PDB Chemical Component PYH

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for PYH

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
CAA CAP 1.530 1.530
CAA HAA1 1.100 1.090
CAA HAA2 1.100 1.090
CAA HAA3 1.100 1.090
CAP CAJ 1.527 1.547
CAP CAR 1.528 1.546
CAP HAP 1.100 1.090
CAJ CAF 1.531 1.512
CAJ HAJ1 1.100 1.090
CAJ HAJ2 1.100 1.090
CAF NAL 1.332 1.273
CAF HAF 1.080 1.080
NAL CAR 1.471 1.468
CAR CAO 1.531 1.506
CAR HAR 1.100 1.090
CAO NZ 1.331 1.348
CAO OAD 1.230 1.213
NZ CE 1.469 1.465
NZ HZ 1.000 0.970
CE CD 1.530 1.530
CE HE1 1.100 1.090
CE HE2 1.100 1.090
CD CG 1.530 1.529
CD HD1 1.100 1.090
CD HD2 1.099 1.091
CG CB 1.531 1.530
CG HG1 1.100 1.090
CG HG2 1.100 1.090
CB CA 1.531 1.530
CB HB1 1.100 1.090
CB HB2 1.100 1.090
CA C 1.530 1.507
CA HA 1.100 1.090
CA N 1.470 1.469
C OXT 1.250 1.342
C O 1.250 1.208
OXT HXT 0.950 0.967
N H 1.000 1.010
N HN2 1.000 1.009

Bond Angles for PYH

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
CAP CAA HAA1 109.5 109.4
CAP CAA HAA2 109.5 109.5
CAP CAA HAA3 109.5 109.5
CAA CAP CAJ 112.7 111.2
CAA CAP CAR 114.3 111.2
CAA CAP HAP 109.5 110.9
HAA1 CAA HAA2 109.5 109.5
HAA1 CAA HAA3 109.5 109.5
HAA2 CAA HAA3 109.4 109.5
CAJ CAP CAR 100.8 100.8
CAJ CAP HAP 109.6 111.2
CAP CAJ CAF 101.0 103.8
CAP CAJ HAJ1 111.6 110.6
CAP CAJ HAJ2 111.5 110.6
CAR CAP HAP 109.6 111.2
CAP CAR NAL 103.3 105.0
CAP CAR CAO 111.8 110.4
CAP CAR HAR 110.0 110.3
CAF CAJ HAJ1 111.5 110.6
CAF CAJ HAJ2 111.5 110.6
CAJ CAF NAL 109.7 111.2
CAJ CAF HAF 125.2 124.4
HAJ1 CAJ HAJ2 109.5 110.5
NAL CAF HAF 125.1 124.3
CAF NAL CAR 110.1 112.6
NAL CAR CAO 110.8 110.3
NAL CAR HAR 110.8 110.3
CAO CAR HAR 110.0 110.4
CAR CAO NZ 114.0 120.0
CAR CAO OAD 121.5 120.0
OAD CAO NZ 124.5 120.0
CAO NZ CE 123.3 120.0
CAO NZ HZ 118.4 120.0
CE NZ HZ 118.4 120.0
NZ CE CD 108.8 109.5
NZ CE HE1 109.6 109.4
NZ CE HE2 109.6 109.4
CD CE HE1 109.7 109.5
CD CE HE2 109.7 109.5
CE CD CG 110.8 109.5
CE CD HD1 109.1 109.5
CE CD HD2 109.1 109.5
HE1 CE HE2 109.5 109.5
CG CD HD1 109.1 109.5
CG CD HD2 109.1 109.5
CD CG CB 112.0 109.5
CD CG HG1 108.8 109.5
CD CG HG2 108.8 109.5
HD1 CD HD2 109.5 109.4
CB CG HG1 108.8 109.4
CB CG HG2 108.8 109.4
CG CB CA 111.5 109.5
CG CB HB1 109.0 109.5
CG CB HB2 109.0 109.5
HG1 CG HG2 109.5 109.5
CA CB HB1 108.9 109.4
CA CB HB2 109.0 109.5
CB CA C 109.6 109.5
CB CA HA 108.9 109.5
CB CA N 110.2 109.4
HB1 CB HB2 109.5 109.5
C CA HA 108.9 109.5
C CA N 109.6 109.5
CA C OXT 116.7 120.0
CA C O 117.0 120.0
N CA HA 109.6 109.5
CA N H 109.5 111.0
CA N HN2 109.4 111.0
OXT C O 126.3 120.0
