1 |
118.3 |
120.0 |
| CD1 |
CE1 |
CZ |
113.9 |
120.0 |
| CD1 |
CE1 |
HCE1 |
123.0 |
120.0 |
| CE2 |
CD2 |
HCD2 |
121.1 |
120.0 |
| CD2 |
CE2 |
CZ |
119.9 |
120.0 |
| CD2 |
CE2 |
HCE2 |
120.0 |
120.0 |
| CZ |
CE1 |
HCE1 |
123.0 |
120.0 |
| CE1 |
CZ |
CE2 |
124.4 |
120.0 |
| CE1 |
CZ |
HCZ1 |
117.8 |
120.0 |
| CZ |
CE2 |
HCE2 |
120.1 |
120.0 |
| CE2 |
CZ |
HCZ1 |
117.8 |
120.0 |
Torsion Angles for PYJ
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CG |
CB |
CX |
HCB1 |
238.9 |
240.0 |
| CG |
CB |
CX |
HCB2 |
121.1 |
120.0 |
| CX |
CB |
CG |
CD1 |
44.8 |
90.0 |
| CX |
CB |
CG |
CD2 |
223.8 |
269.8 |
| HCB1 |
CB |
CX |
HCB2 |
242.2 |
240.0 |
| HCX1 |
CX |
CB |
HCX2 |
240.0 |
240.0 |
| HCX1 |
CX |
CB |
HCX3 |
120.0 |
119.9 |
| HCX2 |
CX |
CB |
HCX3 |
240.0 |
239.9 |
| CX |
CB |
CG |
HCB1 |
121.1 |
120.0 |
| CX |
CB |
CG |
HCB2 |
238.9 |
240.0 |
| CG |
CB |
CX |
HCX1 |
180.0 |
180.0 |
| CG |
CB |
CX |
HCX2 |
300.0 |
300.0 |
| CG |
CB |
CX |
HCX3 |
60.0 |
60.0 |
| HCB1 |
CB |
CG |
HCB2 |
117.8 |
120.0 |
| CD1 |
CG |
CB |
CD2 |
181.0 |
180.2 |
| CB |
CG |
CD1 |
CE1 |
179.0 |
180.1 |
| CB |
CG |
CD1 |
HCD1 |
359.0 |
360.0 |
| CB |
CG |
CD2 |
CE2 |
181.1 |
180.0 |
| CB |
CG |
CD2 |
HCD2 |
1.1 |
359.9 |
| CX |
CB |
HCB1 |
CG |
233.2 |
240.0 |
| CX |
CB |
HCB1 |
HCB2 |
116.6 |
120.0 |
| HCB1 |
CB |
CX |
HCX1 |
301.0 |
300.0 |
| HCB1 |
CB |
CX |
HCX2 |
61.1 |
60.0 |
| HCB1 |
CB |
CX |
HCX3 |
181.1 |
180.1 |
| CG |
CB |
HCB1 |
HCB2 |
243.4 |
240.0 |
| HCB1 |
CB |
CG |
CD1 |
283.7 |
330.0 |
| HCB1 |
CB |
CG |
CD2 |
102.7 |
149.8 |
| CX |
CB |
HCB2 |
CG |
126.8 |
120.0 |
| CX |
CB |
HCB2 |
HCB1 |
243.4 |
240.0 |
| HCB2 |
CB |
CX |
HCX1 |
58.9 |
60.0 |
| HCB2 |
CB |
CX |
HCX2 |
178.9 |
180.0 |
| HCB2 |
CB |
CX |
HCX3 |
298.9 |
300.1 |
| CG |
CB |
HCB2 |
HCB1 |
116.6 |
120.0 |
| HCB2 |
CB |
CG |
CD1 |
165.9 |
210.0 |
| HCB2 |
CB |
CG |
CD2 |
344.9 |
29.8 |
| HCX1 |
CX |
CB |
CG |
180.0 |
180.0 |
| HCX1 |
CX |
CB |
HCB1 |
301.0 |
300.0 |
| HCX1 |
CX |
CB |
HCB2 |
58.9 |
60.0 |
| CB |
CX |
HCX1 |
HCX2 |
120.1 |
120.0 |
| CB |
CX |
HCX1 |
HCX3 |
240.0 |
240.0 |
| HCX2 |
CX |
HCX1 |
HCX3 |
120.0 |
120.0 |
| HCX2 |
CX |
CB |
CG |
300.0 |
300.0 |
| HCX2 |
CX |
CB |
HCB1 |
61.1 |
60.0 |
| HCX2 |
CX |
CB |
HCB2 |
178.9 |
180.0 |
| CB |
CX |
HCX2 |
HCX1 |
239.9 |
240.0 |
| CB |
CX |
HCX2 |
HCX3 |
120.0 |
120.0 |
| HCX1 |
CX |
HCX2 |
HCX3 |