C OXT HXT 109.5 117.0
H N HN2 109.5 111.0

Torsion Angles for PYH

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
HAA1 CAA CAP HAA2 240.0 240.0
HAA1 CAA CAP HAA3 120.0 120.0
HAA2 CAA CAP HAA3 240.0 239.9
CAJ CAP CAA CAR 114.3 111.5
CAJ CAP CAA HAP 237.7 235.7
CAA CAP CAJ CAF 202.0 218.6
CAA CAP CAJ HAJ1 320.6 337.1
CAA CAP CAJ HAJ2 83.4 99.9
CAR CAP CAA HAP 123.4 124.2
CAA CAP CAR NAL 157.9 141.9
CAA CAP CAR CAO 277.1 260.8
CAA CAP CAR HAR 39.5 23.0
CAP CAA HAA1 HAA2 120.0 120.0
CAP CAA HAA1 HAA3 240.0 240.0
HAA1 CAA CAP CAJ 180.0 58.6
HAA1 CAA CAP CAR 65.7 307.1
HAA1 CAA CAP HAP 302.3 182.8
HAA2 CAA HAA1 HAA3 120.0 120.1
CAP CAA HAA2 HAA1 240.0 240.1
CAP CAA HAA2 HAA3 120.0 120.0
HAA2 CAA CAP CAJ 300.0 178.5
HAA2 CAA CAP CAR 185.8 67.1
HAA2 CAA CAP HAP 62.3 302.8
HAA1 CAA HAA2 HAA3 240.0 240.0
CAP CAA HAA3 HAA1 120.0 120.0
CAP CAA HAA3 HAA2 240.0 240.0
HAA3 CAA CAP CAJ 60.0 298.6
HAA3 CAA CAP CAR 305.7 187.1
HAA3 CAA CAP HAP 182.3 62.9
HAA1 CAA HAA3 HAA2 120.0 120.0
CAJ CAP CAA HAA1 180.0 58.6
CAJ CAP CAA HAA2 300.0 178.5
CAJ CAP CAA HAA3 60.0 298.6
CAA CAP CAJ CAR 237.7 242.1
CAA CAP CAJ HAP 122.3 124.1
CAR CAP CAJ HAP 244.5 242.1
CAJ CAP CAR NAL 36.8 23.9
CAJ CAP CAR CAO 156.0 142.9
CAJ CAP CAR HAR 278.4 265.1
CAF CAJ CAP HAJ1 241.4 241.4
CAF CAJ CAP HAJ2 118.6 118.6
CAP CAJ CAF NAL 23.6 15.9
CAP CAJ CAF HAF 203.6 195.9
HAJ1 CAJ CAP HAJ2 237.3 237.2
CAR CAP CAA HAA1 65.7 307.1
CAR CAP CAA HAA2 185.8 67.1
CAR CAP CAA HAA3 305.7 187.1
CAA CAP CAR CAJ 121.1 117.9
CAA CAP CAR HAP 236.6 235.9
CAJ CAP CAR HAP 115.5 117.9
CAR CAP CAJ CAF 324.2 336.5
CAR CAP CAJ HAJ1 82.9 95.1
CAR CAP CAJ HAJ2 205.6 217.9
CAF NAL CAR CAP 336.3 343.8
NAL CAR CAP CAO 240.8 241.1
NAL CAR CAP HAR 118.3 118.8
CAO CAR CAP HAR 237.5 237.8
CAP CAR CAO NZ 225.3 80.0
CAP CAR CAO OAD 44.3 260.1
HAP CAP CAA HAA1 302.3 182.8
HAP CAP CAA HAA2 62.3 302.8
HAP CAP CAA HAA3 182.3 62.9
CAA CAP HAP CAJ 235.9 235.7
CAA CAP HAP CAR 126.2 124.3
CAJ CAP HAP CAR 250.3 248.5
HAP CAP CAJ CAF 79.7 94.4
HAP CAP CAJ HAJ1 198.3 213.0
HAP CAP CAJ HAJ2 321.1 335.8
HAP CAP CAR NAL 281.3 266.0
HAP CAP CAR CAO 40.5 24.9
HAP CAP CAR HAR 162.9 147.2
CAF CAJ CAP CAR 324.2 336.5
CAF CAJ CAP HAP 79.7 94.4
CAP CAJ CAF HAJ1 118.6 118.6
CAP CAJ CAF HAJ2 241.4 241.3
HAJ1 CAJ CAF HAJ2 122.7 122.7
NAL CAF CAJ HAF 180.0 180.0
CAJ CAF NAL CAR 359.9 0.1
HAJ1 CAJ CAP CAR 82.9 95.1
HAJ1 CAJ CAP HAP 198.3 213.0
CAP CAJ HAJ1 CAF 247.9 245.6
CAP CAJ HAJ1 HAJ2 123.9 122.9
CAF CAJ HAJ1 HAJ2 236.1 237.2
HAJ1 CAJ CAF NAL 265.0 257.3
HAJ1 CAJ CAF HAF 85.0 77.3
HAJ2 CAJ CAP CAR 205.6 217.9
HAJ2 CAJ CAP HAP 321.1 335.8
CAP CAJ HAJ2 CAF 112.1 114.4
CAP CAJ HAJ2 HAJ1 236.1 237.2
CAF CAJ HAJ2 HAJ1 123.9 122.8
HAJ2 CAJ CAF NAL 142.2 134.5
HAJ2 CAJ CAF HAF 322.2 314.6
CAP CAR NAL CAF 336.3 343.8
NAL CAF CAJ HAJ1 265.0 257.3
NAL CAF CAJ HAJ2 142.2 134.5
CAJ CAF NAL HAF 180.0 180.0
CAF NAL CAR CAO 216.4 224.9
CAF NAL CAR HAR 94.1 102.7
HAF CAF CAJ HAJ1 85.0 77.3
HAF CAF CAJ HAJ2 322.2 314.6
CAJ CAF HAF NAL 180.0 180.0
HAF CAF NAL CAR 179.9 180.1
NAL CAR CAP HAP 281.3 266.0
CAP CAR NAL CAO 119.9 118.9
CAP CAR NAL HAR 242.2 241.2
CAR NAL CAF HAF 179.9 180.1
CAO CAR NAL HAR 122.4 122.2
NAL CAR CAO NZ 340.0 195.6
NAL CAR CAO OAD 159.0 15.7
CAO CAR CAP HAP 40.5 24.9
CAP CAR CAO NAL 245.3 244.3
CAP CAR CAO HAR 122.5 122.2
NAL CAR CAO HAR 237.1 237.8
OAD CAO CAR NZ 179.0 180.1
CAR CAO NZ CE 180.4 180.0
CAR CAO NZ HZ 0.5 0.1
HAR CAR CAP HAP 162.9 147.2
CAP CAR HAR NAL 113.6 115.6
CAP CAR HAR CAO 236.5 237.8
NAL CAR HAR CAO 122.9 122.2
HAR CAR CAO NZ 102.9 317.8
HAR CAR CAO OAD 281.9 137.9
NZ CAO CAR HAR 102.9 317.8
CAR CAO NZ OAD 178.9 180.1
CE NZ CAO HZ 180.0 179.9
CAO NZ CE CD 119.2 180.0
CAO NZ CE HE1 239.1 300.0
CAO NZ CE HE2 359.3 60.0
OAD CAO CAR HAR 281.9 137.9
CAR CAO OAD NZ 181.1 179.9
OAD CAO NZ CE 1.5 359.9
OAD CAO NZ HZ 181.5 180.0
CAO NZ CE HZ 180.0 180.1
CD CE NZ HE1 240.1 240.0
CD CE NZ HE2 119.9 120.0
NZ CE CD CG 296.6 180.0
NZ CE CD HD1 56.8 300.0
NZ CE CD HD2 176.3 59.9
HE1 CE NZ HE2 239.8 240.0
CAO NZ HZ CE 180.0 179.9
HZ NZ CE CD 299.2 360.0
HZ NZ CE HE1 59.1 120.0
HZ NZ CE HE2 179.3 240.0
CD CE NZ HZ 299.2 360.0
NZ CE CD HE1 119.9 120.0
NZ CE CD HE2 240.1 240.0
HE1 CE CD HE2 120.2 120.1
CG CD CE HD1 239.8 240.0
CG CD CE HD2 120.2 120.1
CE CD CG CB 171.9 180.0
CE CD CG HG1 292.3 300.0
CE CD CG HG2 51.5 60.0
HD1 CD CE HD2 240.4 240.1
HE1 CE NZ HZ 59.1 120.0
NZ CE HE1 CD 240.6 240.0
NZ CE HE1 HE2 120.3 120.0
CD CE HE1 HE2 239.7 240.0
HE1 CE CD CG 176.7 60.0
HE1 CE CD HD1 296.9 180.1
HE1 CE CD HD2 56.5 300.0
HE2 CE NZ HZ 179.3 240.0
NZ CE HE2 CD 119.4 120.0
NZ CE HE2 HE1 239.7 240.0
CD CE HE2 HE1 120.3 120.0
HE2 CE CD CG 56.5 300.0
HE2 CE CD HD1 176.7 60.0
HE2 CE CD HD2 296.2 179.9
CG CD CE HE1 176.7 60.0
CG CD CE HE2 56.5 300.0
CE CD CG HD1 120.2 120.0
CE CD CG HD2 239.8 240.0
HD1 CD CG HD2 119.6 120.0
CB CG CD HG1 239.6 240.0
CB CG CD HG2 120.4 120.0
CD CG CB CA 293.1 180.0
CD CG CB HB1 53.4 300.0
CD CG CB HB2 172.8 60.0
HG1 CG CD HG2 240.8 239.9
HD1 CD CE HE1 296.9 180.1
HD1 CD CE HE2 176.7 60.0
CE CD HD1 CG 238.7 240.0