240.1 |
240.0 |
| HCX3 |
CX |
CB |
CG |
60.0 |
60.0 |
| HCX3 |
CX |
CB |
HCB1 |
181.1 |
180.1 |
| HCX3 |
CX |
CB |
HCB2 |
298.9 |
300.1 |
| CB |
CX |
HCX3 |
HCX1 |
120.0 |
120.0 |
| CB |
CX |
HCX3 |
HCX2 |
240.0 |
240.0 |
| HCX1 |
CX |
HCX3 |
HCX2 |
120.0 |
120.0 |
| CD1 |
CG |
CB |
HCB1 |
283.7 |
330.0 |
| CD1 |
CG |
CB |
HCB2 |
165.9 |
210.0 |
| CB |
CG |
CD1 |
CD2 |
179.1 |
179.8 |
| CD1 |
CG |
CD2 |
CE2 |
0.1 |
359.8 |
| CD1 |
CG |
CD2 |
HCD2 |
180.0 |
179.7 |
| CE1 |
CD1 |
CG |
HCD1 |
180.0 |
180.1 |
| CG |
CD1 |
CE1 |
CZ |
360.0 |
359.9 |
| CG |
CD1 |
CE1 |
HCE1 |
180.0 |
180.0 |
| CD2 |
CG |
CB |
HCB1 |
102.7 |
149.8 |
| CD2 |
CG |
CB |
HCB2 |
344.9 |
29.8 |
| CB |
CG |
CD2 |
CD1 |
181.0 |
180.2 |
| CD2 |
CG |
CD1 |
CE1 |
359.9 |
0.2 |
| CD2 |
CG |
CD1 |
HCD1 |
179.9 |
180.2 |
| CE2 |
CD2 |
CG |
HCD2 |
180.0 |
180.1 |
| CG |
CD2 |
CE2 |
CZ |
0.1 |
359.9 |
| CG |
CD2 |
CE2 |
HCE2 |
180.1 |
179.9 |
| CE1 |
CD1 |
CG |
CD2 |
359.9 |
0.2 |
| CG |
CD1 |
CE1 |
HCD1 |
180.0 |
179.9 |
| CZ |
CE1 |
CD1 |
HCE1 |
180.0 |
180.0 |
| CD1 |
CE1 |
CZ |
CE2 |
0.2 |
359.8 |
| CD1 |
CE1 |
CZ |
HCZ1 |
180.2 |
180.0 |
| HCD1 |
CD1 |
CG |
CD2 |
179.9 |
180.2 |
| CG |
CD1 |
HCD1 |
CE1 |
180.0 |
180.1 |
| HCD1 |
CD1 |
CE1 |
CZ |
180.0 |
180.0 |
| HCD1 |
CD1 |
CE1 |
HCE1 |
360.0 |
0.0 |
| CG |
CD2 |
CE2 |
HCD2 |
180.0 |
179.9 |
| CE1 |
CZ |
CE2 |
CD2 |
359.7 |
0.2 |
| CZ |
CE2 |
CD2 |
HCE2 |
180.0 |
180.0 |
| CD2 |
CE2 |
CZ |
HCZ1 |
179.7 |
180.1 |
| CG |
CD2 |
HCD2 |
CE2 |
180.0 |
180.1 |
| HCD2 |
CD2 |
CE2 |
CZ |
180.2 |
180.0 |
| HCD2 |
CD2 |
CE2 |
HCE2 |
0.2 |
0.0 |
| CZ |
CE1 |
CD1 |
HCD1 |
180.0 |
180.0 |
| CD1 |
CE1 |
CZ |
HCE1 |
180.0 |
180.0 |
| CD2 |
CE2 |
CZ |
CE1 |
359.7 |
0.2 |
| CE1 |
CZ |
CE2 |
HCE2 |
179.7 |
180.3 |
| CE2 |
CZ |
CE1 |
HCZ1 |
180.0 |
179.8 |
| HCE1 |
CE1 |
CD1 |
HCD1 |
360.0 |
0.0 |
| CD1 |
CE1 |
HCE1 |
CZ |
180.0 |
180.0 |
| HCE1 |
CE1 |
CZ |
CE2 |
180.2 |
179.8 |
| HCE1 |
CE1 |
CZ |
HCZ1 |
0.2 |
359.9 |
| CZ |
CE2 |
CD2 |
HCD2 |
180.2 |
180.0 |
| CD2 |
CE2 |
CZ |
HCE2 |
180.0 |
180.0 |
| CE2 |
CZ |
CE1 |
HCE1 |
180.2 |
179.8 |
| CE1 |
CZ |
CE2 |
HCZ1 |
180.0 |
180.2 |
| HCE2 |
CE2 |
CD2 |
HCD2 |
0.2 |
0.0 |
| CD2 |
CE2 |
HCE2 |
CZ |
180.0 |
180.0 |
| HCE2 |
CE2 |
CZ |
HCZ1 |
359.7 |
0.1 |
| HCZ1 |
CZ |
CE1 |
HCE1 |
0.2 |
359.9 |
| CE1 |
CZ |
HCZ1 |
CE2 |
180.0 |
179.8 |
| HCZ1 |
CZ |
CE2 |
HCE2 |
359.7 |
0.1 |