CE CD HD1 HD2 119.4 120.0
CG CD HD1 HD2 240.6 240.0
HD1 CD CG CB 51.7 60.0
HD1 CD CG HG1 172.1 180.0
HD1 CD CG HG2 291.3 300.0
HD2 CD CE HE1 56.5 300.0
HD2 CD CE HE2 296.2 179.9
CE CD HD2 CG 121.3 120.0
CE CD HD2 HD1 240.6 240.1
CG CD HD2 HD1 119.4 120.0
HD2 CD CG CB 292.1 300.0
HD2 CD CG HG1 52.5 60.0
HD2 CD CG HG2 171.7 180.0
CB CG CD HD1 51.7 60.0
CB CG CD HD2 292.1 300.0
CD CG CB HG1 120.4 120.0
CD CG CB HG2 239.6 240.0
HG1 CG CB HG2 119.2 120.0
CA CB CG HB1 239.7 240.0
CA CB CG HB2 120.3 120.0
CG CB CA C 176.3 175.0
CG CB CA HA 57.3 55.0
CG CB CA N 297.0 295.0
HB1 CB CG HB2 240.6 240.0
HG1 CG CD HD1 172.1 180.0
HG1 CG CD HD2 52.5 60.0
CD CG HG1 CB 237.7 240.0
CD CG HG1 HG2 118.8 120.1
CB CG HG1 HG2 241.2 240.0
HG1 CG CB CA 172.7 60.0
HG1 CG CB HB1 293.0 180.0
HG1 CG CB HB2 52.4 300.0
HG2 CG CD HD1 291.3 300.0
HG2 CG CD HD2 171.7 180.0
CD CG HG2 CB 122.4 120.0
CD CG HG2 HG1 241.2 240.0
CB CG HG2 HG1 118.8 120.0
HG2 CG CB CA 53.5 300.0
HG2 CG CB HB1 173.8 60.0
HG2 CG CB HB2 293.2 180.0
CA CB CG HG1 172.7 60.0
CA CB CG HG2 53.5 300.0
CG CB CA HB1 120.3 120.0
CG CB CA HB2 239.7 239.9
HB1 CB CA HB2 119.4 119.9
C CA CB HA 119.0 120.0
C CA CB N 239.3 240.0
CB CA C OXT 272.2 280.0
CB CA C O 92.5 100.0
N CA CB HA 239.7 240.0
CB CA N H 180.0 176.0
CB CA N HN2 300.0 300.0
HB1 CB CG HG1 293.0 180.0
HB1 CB CG HG2 173.8 60.0
CG CB HB1 CA 238.2 240.0
CG CB HB1 HB2 119.1 120.1
CA CB HB1 HB2 240.9 240.1
HB1 CB CA C 56.0 55.0
HB1 CB CA HA 297.0 295.0
HB1 CB CA N 176.7 175.0
HB2 CB CG HG1 52.4 300.0
HB2 CB CG HG2 293.2 180.0
CG CB HB2 CA 121.9 120.1
CG CB HB2 HB1 240.9 240.0
CA CB HB2 HB1 119.1 119.9
HB2 CB CA C 296.6 295.0
HB2 CB CA HA 177.6 175.0
HB2 CB CA N 57.3 55.0
C CA CB HB1 56.0 55.0
C CA CB HB2 296.6 295.0
CB CA C HA 241.0 240.0
CB CA C N 121.1 120.0
N CA C HA 119.9 120.0
C CA N H 300.7 296.0
C CA N HN2 60.8 60.0
OXT C CA O 179.7 179.9
CA C OXT HXT 180.3 180.0
HA CA CB HB1 297.0 295.0
HA CA CB HB2 177.6 175.0
CB CA HA C 119.5 120.0
CB CA HA N 239.3 240.0
C CA HA N 119.9 120.0
HA CA C OXT 31.2 40.0
HA CA C O 211.4 220.0
HA CA N H 60.1 56.0
HA CA N HN2 180.2 180.0
N CA CB HB1 176.7 175.0
N CA CB HB2 57.3 55.0
CB CA N C 239.3 240.0
CB CA N HA 119.8 120.0
C CA N HA 240.6 240.0
N CA C OXT 151.1 160.0
N CA C O 331.4 340.0
H N CA HN2 240.0 236.0
OXT C CA HA 31.2 40.0
OXT C CA N 151.1 160.0
CA C OXT O 180.3 180.1
O C CA HA 211.4 220.0
O C CA N 331.4 340.0
CA C O OXT 179.7 179.9
O C OXT HXT 0.0 359.9
HXT OXT C O 0.0 359.9
H N CA HA 60.1 56.0
CA N H HN2 120.0 124.0
HN2 N CA HA 180.2 180.0
CA N HN2 H 240.0 236.0